Wall clock time and date at job start Mon Mar 30 2020 02:31:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.36344 * 125.63643 * 2 1 4 4 C 1.34853 * 108.21994 * 179.76184 * 3 2 1 5 5 C 1.40896 * 107.41312 * 0.42388 * 4 3 2 6 6 C 1.50701 * 126.28583 * 179.83169 * 5 4 3 7 7 H 1.09003 * 109.47012 * 204.69160 * 6 5 4 8 8 O 1.42894 * 109.47652 * 324.69296 * 6 5 4 9 9 C 1.52999 * 109.47150 * 84.69516 * 6 5 4 10 10 H 1.09009 * 109.47378 * 64.99736 * 9 6 5 11 11 N 1.46902 * 109.47082 * 304.99985 * 9 6 5 12 12 C 1.50702 * 109.47525 * 184.99456 * 9 6 5 13 13 H 1.08002 * 119.99441 * 0.02562 * 12 9 6 14 14 C 1.37871 * 120.00075 * 180.02562 * 12 9 6 15 15 N 1.31514 * 120.00481 * 359.97438 * 14 12 9 16 16 Si 1.86803 * 119.99886 * 179.73007 * 14 12 9 17 17 H 1.48494 * 109.47225 * 180.27306 * 16 14 12 18 18 H 1.48506 * 109.46866 * 300.27330 * 16 14 12 19 19 H 1.48498 * 109.47306 * 60.26614 * 16 14 12 20 20 C 1.34849 * 107.41941 * 359.57212 * 5 4 3 21 21 H 1.09007 * 109.47389 * 269.95860 * 1 2 3 22 22 H 1.08997 * 109.47169 * 29.96387 * 1 2 3 23 23 H 1.09001 * 109.47005 * 149.96122 * 1 2 3 24 24 H 1.08000 * 125.88815 * 0.02870 * 3 2 1 25 25 H 1.08000 * 126.29294 * 180.30057 * 4 3 2 26 26 H 0.96705 * 114.00005 * 59.99812 * 8 6 5 27 27 H 1.00902 * 110.99590 * 299.99282 * 11 9 6 28 28 H 1.00896 * 111.00313 * 63.95129 * 11 9 6 29 29 H 0.97005 * 119.99656 * 359.72741 * 15 14 12 30 30 H 1.07992 * 125.88921 * 180.23378 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2593 1.1081 0.0000 4 6 3.5460 0.7045 0.0053 5 6 3.5460 -0.7045 -0.0012 6 6 4.7607 -1.5964 -0.0021 7 1 4.5021 -2.5620 -0.4366 8 8 5.7974 -0.9886 -0.7752 9 6 5.2469 -1.7974 1.4346 10 1 4.4907 -2.3406 2.0015 11 7 5.4814 -0.4889 2.0597 12 6 6.5306 -2.5868 1.4248 13 1 6.9571 -2.9122 0.4874 14 6 7.1603 -2.8936 2.6123 15 7 6.6411 -2.4969 3.7536 16 14 8.7474 -3.8786 2.6005 17 1 9.2162 -4.0788 3.9953 18 1 8.5058 -5.1990 1.9651 19 1 9.7820 -3.1413 1.8316 20 6 2.2593 -1.1081 -0.0007 21 1 -0.3634 -0.0007 1.0277 22 1 -0.3633 0.8903 -0.5133 23 1 -0.3633 -0.8897 -0.5144 24 1 1.9171 2.1324 0.0004 25 1 4.4165 1.3437 0.0113 26 1 6.0785 -0.1240 -0.4455 27 1 6.1792 0.0344 1.5523 28 1 4.6222 0.0343 2.1368 29 1 5.8171 -1.9850 3.7597 30 1 1.9171 -2.1324 -0.0012 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259691084.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:15 Heat of formation + Delta-G solvation = 0.522189 kcal Electronic energy + Delta-G solvation = -14023.485154 eV Core-core repulsion = 11626.673257 eV Total energy + Delta-G solvation = -2396.811898 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.95568 -37.07142 -33.46505 -32.58919 -30.75317 -29.06605 -26.88407 -25.97936 -23.75077 -20.70612 -20.03003 -19.07769 -17.32426 -16.50700 -15.31301 -15.12165 -14.58364 -14.20323 -13.71081 -13.58973 -13.29475 -12.71717 -12.43887 -12.25145 -11.83464 -11.48886 -11.27530 -10.85018 -10.58287 -10.26045 -9.95566 -9.34083 -8.39202 -8.18554 -8.14619 -7.86255 -7.09446 -6.00617 -3.81033 2.49167 3.12972 3.31570 3.57794 3.60270 3.78560 4.71002 4.73861 5.06161 5.16630 5.28217 5.37804 5.46879 5.64072 5.74638 5.87762 6.16630 6.34910 6.44367 6.63475 6.83436 7.24106 7.32855 7.49261 7.60878 8.19473 8.47409 8.55302 8.88112 8.97128 9.24750 10.02362 11.39135 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.058494 B = 0.007948 C = 0.007716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 478.564951 B = 3522.243203 C = 3627.819972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.456 5.456 3 C -0.023 4.023 4 C -0.190 4.190 5 C -0.178 4.178 6 C 0.147 3.853 7 H 0.086 0.914 8 O -0.550 6.550 9 C 0.189 3.811 10 H 0.029 0.971 11 N -0.829 5.829 12 C -0.604 4.604 13 H 0.050 0.950 14 C 0.034 3.966 15 N -0.899 5.899 16 Si 1.064 2.936 17 H -0.286 1.286 18 H -0.292 1.292 19 H -0.291 1.291 20 C -0.018 4.018 21 H 0.068 0.932 22 H 0.078 0.922 23 H 0.079 0.921 24 H 0.156 0.844 25 H 0.130 0.870 26 H 0.358 0.642 27 H 0.318 0.682 28 H 0.305 0.695 29 H 0.288 0.712 30 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.343 6.158 -7.036 14.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.133 5.133 3 C -0.152 4.152 4 C -0.216 4.216 5 C -0.184 4.184 6 C 0.086 3.914 7 H 0.104 0.896 8 O -0.354 6.354 9 C 0.080 3.920 10 H 0.047 0.953 11 N -0.358 5.358 12 C -0.643 4.643 13 H 0.069 0.931 14 C -0.175 4.175 15 N -0.534 5.534 16 Si 0.894 3.106 17 H -0.212 1.212 18 H -0.219 1.219 19 H -0.217 1.217 20 C -0.146 4.146 21 H 0.087 0.913 22 H 0.097 0.903 23 H 0.098 0.902 24 H 0.174 0.826 25 H 0.148 0.852 26 H 0.204 0.796 27 H 0.130 0.870 28 H 0.116 0.884 29 H 0.101 0.899 30 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -10.414 4.524 -5.747 12.726 hybrid contribution -1.646 1.637 -1.587 2.812 sum -12.060 6.161 -7.334 15.401 Atomic orbital electron populations 1.21924 0.77964 1.03764 1.02843 1.43867 1.05685 1.06187 1.57592 1.21668 0.90549 0.91128 1.11863 1.20664 0.95725 0.94545 1.10628 1.20642 0.95168 0.94916 1.07707 1.21137 0.81696 0.92455 0.96159 0.89645 1.86509 1.56218 1.37102 1.55536 1.19727 0.97335 0.88257 0.86699 0.95291 1.59379 1.11498 1.06250 1.58685 1.21746 1.09641 1.37837 0.95050 0.93148 1.25582 1.02526 0.96945 0.92446 1.70547 1.21832 1.33808 1.27175 0.83651 0.75738 0.75840 0.75403 1.21203 1.21867 1.21749 1.21530 0.90048 0.91182 1.11880 0.91303 0.90326 0.90226 0.82619 0.85222 0.79570 0.86956 0.88357 0.89926 0.82512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.68 11.12 59.84 0.67 1.35 16 2 N -0.46 -6.26 3.15 -124.54 -0.39 -6.65 16 3 C -0.02 -0.32 11.43 -16.75 -0.19 -0.51 16 4 C -0.19 -3.14 8.82 -39.78 -0.35 -3.50 16 5 C -0.18 -3.31 4.50 -104.82 -0.47 -3.78 16 6 C 0.15 3.23 3.31 -27.88 -0.09 3.13 16 7 H 0.09 1.92 8.14 -51.93 -0.42 1.50 16 8 O -0.55 -12.16 12.57 -35.23 -0.44 -12.60 16 9 C 0.19 4.79 2.22 -68.86 -0.15 4.64 16 10 H 0.03 0.81 8.01 -51.92 -0.42 0.39 16 11 N -0.83 -19.49 7.53 -5.65 -0.04 -19.53 16 12 C -0.60 -17.44 8.33 -34.44 -0.29 -17.73 16 13 H 0.05 1.50 7.55 -52.49 -0.40 1.10 16 14 C 0.03 1.00 5.39 -17.82 -0.10 0.90 16 15 N -0.90 -28.06 13.51 55.43 0.75 -27.31 16 16 Si 1.06 26.30 29.90 -169.99 -5.08 21.22 16 17 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 18 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 20 C -0.02 -0.29 11.35 -16.75 -0.19 -0.48 16 21 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 22 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 24 H 0.16 1.68 8.06 -52.49 -0.42 1.26 16 25 H 0.13 2.01 7.71 -52.49 -0.40 1.60 16 26 H 0.36 7.00 6.97 45.56 0.32 7.32 16 27 H 0.32 7.18 7.66 -39.29 -0.30 6.87 16 28 H 0.30 6.56 7.01 -39.29 -0.28 6.29 16 29 H 0.29 9.03 6.39 -40.82 -0.26 8.77 16 30 H 0.16 2.30 8.06 -52.49 -0.42 1.88 16 LS Contribution 254.43 15.07 3.83 3.83 Total: -1.00 -33.79 254.43 -5.61 -39.40 By element: Atomic # 1 Polarization: 20.69 SS G_CDS: -3.07 Total: 17.62 kcal Atomic # 6 Polarization: -14.81 SS G_CDS: -1.17 Total: -15.98 kcal Atomic # 7 Polarization: -53.81 SS G_CDS: 0.31 Total: -53.49 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: -0.44 Total: -12.60 kcal Atomic # 14 Polarization: 26.30 SS G_CDS: -5.08 Total: 21.22 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -33.79 -5.61 -39.40 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259691084.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.922 kcal (2) G-P(sol) polarization free energy of solvation -33.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds