Wall clock time and date at job start Mon Mar 30 2020 02:31:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36349 * 125.63298 * 2 1 4 4 C 1.34847 * 108.21761 * 180.14942 * 3 2 1 5 5 C 1.40896 * 107.41771 * 359.63274 * 4 3 2 6 6 C 1.50697 * 126.29114 * 180.20938 * 5 4 3 7 7 H 1.09001 * 109.46805 * 160.02532 * 6 5 4 8 8 O 1.42899 * 109.47258 * 40.02649 * 6 5 4 9 9 C 1.52998 * 109.47013 * 280.02565 * 6 5 4 10 10 H 1.08994 * 109.47359 * 59.99941 * 9 6 5 11 11 N 1.46899 * 109.46999 * 300.00119 * 9 6 5 12 12 C 1.50704 * 109.46933 * 180.02562 * 9 6 5 13 13 H 1.07996 * 119.99942 * 359.97438 * 12 9 6 14 14 C 1.37880 * 119.99872 * 179.97438 * 12 9 6 15 15 N 1.31514 * 119.99742 * 359.97438 * 14 12 9 16 16 Si 1.86802 * 119.99873 * 179.97438 * 14 12 9 17 17 H 1.48493 * 109.47277 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.46788 * 120.00388 * 16 14 12 19 19 H 1.48495 * 109.47080 * 239.99971 * 16 14 12 20 20 C 1.34849 * 107.41486 * 0.22942 * 5 4 3 21 21 H 1.09001 * 109.46999 * 270.26055 * 1 2 3 22 22 H 1.09000 * 109.47314 * 30.26090 * 1 2 3 23 23 H 1.08997 * 109.46716 * 150.25756 * 1 2 3 24 24 H 1.07999 * 125.89168 * 0.03422 * 3 2 1 25 25 H 1.08002 * 126.29438 * 179.90446 * 4 3 2 26 26 H 0.96704 * 113.99876 * 299.99758 * 8 6 5 27 27 H 1.00905 * 110.99930 * 176.05148 * 11 9 6 28 28 H 1.00906 * 111.00160 * 299.99838 * 11 9 6 29 29 H 0.97008 * 119.99898 * 179.97438 * 15 14 12 30 30 H 1.08004 * 125.89369 * 179.97438 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2594 1.1082 0.0000 4 6 3.5461 0.7046 -0.0033 5 6 3.5461 -0.7043 0.0031 6 6 4.7608 -1.5962 0.0068 7 1 4.4822 -2.5882 0.3625 8 8 5.7557 -1.0426 0.8703 9 6 5.3200 -1.7022 -1.4134 10 1 5.5986 -0.7103 -1.7692 11 7 4.2972 -2.2713 -2.3011 12 6 6.5344 -2.5946 -1.4099 13 1 6.8736 -3.0411 -0.4870 14 6 7.2123 -2.8410 -2.5850 15 7 6.7988 -2.2975 -3.7090 16 14 8.7179 -3.9466 -2.5805 17 1 8.9733 -4.4296 -1.1997 18 1 8.4817 -5.1082 -3.4750 19 1 9.8954 -3.1814 -3.0634 20 6 2.2595 -1.1080 0.0050 21 1 -0.3633 0.0047 1.0277 22 1 -0.3634 0.8876 -0.5179 23 1 -0.3633 -0.8923 -0.5098 24 1 1.9172 2.1325 0.0005 25 1 4.4166 1.3438 -0.0057 26 1 6.0517 -0.1585 0.6135 27 1 4.6192 -2.2920 -3.2572 28 1 4.0219 -3.1916 -1.9923 29 1 7.2759 -2.4706 -4.5357 30 1 1.9172 -2.1324 0.0094 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259691075.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:10 Heat of formation + Delta-G solvation = -25.723933 kcal Electronic energy + Delta-G solvation = -13911.433342 eV Core-core repulsion = 11513.483327 eV Total energy + Delta-G solvation = -2397.950015 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.87059 -38.38645 -35.67986 -33.64412 -32.88236 -29.95950 -28.33776 -27.51294 -25.60515 -22.51532 -20.95083 -20.38471 -18.75810 -17.94899 -17.20838 -16.29619 -15.90451 -15.85064 -15.19047 -14.67483 -14.58435 -14.20494 -13.53124 -13.26081 -13.14961 -13.09440 -12.79855 -12.70867 -12.62584 -12.32260 -11.97277 -11.44462 -10.72100 -10.55936 -9.16468 -9.06779 -8.75548 -8.05292 -6.30301 1.36349 1.39337 1.51288 1.56358 2.24462 2.32680 2.42020 3.09584 3.89562 4.12730 4.33224 4.39539 4.55716 4.58346 4.62918 4.77248 4.78189 4.94195 5.06087 5.45067 5.54962 5.71319 5.85655 6.15812 6.24594 6.47079 6.69713 6.75561 6.96118 7.11586 7.20204 7.45060 8.87883 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.056893 B = 0.007986 C = 0.007568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.036353 B = 3505.258506 C = 3698.976555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.455 5.455 3 C -0.017 4.017 4 C -0.226 4.226 5 C -0.186 4.186 6 C 0.193 3.807 7 H 0.072 0.928 8 O -0.570 6.570 9 C 0.202 3.798 10 H -0.001 1.001 11 N -0.828 5.828 12 C -0.557 4.557 13 H 0.045 0.955 14 C 0.018 3.982 15 N -0.919 5.919 16 Si 0.957 3.043 17 H -0.275 1.275 18 H -0.278 1.278 19 H -0.281 1.281 20 C -0.009 4.009 21 H 0.083 0.917 22 H 0.098 0.902 23 H 0.089 0.911 24 H 0.189 0.811 25 H 0.126 0.874 26 H 0.374 0.626 27 H 0.340 0.660 28 H 0.313 0.687 29 H 0.264 0.736 30 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.770 4.447 5.655 13.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.131 5.131 3 C -0.147 4.147 4 C -0.251 4.251 5 C -0.193 4.193 6 C 0.133 3.867 7 H 0.090 0.910 8 O -0.374 6.374 9 C 0.091 3.909 10 H 0.017 0.983 11 N -0.356 5.356 12 C -0.596 4.596 13 H 0.063 0.937 14 C -0.181 4.181 15 N -0.560 5.560 16 Si 0.783 3.217 17 H -0.199 1.199 18 H -0.203 1.203 19 H -0.207 1.207 20 C -0.139 4.139 21 H 0.102 0.898 22 H 0.117 0.883 23 H 0.108 0.892 24 H 0.206 0.794 25 H 0.144 0.856 26 H 0.221 0.779 27 H 0.154 0.846 28 H 0.122 0.878 29 H 0.074 0.926 30 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -12.670 4.534 6.020 14.742 hybrid contribution 1.948 -0.792 -0.846 2.267 sum -10.722 3.741 5.173 12.479 Atomic orbital electron populations 1.22232 0.75095 1.05458 1.04125 1.44117 1.07375 1.05267 1.56360 1.22049 0.89764 0.92580 1.10270 1.20825 0.97165 0.94415 1.12652 1.20125 0.94746 0.94909 1.09503 1.19961 0.83656 0.93416 0.89659 0.91026 1.86399 1.59829 1.36773 1.54395 1.19309 0.88271 0.93632 0.89712 0.98282 1.59332 1.42627 1.26249 1.07424 1.22236 1.13717 1.29847 0.93834 0.93673 1.25735 0.99964 0.97105 0.95310 1.69873 1.41714 1.45175 0.99218 0.85537 0.79631 0.78737 0.77825 1.19923 1.20321 1.20663 1.21523 0.89727 0.92041 1.10634 0.89800 0.88325 0.89237 0.79375 0.85624 0.77919 0.84608 0.87821 0.92637 0.81708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.16 11.12 127.77 1.42 2.58 16 2 N -0.46 -12.63 3.15 -547.89 -1.72 -14.35 16 3 C -0.02 -0.48 11.43 83.21 0.95 0.47 16 4 C -0.23 -8.22 10.29 22.14 0.23 -7.99 16 5 C -0.19 -7.45 4.74 -19.99 -0.09 -7.55 16 6 C 0.19 8.82 3.11 29.85 0.09 8.91 16 7 H 0.07 3.32 8.14 -2.39 -0.02 3.30 16 8 O -0.57 -25.92 12.85 -148.98 -1.92 -27.84 16 9 C 0.20 10.52 2.47 44.17 0.11 10.63 16 10 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 11 N -0.83 -40.66 8.77 -171.81 -1.51 -42.17 16 12 C -0.56 -31.57 8.39 25.60 0.21 -31.35 16 13 H 0.04 2.64 7.70 -2.91 -0.02 2.62 16 14 C 0.02 1.01 5.38 84.66 0.46 1.47 16 15 N -0.92 -52.79 11.53 21.45 0.25 -52.54 16 16 Si 0.96 44.69 29.54 68.60 2.03 46.72 16 17 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 18 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 19 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 20 C -0.01 -0.31 11.35 83.21 0.94 0.63 16 21 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 22 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 23 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 24 H 0.19 3.93 8.06 -2.91 -0.02 3.91 16 25 H 0.13 4.40 7.82 -2.91 -0.02 4.38 16 26 H 0.37 15.10 8.41 -74.05 -0.62 14.47 16 27 H 0.34 18.19 7.07 -89.69 -0.63 17.55 16 28 H 0.31 14.56 8.99 -89.69 -0.81 13.75 16 29 H 0.26 14.41 8.31 -92.70 -0.77 13.64 16 30 H 0.17 5.04 8.06 -2.91 -0.02 5.02 16 Total: -1.00 -66.94 260.57 0.55 -66.40 By element: Atomic # 1 Polarization: 46.89 SS G_CDS: -0.90 Total: 45.99 kcal Atomic # 6 Polarization: -26.53 SS G_CDS: 4.32 Total: -22.20 kcal Atomic # 7 Polarization: -106.08 SS G_CDS: -2.98 Total: -109.07 kcal Atomic # 8 Polarization: -25.92 SS G_CDS: -1.92 Total: -27.84 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -66.94 0.55 -66.40 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259691075.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.675 kcal (2) G-P(sol) polarization free energy of solvation -66.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds