Wall clock time and date at job start Mon Mar 30 2020 02:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30516 * 126.34502 * 2 1 4 4 N 1.28603 * 109.67028 * 179.97438 * 3 2 1 5 5 C 1.30526 * 109.67006 * 359.97438 * 4 3 2 6 6 C 1.50699 * 126.34287 * 179.97438 * 5 4 3 7 7 C 1.53001 * 109.46972 * 305.02420 * 6 5 4 8 8 N 1.46506 * 109.46916 * 180.02562 * 7 6 5 9 9 C 1.46494 * 120.00388 * 89.99798 * 8 7 6 10 10 C 1.36937 * 119.99741 * 269.99873 * 8 7 6 11 11 H 1.08004 * 120.00286 * 23.04692 * 10 8 7 12 12 C 1.38807 * 120.00019 * 203.04577 * 10 8 7 13 13 N 1.31617 * 120.00426 * 12.92862 * 12 10 8 14 14 Si 1.86800 * 120.00170 * 192.92670 * 12 10 8 15 15 H 1.48499 * 109.47395 * 59.99996 * 14 12 10 16 16 H 1.48497 * 109.47420 * 179.97438 * 14 12 10 17 17 H 1.48502 * 109.47376 * 300.00200 * 14 12 10 18 18 N 1.35485 * 107.30843 * 0.22428 * 5 4 3 19 19 H 0.97001 * 126.97816 * 179.77563 * 18 5 4 20 20 H 1.09006 * 109.47033 * 89.97493 * 1 2 3 21 21 H 1.08995 * 109.47482 * 209.97637 * 1 2 3 22 22 H 1.09007 * 109.47318 * 329.98171 * 1 2 3 23 23 H 1.09000 * 109.47175 * 185.02250 * 6 5 4 24 24 H 1.09005 * 109.46927 * 65.02135 * 6 5 4 25 25 H 1.08996 * 109.47322 * 60.00676 * 7 6 5 26 26 H 1.08992 * 109.47147 * 299.99849 * 7 6 5 27 27 H 1.08998 * 109.46956 * 95.12085 * 9 8 7 28 28 H 1.09001 * 109.47170 * 215.12449 * 9 8 7 29 29 H 1.09004 * 109.47061 * 335.11991 * 9 8 7 30 30 H 0.96991 * 120.00706 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2805 1.0513 0.0000 4 7 3.5125 0.6822 0.0005 5 6 3.5807 -0.6212 0.0015 6 6 4.8395 -1.4497 0.0018 7 6 5.7204 -1.0393 -1.1800 8 7 6.9439 -1.8451 -1.1800 9 6 6.9841 -3.1160 -1.9075 10 6 8.0501 -1.4102 -0.5000 11 1 7.9423 -0.7097 0.3150 12 6 9.3100 -1.8697 -0.8580 13 7 9.4777 -2.5132 -1.9938 14 14 10.7678 -1.5748 0.2723 15 1 10.5124 -2.2160 1.5871 16 1 11.9906 -2.1600 -0.3340 17 1 10.9592 -0.1145 0.4626 18 7 2.3100 -1.0914 -0.0036 19 1 2.0317 -2.0206 -0.0073 20 1 -0.3633 0.0004 -1.0277 21 1 -0.3634 -0.8901 0.5134 22 1 -0.3634 0.8899 0.5141 23 1 4.5803 -2.5046 -0.0874 24 1 5.3818 -1.2862 0.9331 25 1 5.9797 0.0156 -1.0908 26 1 5.1782 -1.2027 -2.1112 27 1 7.4039 -2.9533 -2.9002 28 1 7.6049 -3.8271 -1.3625 29 1 5.9733 -3.5132 -2.0010 30 1 10.3580 -2.8346 -2.2438 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259648956.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:37 Heat of formation + Delta-G solvation = 88.836265 kcal Electronic energy + Delta-G solvation = -13490.501567 eV Core-core repulsion = 11129.812006 eV Total energy + Delta-G solvation = -2360.689561 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.91547 -35.98044 -33.74236 -33.20590 -31.40483 -29.56546 -26.87022 -25.85006 -24.06994 -21.96305 -21.09336 -19.99058 -17.74495 -16.62846 -15.97919 -14.99305 -14.41947 -13.96840 -13.71677 -13.34573 -13.04222 -12.74936 -12.54587 -12.16094 -11.34615 -11.24748 -10.92403 -10.79582 -10.63444 -10.55424 -10.33243 -10.10521 -9.86015 -9.81186 -8.79528 -8.51228 -6.75485 -5.70672 -3.18182 1.95752 2.87301 3.07794 3.42656 3.47121 3.48719 4.36820 4.52464 4.84680 4.90783 5.23064 5.26057 5.45257 5.54063 5.71363 5.82586 5.91691 6.07787 6.18584 6.36543 6.67567 6.70594 6.94411 7.21801 7.34781 7.72275 7.84192 8.41381 8.95987 9.25377 9.87664 10.36076 11.34474 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.065271 B = 0.006268 C = 0.005935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 428.880040 B = 4466.149280 C = 4716.695717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.155 3.845 3 N -0.296 5.296 4 N -0.294 5.294 5 C 0.203 3.797 6 C -0.059 4.059 7 C 0.162 3.838 8 N -0.600 5.600 9 C 0.161 3.839 10 C -0.258 4.258 11 H 0.071 0.929 12 C 0.003 3.997 13 N -0.909 5.909 14 Si 0.906 3.094 15 H -0.284 1.284 16 H -0.291 1.291 17 H -0.282 1.282 18 N -0.585 5.585 19 H 0.425 0.575 20 H 0.082 0.918 21 H 0.074 0.926 22 H 0.092 0.908 23 H 0.071 0.929 24 H 0.095 0.905 25 H 0.063 0.937 26 H 0.035 0.965 27 H 0.032 0.968 28 H 0.041 0.959 29 H -0.004 1.004 30 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.785 -1.347 3.326 16.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.114 4.114 3 N -0.137 5.137 4 N -0.134 5.134 5 C -0.066 4.066 6 C -0.102 4.102 7 C 0.033 3.967 8 N -0.322 5.322 9 C 0.017 3.983 10 C -0.388 4.388 11 H 0.089 0.911 12 C -0.195 4.195 13 N -0.554 5.554 14 Si 0.735 3.265 15 H -0.211 1.211 16 H -0.217 1.217 17 H -0.208 1.208 18 N -0.199 5.199 19 H 0.264 0.736 20 H 0.101 0.899 21 H 0.093 0.907 22 H 0.111 0.889 23 H 0.090 0.910 24 H 0.113 0.887 25 H 0.081 0.919 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.060 0.940 29 H 0.014 0.986 30 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -15.112 0.194 3.224 15.453 hybrid contribution 0.264 -1.811 0.568 1.916 sum -14.849 -1.617 3.792 15.410 Atomic orbital electron populations 1.20140 0.84081 1.04182 1.03752 1.24754 0.96822 0.83592 1.06199 1.74221 0.96812 1.24378 1.18329 1.74292 1.11394 1.08441 1.19253 1.25381 0.86855 0.92885 1.01473 1.21100 0.87960 0.96078 1.05017 1.20600 0.87284 0.96205 0.92633 1.43931 1.08704 1.19797 1.59789 1.20819 0.93941 0.86619 0.96965 1.19199 0.84561 1.25121 1.09875 0.91126 1.25029 0.97458 1.00688 0.96339 1.70056 1.22168 1.42388 1.20770 0.86317 0.81962 0.78051 0.80122 1.21085 1.21669 1.20767 1.44049 1.07236 1.10781 1.57798 0.73644 0.89905 0.90732 0.88923 0.91019 0.88708 0.91873 0.94695 0.94934 0.93993 0.98580 0.93699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.47 10.51 36.01 0.38 -0.10 16 2 C 0.15 2.03 8.30 -154.99 -1.29 0.75 16 3 N -0.30 -5.23 12.21 32.80 0.40 -4.83 16 4 N -0.29 -5.70 12.19 32.79 0.40 -5.30 16 5 C 0.20 3.36 7.56 -154.99 -1.17 2.19 16 6 C -0.06 -1.01 6.17 -27.88 -0.17 -1.18 16 7 C 0.16 3.42 5.61 -4.04 -0.02 3.40 16 8 N -0.60 -15.13 2.92 -181.12 -0.53 -15.65 16 9 C 0.16 3.92 8.98 59.84 0.54 4.46 16 10 C -0.26 -7.14 9.65 -15.06 -0.15 -7.29 16 11 H 0.07 1.91 7.86 -52.48 -0.41 1.50 16 12 C 0.00 0.09 5.10 -17.43 -0.09 0.00 16 13 N -0.91 -26.66 10.71 55.49 0.59 -26.07 16 14 Si 0.91 22.01 29.57 -169.99 -5.03 16.98 16 15 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 16 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 17 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 18 N -0.58 -7.32 6.20 -7.60 -0.05 -7.36 16 19 H 0.42 3.59 8.96 -40.82 -0.37 3.22 16 20 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 21 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 22 H 0.09 0.66 8.14 -51.92 -0.42 0.24 16 23 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 24 H 0.09 1.73 8.14 -51.93 -0.42 1.31 16 25 H 0.06 1.43 8.04 -51.93 -0.42 1.02 16 26 H 0.03 0.71 8.07 -51.93 -0.42 0.29 16 27 H 0.03 0.86 7.34 -51.93 -0.38 0.48 16 28 H 0.04 1.08 7.34 -51.93 -0.38 0.70 16 29 H 0.00 -0.09 8.03 -51.93 -0.42 -0.51 16 30 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 261.67 15.07 3.94 3.94 Total: -1.00 -33.42 261.67 -6.28 -39.70 By element: Atomic # 1 Polarization: 0.41 SS G_CDS: -4.04 Total: -3.63 kcal Atomic # 6 Polarization: 4.20 SS G_CDS: -1.97 Total: 2.23 kcal Atomic # 7 Polarization: -60.04 SS G_CDS: 0.82 Total: -59.22 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.03 Total: 16.98 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -33.42 -6.28 -39.70 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259648956.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.534 kcal (2) G-P(sol) polarization free energy of solvation -33.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds