Wall clock time and date at job start Mon Mar 30 2020 02:34:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.36933 * 120.00209 * 2 1 4 4 H 1.08005 * 120.00378 * 203.18668 * 3 2 1 5 5 C 1.38816 * 119.99807 * 23.19214 * 3 2 1 6 6 N 1.31621 * 120.00126 * 13.71056 * 5 3 2 7 7 Si 1.86799 * 119.99715 * 193.71626 * 5 3 2 8 8 H 1.48497 * 109.47257 * 359.97438 * 7 5 3 9 9 H 1.48503 * 109.47151 * 119.99778 * 7 5 3 10 10 H 1.48501 * 109.47170 * 239.99639 * 7 5 3 11 11 C 1.46503 * 120.00039 * 179.97438 * 2 1 3 12 12 C 1.53000 * 109.47253 * 89.99931 * 11 2 1 13 13 H 1.09009 * 109.46606 * 60.00221 * 12 11 2 14 14 O 1.42901 * 109.47415 * 300.00583 * 12 11 2 15 15 C 1.50700 * 109.47302 * 179.97438 * 12 11 2 16 16 C 1.34854 * 125.88576 * 85.00178 * 15 12 11 17 17 C 1.40894 * 107.41418 * 179.74903 * 16 15 12 18 18 C 1.34852 * 107.41850 * 0.22822 * 17 16 15 19 19 N 1.36340 * 125.89238 * 265.13705 * 15 12 11 20 20 H 0.96995 * 125.63755 * 0.02607 * 19 15 12 21 21 H 1.08996 * 109.47794 * 275.15892 * 1 2 3 22 22 H 1.09003 * 109.47078 * 35.15825 * 1 2 3 23 23 H 1.09001 * 109.47271 * 155.15326 * 1 2 3 24 24 H 0.96998 * 119.99673 * 180.02562 * 6 5 3 25 25 H 1.09003 * 109.46748 * 330.00588 * 11 2 1 26 26 H 1.08994 * 109.47176 * 210.00242 * 11 2 1 27 27 H 0.96703 * 113.99653 * 300.00141 * 14 12 11 28 28 H 1.07997 * 126.29355 * 0.02562 * 16 15 12 29 29 H 1.07998 * 126.28949 * 180.25342 * 17 16 15 30 30 H 1.07996 * 125.89020 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1858 0.0000 4 1 3.1643 1.2237 -0.3683 5 6 1.5397 2.3394 0.4734 6 7 0.4224 2.2571 1.1643 7 14 2.3046 4.0087 0.1299 8 1 3.5489 3.8298 -0.6606 9 1 1.3460 4.8440 -0.6373 10 1 2.6272 4.6793 1.4150 11 6 2.1974 -1.2687 0.0006 12 6 2.4524 -1.7111 -1.4417 13 1 3.0416 -0.9516 -1.9559 14 8 1.2039 -1.8822 -2.1154 15 6 3.2065 -3.0159 -1.4411 16 6 2.6597 -4.2448 -1.3452 17 6 3.7129 -5.1796 -1.3897 18 6 4.8636 -4.4861 -1.5059 19 7 4.5593 -3.1573 -1.5349 20 1 5.1992 -2.4326 -1.6130 21 1 -0.3634 0.0924 1.0234 22 1 -0.3633 0.8402 -0.5918 23 1 -0.3634 -0.9325 -0.4318 24 1 -0.0040 3.0633 1.4948 25 1 1.6083 -2.0282 0.5147 26 1 3.1498 -1.1382 0.5143 27 1 0.6266 -2.5447 -1.7115 28 1 1.6075 -4.4711 -1.2558 29 1 3.6164 -6.2541 -1.3402 30 1 5.8550 -4.9100 -1.5661 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259598108.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:30 Heat of formation + Delta-G solvation = -3.738556 kcal Electronic energy + Delta-G solvation = -13879.278843 eV Core-core repulsion = 11482.282186 eV Total energy + Delta-G solvation = -2396.996658 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.98633 -38.62127 -36.53640 -33.31326 -31.78153 -31.20123 -28.40358 -27.78008 -24.89360 -22.61071 -21.47853 -20.86708 -19.21668 -18.69080 -16.92189 -16.69344 -16.13572 -15.47428 -15.28469 -14.84991 -14.55269 -14.34687 -13.93471 -13.38415 -13.05987 -12.93400 -12.82211 -12.58879 -12.22645 -12.13910 -11.98621 -11.83664 -11.29399 -10.62140 -9.71207 -9.02903 -8.64366 -7.82451 -5.32757 1.38287 1.44878 1.46217 1.56144 2.15530 2.46755 2.52839 3.29309 3.55482 3.77250 4.12972 4.19781 4.45505 4.49451 4.64789 4.75993 4.90626 4.93605 5.06379 5.36503 5.40375 5.47940 5.60603 5.71322 6.14446 6.25716 6.31547 6.80858 6.87021 7.14021 7.85625 8.30091 9.19456 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.051079 B = 0.007785 C = 0.007152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.042296 B = 3595.804491 C = 3914.122358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.182 3.818 2 N -0.610 5.610 3 C -0.266 4.266 4 H 0.070 0.930 5 C -0.055 4.055 6 N -0.938 5.938 7 Si 0.969 3.031 8 H -0.265 1.265 9 H -0.292 1.292 10 H -0.290 1.290 11 C 0.134 3.866 12 C 0.169 3.831 13 H 0.078 0.922 14 O -0.555 6.555 15 C -0.023 4.023 16 C -0.208 4.208 17 C -0.222 4.222 18 C -0.010 4.010 19 N -0.552 5.552 20 H 0.422 0.578 21 H 0.002 0.998 22 H 0.008 0.992 23 H 0.037 0.963 24 H 0.248 0.752 25 H 0.054 0.946 26 H 0.049 0.951 27 H 0.380 0.620 28 H 0.138 0.862 29 H 0.151 0.849 30 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.402 -12.356 -4.793 15.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.333 5.333 3 C -0.396 4.396 4 H 0.088 0.912 5 C -0.250 4.250 6 N -0.585 5.585 7 Si 0.797 3.203 8 H -0.190 1.190 9 H -0.219 1.219 10 H -0.217 1.217 11 C 0.007 3.993 12 C 0.106 3.894 13 H 0.096 0.904 14 O -0.360 6.360 15 C -0.137 4.137 16 C -0.233 4.233 17 C -0.247 4.247 18 C -0.141 4.141 19 N -0.149 5.149 20 H 0.259 0.741 21 H 0.020 0.980 22 H 0.027 0.973 23 H 0.056 0.944 24 H 0.057 0.943 25 H 0.072 0.928 26 H 0.067 0.933 27 H 0.228 0.772 28 H 0.156 0.844 29 H 0.168 0.832 30 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 7.636 -11.648 -5.115 14.837 hybrid contribution 0.113 0.987 0.370 1.060 sum 7.749 -10.661 -4.745 14.008 Atomic orbital electron populations 1.20498 0.82602 0.96170 0.97013 1.43986 1.02190 1.01261 1.85825 1.19558 0.98612 0.86997 1.34446 0.91220 1.25813 0.98741 1.01976 0.98430 1.70248 1.21480 1.27606 1.39182 0.85183 0.77984 0.79960 0.77187 1.18969 1.21885 1.21707 1.21446 0.96350 0.87569 0.93939 1.20737 0.83770 0.89989 0.94938 0.90420 1.86583 1.28656 1.63997 1.56812 1.21182 0.84463 0.97239 1.10788 1.20855 0.99966 0.91668 1.10763 1.21175 0.92139 0.99856 1.11505 1.22407 1.01062 0.81982 1.08643 1.42021 1.06479 1.08654 1.57703 0.74055 0.98015 0.97347 0.94443 0.94256 0.92757 0.93296 0.77157 0.84408 0.83164 0.78613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.28 8.66 127.77 1.11 10.38 16 2 N -0.61 -31.15 2.84 -726.95 -2.07 -33.22 16 3 C -0.27 -14.84 9.65 84.04 0.81 -14.03 16 4 H 0.07 3.73 7.87 -2.91 -0.02 3.71 16 5 C -0.05 -3.12 5.09 84.86 0.43 -2.69 16 6 N -0.94 -56.81 10.76 21.65 0.23 -56.57 16 7 Si 0.97 45.66 29.58 68.60 2.03 47.69 16 8 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 9 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 10 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 11 C 0.13 5.45 5.32 86.38 0.46 5.91 16 12 C 0.17 5.98 3.76 29.85 0.11 6.09 16 13 H 0.08 3.00 8.14 -2.38 -0.02 2.98 16 14 O -0.56 -20.07 12.02 -148.98 -1.79 -21.86 16 15 C -0.02 -0.68 6.24 41.08 0.26 -0.42 16 16 C -0.21 -5.79 10.21 22.14 0.23 -5.56 16 17 C -0.22 -5.31 10.86 22.14 0.24 -5.07 16 18 C -0.01 -0.20 11.94 83.21 0.99 0.79 16 19 N -0.55 -13.47 6.07 -182.76 -1.11 -14.58 16 20 H 0.42 8.45 8.96 -92.71 -0.83 7.62 16 21 H 0.00 0.09 7.33 -2.39 -0.02 0.07 16 22 H 0.01 0.44 7.37 -2.39 -0.02 0.42 16 23 H 0.04 1.60 7.00 -2.39 -0.02 1.58 16 24 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 25 H 0.05 2.07 8.07 -2.39 -0.02 2.05 16 26 H 0.05 2.00 8.04 -2.39 -0.02 1.98 16 27 H 0.38 11.04 7.93 -74.06 -0.59 10.45 16 28 H 0.14 3.48 7.56 -2.91 -0.02 3.46 16 29 H 0.15 2.89 8.06 -2.91 -0.02 2.86 16 30 H 0.20 2.53 8.06 -2.91 -0.02 2.51 16 Total: -1.00 -68.36 257.02 1.66 -66.70 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: -0.27 Total: 16.43 kcal Atomic # 6 Polarization: -9.23 SS G_CDS: 4.64 Total: -4.59 kcal Atomic # 7 Polarization: -101.42 SS G_CDS: -2.94 Total: -104.37 kcal Atomic # 8 Polarization: -20.07 SS G_CDS: -1.79 Total: -21.86 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Total: -68.36 1.66 -66.70 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259598108.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.960 kcal (2) G-P(sol) polarization free energy of solvation -68.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds