Wall clock time and date at job start Mon Mar 30 2020 02:31:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36342 * 125.63941 * 2 1 4 4 C 1.34846 * 108.22051 * 179.97438 * 3 2 1 5 5 C 1.40894 * 107.41755 * 0.02562 * 4 3 2 6 6 C 1.50703 * 126.29252 * 180.02562 * 5 4 3 7 7 H 1.08995 * 109.46898 * 204.97565 * 6 5 4 8 8 O 1.42903 * 109.46794 * 324.97455 * 6 5 4 9 9 C 1.52998 * 109.47208 * 84.97344 * 6 5 4 10 10 H 1.09001 * 109.47099 * 300.00286 * 9 6 5 11 11 N 1.46897 * 109.47082 * 60.00056 * 9 6 5 12 12 C 1.50694 * 109.47216 * 180.02562 * 9 6 5 13 13 H 1.07996 * 119.99915 * 0.02562 * 12 9 6 14 14 C 1.37883 * 120.00090 * 180.02562 * 12 9 6 15 15 N 1.31517 * 119.99753 * 359.97438 * 14 12 9 16 16 Si 1.86795 * 119.99834 * 179.97438 * 14 12 9 17 17 H 1.48507 * 109.47014 * 90.00372 * 16 14 12 18 18 H 1.48507 * 109.46968 * 209.99758 * 16 14 12 19 19 H 1.48499 * 109.47543 * 329.99989 * 16 14 12 20 20 C 1.34850 * 107.41649 * 359.97438 * 5 4 3 21 21 H 1.09005 * 109.47321 * 270.02060 * 1 2 3 22 22 H 1.09004 * 109.47236 * 30.01738 * 1 2 3 23 23 H 1.09002 * 109.47737 * 150.02283 * 1 2 3 24 24 H 1.08003 * 125.88649 * 0.02562 * 3 2 1 25 25 H 1.07995 * 126.29432 * 179.97438 * 4 3 2 26 26 H 0.96700 * 114.00176 * 60.00514 * 8 6 5 27 27 H 1.00911 * 111.00321 * 296.04456 * 11 9 6 28 28 H 1.00900 * 111.00459 * 60.00256 * 11 9 6 29 29 H 0.96999 * 119.99873 * 180.02562 * 15 14 12 30 30 H 1.08006 * 125.89071 * 180.26089 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2594 1.1080 0.0000 4 6 3.5460 0.7044 0.0006 5 6 3.5460 -0.7046 0.0003 6 6 4.7606 -1.5966 0.0013 7 1 4.5024 -2.5624 -0.4330 8 8 5.7983 -0.9891 -0.7709 9 6 5.2451 -1.7969 1.4387 10 1 5.5033 -0.8310 1.8730 11 7 4.1784 -2.4213 2.2325 12 6 6.4601 -2.6884 1.4396 13 1 6.8481 -3.0732 0.5082 14 6 7.0763 -3.0127 2.6297 15 7 6.6040 -2.5435 3.7639 16 14 8.5819 -4.1183 2.6308 17 1 9.8066 -3.2870 2.5101 18 1 8.6296 -4.8883 3.8998 19 1 8.5066 -5.0585 1.4838 20 6 2.2593 -1.1082 0.0002 21 1 -0.3634 0.0004 1.0277 22 1 -0.3634 0.8899 -0.5141 23 1 -0.3634 -0.8902 -0.5135 24 1 1.9171 2.1324 0.0004 25 1 4.4165 1.3435 0.0003 26 1 6.0791 -0.1245 -0.4413 27 1 3.3757 -1.8137 2.3010 28 1 3.9210 -3.3188 1.8499 29 1 7.0378 -2.7714 4.6011 30 1 1.9170 -2.1325 0.0040 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259691078.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:12 Heat of formation + Delta-G solvation = 5.481478 kcal Electronic energy + Delta-G solvation = -13929.538182 eV Core-core repulsion = 11532.941335 eV Total energy + Delta-G solvation = -2396.596847 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.84757 -36.70493 -33.44819 -32.48586 -31.16673 -28.64067 -26.81426 -25.95392 -23.97360 -20.72530 -19.87493 -19.03774 -17.24567 -16.11313 -15.19267 -14.99049 -14.45969 -14.20580 -13.79620 -13.45517 -13.17350 -12.62866 -12.31227 -12.14078 -11.96798 -11.47744 -11.13781 -10.74004 -10.64051 -10.35752 -9.96187 -9.29637 -8.78746 -8.26976 -8.10788 -7.68205 -6.76055 -5.71555 -3.83912 2.57550 3.21072 3.42123 3.43802 3.49961 3.54632 4.61526 4.77447 5.12242 5.23833 5.34130 5.44478 5.49848 5.64401 5.84324 5.98301 6.32738 6.48969 6.57064 6.77008 6.89981 7.34790 7.54875 7.67034 7.73402 8.09293 8.35694 8.60607 8.87703 9.18997 9.35237 9.83402 11.33175 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.056535 B = 0.008036 C = 0.007574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 495.150403 B = 3483.461281 C = 3696.007429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.457 5.457 3 C -0.025 4.025 4 C -0.187 4.187 5 C -0.174 4.174 6 C 0.143 3.857 7 H 0.080 0.920 8 O -0.556 6.556 9 C 0.208 3.792 10 H 0.035 0.965 11 N -0.807 5.807 12 C -0.525 4.525 13 H 0.056 0.944 14 C 0.080 3.920 15 N -0.852 5.852 16 Si 0.882 3.118 17 H -0.283 1.283 18 H -0.289 1.289 19 H -0.276 1.276 20 C -0.022 4.022 21 H 0.068 0.932 22 H 0.077 0.923 23 H 0.078 0.922 24 H 0.155 0.845 25 H 0.132 0.868 26 H 0.364 0.636 27 H 0.298 0.702 28 H 0.312 0.688 29 H 0.252 0.748 30 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.446 5.697 -6.484 14.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.134 5.134 3 C -0.154 4.154 4 C -0.212 4.212 5 C -0.181 4.181 6 C 0.081 3.919 7 H 0.098 0.902 8 O -0.358 6.358 9 C 0.098 3.902 10 H 0.053 0.947 11 N -0.334 5.334 12 C -0.564 4.564 13 H 0.075 0.925 14 C -0.126 4.126 15 N -0.488 5.488 16 Si 0.710 3.290 17 H -0.209 1.209 18 H -0.216 1.216 19 H -0.201 1.201 20 C -0.150 4.150 21 H 0.087 0.913 22 H 0.096 0.904 23 H 0.097 0.903 24 H 0.173 0.827 25 H 0.149 0.851 26 H 0.210 0.790 27 H 0.109 0.891 28 H 0.123 0.877 29 H 0.062 0.938 30 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -11.339 5.167 -6.030 13.843 hybrid contribution 0.138 -0.020 -0.391 0.416 sum -11.201 5.147 -6.421 13.899 Atomic orbital electron populations 1.21910 0.78098 1.03653 1.02797 1.43848 1.05589 1.06203 1.57784 1.21650 0.90566 0.91081 1.12110 1.20679 0.95740 0.94726 1.10043 1.20693 0.95097 0.95034 1.07274 1.21525 0.82062 0.91963 0.96365 0.90247 1.86442 1.56108 1.37386 1.55877 1.19574 0.90299 0.96242 0.84059 0.94719 1.59113 1.11014 1.05026 1.58251 1.20949 1.10903 1.31963 0.92626 0.92534 1.24965 0.96254 0.95564 0.95790 1.70132 1.38433 1.43127 0.97096 0.86796 0.83971 0.81127 0.77095 1.20932 1.21553 1.20103 1.21504 0.90035 0.91027 1.12472 0.91331 0.90424 0.90315 0.82713 0.85058 0.78981 0.89144 0.87671 0.93808 0.82756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.70 11.12 59.84 0.67 1.36 16 2 N -0.46 -6.34 3.15 -124.53 -0.39 -6.73 16 3 C -0.03 -0.36 11.43 -16.75 -0.19 -0.56 16 4 C -0.19 -3.21 10.25 -39.78 -0.41 -3.61 16 5 C -0.17 -3.27 4.40 -104.82 -0.46 -3.73 16 6 C 0.14 3.11 3.12 -27.88 -0.09 3.02 16 7 H 0.08 1.77 8.14 -51.93 -0.42 1.35 16 8 O -0.56 -12.21 12.82 -35.23 -0.45 -12.66 16 9 C 0.21 5.28 2.43 -68.87 -0.17 5.11 16 10 H 0.03 0.98 8.14 -51.93 -0.42 0.56 16 11 N -0.81 -19.45 8.46 -5.66 -0.05 -19.50 16 12 C -0.53 -14.96 8.39 -34.44 -0.29 -15.25 16 13 H 0.06 1.64 7.70 -52.49 -0.40 1.24 16 14 C 0.08 2.31 5.39 -17.82 -0.10 2.21 16 15 N -0.85 -25.70 12.77 55.43 0.71 -24.99 16 16 Si 0.88 22.14 29.54 -169.99 -5.02 17.11 16 17 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 18 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 19 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 20 C -0.02 -0.35 10.64 -16.75 -0.18 -0.53 16 21 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 22 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 23 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.16 1.73 8.06 -52.48 -0.42 1.31 16 25 H 0.13 2.10 7.70 -52.49 -0.40 1.70 16 26 H 0.36 6.99 8.30 45.56 0.38 7.37 16 27 H 0.30 6.60 7.57 -39.29 -0.30 6.30 16 28 H 0.31 7.17 8.99 -39.29 -0.35 6.81 16 29 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 30 H 0.16 2.24 8.06 -52.48 -0.42 1.81 16 LS Contribution 260.62 15.07 3.93 3.93 Total: -1.00 -33.25 260.62 -5.66 -38.92 By element: Atomic # 1 Polarization: 19.07 SS G_CDS: -3.17 Total: 15.90 kcal Atomic # 6 Polarization: -10.76 SS G_CDS: -1.21 Total: -11.98 kcal Atomic # 7 Polarization: -51.49 SS G_CDS: 0.27 Total: -51.22 kcal Atomic # 8 Polarization: -12.21 SS G_CDS: -0.45 Total: -12.66 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -33.25 -5.66 -38.92 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259691078.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.397 kcal (2) G-P(sol) polarization free energy of solvation -33.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds