Wall clock time and date at job start Mon Mar 30 2020 02:31:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36342 * 125.63941 * 2 1 4 4 C 1.34846 * 108.22051 * 179.97438 * 3 2 1 5 5 C 1.40894 * 107.41755 * 0.02562 * 4 3 2 6 6 C 1.50703 * 126.29252 * 180.02562 * 5 4 3 7 7 H 1.08995 * 109.46898 * 204.97565 * 6 5 4 8 8 O 1.42903 * 109.46794 * 324.97455 * 6 5 4 9 9 C 1.52998 * 109.47208 * 84.97344 * 6 5 4 10 10 H 1.09001 * 109.47099 * 300.00286 * 9 6 5 11 11 N 1.46897 * 109.47082 * 60.00056 * 9 6 5 12 12 C 1.50694 * 109.47216 * 180.02562 * 9 6 5 13 13 H 1.07996 * 119.99915 * 0.02562 * 12 9 6 14 14 C 1.37883 * 120.00090 * 180.02562 * 12 9 6 15 15 N 1.31517 * 119.99753 * 359.97438 * 14 12 9 16 16 Si 1.86795 * 119.99834 * 179.97438 * 14 12 9 17 17 H 1.48507 * 109.47014 * 90.00372 * 16 14 12 18 18 H 1.48507 * 109.46968 * 209.99758 * 16 14 12 19 19 H 1.48499 * 109.47543 * 329.99989 * 16 14 12 20 20 C 1.34850 * 107.41649 * 359.97438 * 5 4 3 21 21 H 1.09005 * 109.47321 * 270.02060 * 1 2 3 22 22 H 1.09004 * 109.47236 * 30.01738 * 1 2 3 23 23 H 1.09002 * 109.47737 * 150.02283 * 1 2 3 24 24 H 1.08003 * 125.88649 * 0.02562 * 3 2 1 25 25 H 1.07995 * 126.29432 * 179.97438 * 4 3 2 26 26 H 0.96700 * 114.00176 * 60.00514 * 8 6 5 27 27 H 1.00911 * 111.00321 * 296.04456 * 11 9 6 28 28 H 1.00900 * 111.00459 * 60.00256 * 11 9 6 29 29 H 0.96999 * 119.99873 * 180.02562 * 15 14 12 30 30 H 1.08006 * 125.89071 * 180.26089 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2594 1.1080 0.0000 4 6 3.5460 0.7044 0.0006 5 6 3.5460 -0.7046 0.0003 6 6 4.7606 -1.5966 0.0013 7 1 4.5024 -2.5624 -0.4330 8 8 5.7983 -0.9891 -0.7709 9 6 5.2451 -1.7969 1.4387 10 1 5.5033 -0.8310 1.8730 11 7 4.1784 -2.4213 2.2325 12 6 6.4601 -2.6884 1.4396 13 1 6.8481 -3.0732 0.5082 14 6 7.0763 -3.0127 2.6297 15 7 6.6040 -2.5435 3.7639 16 14 8.5819 -4.1183 2.6308 17 1 9.8066 -3.2870 2.5101 18 1 8.6296 -4.8883 3.8998 19 1 8.5066 -5.0585 1.4838 20 6 2.2593 -1.1082 0.0002 21 1 -0.3634 0.0004 1.0277 22 1 -0.3634 0.8899 -0.5141 23 1 -0.3634 -0.8902 -0.5135 24 1 1.9171 2.1324 0.0004 25 1 4.4165 1.3435 0.0003 26 1 6.0791 -0.1245 -0.4413 27 1 3.3757 -1.8137 2.3010 28 1 3.9210 -3.3188 1.8499 29 1 7.0378 -2.7714 4.6011 30 1 1.9170 -2.1325 0.0040 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259691078.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:12 Heat of formation + Delta-G solvation = -20.538160 kcal Electronic energy + Delta-G solvation = -13930.666478 eV Core-core repulsion = 11532.941335 eV Total energy + Delta-G solvation = -2397.725143 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.04769 -38.43309 -35.43359 -33.80319 -33.04037 -29.96584 -28.40547 -27.55713 -25.58974 -22.55261 -21.05548 -20.47628 -18.76507 -17.95720 -16.92584 -16.47422 -16.04457 -15.91236 -15.28609 -15.03753 -14.59586 -14.11173 -13.63579 -13.31430 -13.14763 -13.08406 -12.78367 -12.69132 -12.57753 -12.23043 -11.91829 -11.21803 -10.79597 -10.48916 -9.33306 -8.96851 -8.64926 -7.91556 -6.11781 1.40089 1.44612 1.45013 1.55497 2.08529 2.21052 2.51467 3.30279 3.89529 4.04687 4.22015 4.29731 4.49125 4.50412 4.56769 4.63352 4.74464 4.83689 4.89139 5.30642 5.45344 5.74475 5.84253 6.06288 6.26028 6.33914 6.61761 6.69113 7.03859 7.20718 7.35597 7.59631 9.11377 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.056535 B = 0.008036 C = 0.007574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 495.150403 B = 3483.461281 C = 3696.007429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.451 5.451 3 C -0.010 4.010 4 C -0.223 4.223 5 C -0.209 4.209 6 C 0.156 3.844 7 H 0.070 0.930 8 O -0.570 6.570 9 C 0.217 3.783 10 H -0.002 1.002 11 N -0.813 5.813 12 C -0.542 4.542 13 H 0.044 0.956 14 C 0.032 3.968 15 N -0.884 5.884 16 Si 0.947 3.053 17 H -0.278 1.278 18 H -0.284 1.284 19 H -0.273 1.273 20 C -0.020 4.020 21 H 0.080 0.920 22 H 0.103 0.897 23 H 0.093 0.907 24 H 0.193 0.807 25 H 0.129 0.871 26 H 0.374 0.626 27 H 0.310 0.690 28 H 0.319 0.681 29 H 0.253 0.747 30 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.945 5.963 -6.938 15.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.126 5.126 3 C -0.140 4.140 4 C -0.247 4.247 5 C -0.216 4.216 6 C 0.094 3.906 7 H 0.087 0.913 8 O -0.373 6.373 9 C 0.106 3.894 10 H 0.016 0.984 11 N -0.342 5.342 12 C -0.580 4.580 13 H 0.063 0.937 14 C -0.171 4.171 15 N -0.521 5.521 16 Si 0.773 3.227 17 H -0.204 1.204 18 H -0.210 1.210 19 H -0.197 1.197 20 C -0.151 4.151 21 H 0.099 0.901 22 H 0.122 0.878 23 H 0.112 0.888 24 H 0.210 0.790 25 H 0.147 0.853 26 H 0.221 0.779 27 H 0.122 0.878 28 H 0.130 0.870 29 H 0.062 0.938 30 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -12.865 5.441 -6.494 15.405 hybrid contribution 0.523 -0.050 -0.279 0.595 sum -12.343 5.391 -6.773 15.076 Atomic orbital electron populations 1.22290 0.74793 1.05809 1.04254 1.44166 1.07532 1.05168 1.55756 1.22150 0.89662 0.92751 1.09446 1.20864 0.97375 0.94215 1.12259 1.20411 0.94888 0.95521 1.10732 1.21088 0.83361 0.92550 0.93558 0.91254 1.86382 1.56702 1.38138 1.56123 1.19287 0.90055 0.93712 0.86334 0.98402 1.58910 1.11308 1.05570 1.58424 1.21246 1.12317 1.32280 0.92202 0.93739 1.25683 0.99052 0.96935 0.95444 1.70254 1.39896 1.44374 0.97528 0.85768 0.80465 0.79299 0.77158 1.20400 1.21003 1.19746 1.21654 0.89648 0.92397 1.11369 0.90149 0.87825 0.88799 0.79007 0.85261 0.77920 0.87808 0.86974 0.93843 0.81357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.95 11.12 127.77 1.42 2.37 16 2 N -0.45 -11.16 3.15 -547.89 -1.72 -12.88 16 3 C -0.01 -0.26 11.43 83.21 0.95 0.70 16 4 C -0.22 -7.52 10.25 22.14 0.23 -7.29 16 5 C -0.21 -7.80 4.40 -19.99 -0.09 -7.88 16 6 C 0.16 6.95 3.12 29.85 0.09 7.04 16 7 H 0.07 3.16 8.14 -2.39 -0.02 3.14 16 8 O -0.57 -25.69 12.82 -148.98 -1.91 -27.59 16 9 C 0.22 11.27 2.43 44.17 0.11 11.37 16 10 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 11 N -0.81 -39.64 8.46 -171.82 -1.45 -41.09 16 12 C -0.54 -31.44 8.39 25.60 0.21 -31.23 16 13 H 0.04 2.63 7.70 -2.91 -0.02 2.61 16 14 C 0.03 1.84 5.39 84.66 0.46 2.29 16 15 N -0.88 -53.91 12.77 21.45 0.27 -53.64 16 16 Si 0.95 45.87 29.54 68.60 2.03 47.90 16 17 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 18 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 19 H -0.27 -12.95 7.11 99.48 0.71 -12.24 16 20 C -0.02 -0.62 10.64 83.21 0.89 0.26 16 21 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 22 H 0.10 0.95 8.14 -2.38 -0.02 0.93 16 23 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 24 H 0.19 3.50 8.06 -2.91 -0.02 3.47 16 25 H 0.13 4.22 7.70 -2.91 -0.02 4.19 16 26 H 0.37 14.93 8.30 -74.06 -0.61 14.31 16 27 H 0.31 13.75 7.57 -89.69 -0.68 13.07 16 28 H 0.32 14.71 8.99 -89.69 -0.81 13.90 16 29 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 30 H 0.17 4.58 8.06 -2.91 -0.02 4.56 16 Total: -1.00 -71.67 260.62 0.54 -71.13 By element: Atomic # 1 Polarization: 39.49 SS G_CDS: -0.94 Total: 38.55 kcal Atomic # 6 Polarization: -26.64 SS G_CDS: 4.27 Total: -22.37 kcal Atomic # 7 Polarization: -104.71 SS G_CDS: -2.91 Total: -107.61 kcal Atomic # 8 Polarization: -25.69 SS G_CDS: -1.91 Total: -27.59 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Total: -71.67 0.54 -71.13 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259691078.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.592 kcal (2) G-P(sol) polarization free energy of solvation -71.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds