Wall clock time and date at job start Mon Mar 30 2020 02:31:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.36344 * 125.63643 * 2 1 4 4 C 1.34853 * 108.21994 * 179.76184 * 3 2 1 5 5 C 1.40896 * 107.41312 * 0.42388 * 4 3 2 6 6 C 1.50701 * 126.28583 * 179.83169 * 5 4 3 7 7 H 1.09003 * 109.47012 * 204.69160 * 6 5 4 8 8 O 1.42894 * 109.47652 * 324.69296 * 6 5 4 9 9 C 1.52999 * 109.47150 * 84.69516 * 6 5 4 10 10 H 1.09009 * 109.47378 * 64.99736 * 9 6 5 11 11 N 1.46902 * 109.47082 * 304.99985 * 9 6 5 12 12 C 1.50702 * 109.47525 * 184.99456 * 9 6 5 13 13 H 1.08002 * 119.99441 * 0.02562 * 12 9 6 14 14 C 1.37871 * 120.00075 * 180.02562 * 12 9 6 15 15 N 1.31514 * 120.00481 * 359.97438 * 14 12 9 16 16 Si 1.86803 * 119.99886 * 179.73007 * 14 12 9 17 17 H 1.48494 * 109.47225 * 180.27306 * 16 14 12 18 18 H 1.48506 * 109.46866 * 300.27330 * 16 14 12 19 19 H 1.48498 * 109.47306 * 60.26614 * 16 14 12 20 20 C 1.34849 * 107.41941 * 359.57212 * 5 4 3 21 21 H 1.09007 * 109.47389 * 269.95860 * 1 2 3 22 22 H 1.08997 * 109.47169 * 29.96387 * 1 2 3 23 23 H 1.09001 * 109.47005 * 149.96122 * 1 2 3 24 24 H 1.08000 * 125.88815 * 0.02870 * 3 2 1 25 25 H 1.08000 * 126.29294 * 180.30057 * 4 3 2 26 26 H 0.96705 * 114.00005 * 59.99812 * 8 6 5 27 27 H 1.00902 * 110.99590 * 299.99282 * 11 9 6 28 28 H 1.00896 * 111.00313 * 63.95129 * 11 9 6 29 29 H 0.97005 * 119.99656 * 359.72741 * 15 14 12 30 30 H 1.07992 * 125.88921 * 180.23378 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2593 1.1081 0.0000 4 6 3.5460 0.7045 0.0053 5 6 3.5460 -0.7045 -0.0012 6 6 4.7607 -1.5964 -0.0021 7 1 4.5021 -2.5620 -0.4366 8 8 5.7974 -0.9886 -0.7752 9 6 5.2469 -1.7974 1.4346 10 1 4.4907 -2.3406 2.0015 11 7 5.4814 -0.4889 2.0597 12 6 6.5306 -2.5868 1.4248 13 1 6.9571 -2.9122 0.4874 14 6 7.1603 -2.8936 2.6123 15 7 6.6411 -2.4969 3.7536 16 14 8.7474 -3.8786 2.6005 17 1 9.2162 -4.0788 3.9953 18 1 8.5058 -5.1990 1.9651 19 1 9.7820 -3.1413 1.8316 20 6 2.2593 -1.1081 -0.0007 21 1 -0.3634 -0.0007 1.0277 22 1 -0.3633 0.8903 -0.5133 23 1 -0.3633 -0.8897 -0.5144 24 1 1.9171 2.1324 0.0004 25 1 4.4165 1.3437 0.0113 26 1 6.0785 -0.1240 -0.4455 27 1 6.1792 0.0344 1.5523 28 1 4.6222 0.0343 2.1368 29 1 5.8171 -1.9850 3.7597 30 1 1.9171 -2.1324 -0.0012 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259691084.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:15 Heat of formation + Delta-G solvation = -25.484223 kcal Electronic energy + Delta-G solvation = -14024.612877 eV Core-core repulsion = 11626.673257 eV Total energy + Delta-G solvation = -2397.939620 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.15014 -38.82540 -35.50273 -33.79887 -32.70835 -30.42968 -28.39623 -27.45743 -25.54646 -22.58864 -21.15098 -20.50349 -19.00911 -18.21109 -17.09737 -16.51639 -16.01631 -15.74127 -15.56820 -15.14740 -14.73919 -13.96347 -13.63855 -13.49386 -13.38901 -13.00723 -12.95721 -12.66814 -12.46729 -12.13433 -11.89222 -11.14653 -10.53446 -10.40244 -9.38079 -9.26547 -8.88940 -8.29880 -6.16118 1.32761 1.57382 1.65746 1.84953 2.00151 2.14006 2.67912 3.36477 3.76670 3.97883 4.16010 4.22103 4.26174 4.44686 4.45385 4.53154 4.69173 4.73611 4.80074 5.18234 5.26111 5.56444 5.97320 6.06110 6.24561 6.32534 6.54608 6.73995 6.84363 6.90716 7.15248 7.75045 9.04072 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.058494 B = 0.007948 C = 0.007716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 478.564951 B = 3522.243203 C = 3627.819972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.450 5.450 3 C -0.007 4.007 4 C -0.216 4.216 5 C -0.210 4.210 6 C 0.159 3.841 7 H 0.069 0.931 8 O -0.562 6.562 9 C 0.195 3.805 10 H -0.003 1.003 11 N -0.830 5.830 12 C -0.615 4.615 13 H 0.036 0.964 14 C -0.015 4.015 15 N -0.924 5.924 16 Si 1.111 2.889 17 H -0.286 1.286 18 H -0.277 1.277 19 H -0.277 1.277 20 C -0.025 4.025 21 H 0.080 0.920 22 H 0.106 0.894 23 H 0.092 0.908 24 H 0.196 0.804 25 H 0.133 0.867 26 H 0.368 0.632 27 H 0.324 0.676 28 H 0.318 0.682 29 H 0.276 0.724 30 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.438 7.153 -7.666 16.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.125 5.125 3 C -0.137 4.137 4 C -0.241 4.241 5 C -0.217 4.217 6 C 0.098 3.902 7 H 0.087 0.913 8 O -0.367 6.367 9 C 0.085 3.915 10 H 0.015 0.985 11 N -0.361 5.361 12 C -0.654 4.654 13 H 0.055 0.945 14 C -0.218 4.218 15 N -0.560 5.560 16 Si 0.935 3.065 17 H -0.212 1.212 18 H -0.203 1.203 19 H -0.203 1.203 20 C -0.156 4.156 21 H 0.098 0.902 22 H 0.124 0.876 23 H 0.111 0.889 24 H 0.212 0.788 25 H 0.151 0.849 26 H 0.216 0.784 27 H 0.137 0.863 28 H 0.131 0.869 29 H 0.088 0.912 30 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -11.549 5.538 -6.394 14.315 hybrid contribution -1.418 1.370 -1.438 2.440 sum -12.967 6.908 -7.832 16.649 Atomic orbital electron populations 1.22302 0.74743 1.05899 1.04257 1.44174 1.07588 1.05139 1.55618 1.22223 0.89711 0.92734 1.09069 1.20794 0.97333 0.93548 1.12425 1.20338 0.94629 0.95671 1.11076 1.20715 0.83186 0.92933 0.93414 0.91335 1.86458 1.56727 1.37851 1.55631 1.19453 0.95001 0.88364 0.88719 0.98493 1.59132 1.12454 1.05776 1.58700 1.22057 1.10781 1.38166 0.94405 0.94520 1.26957 1.05264 0.97429 0.92125 1.70672 1.22069 1.35325 1.27937 0.83020 0.72524 0.75355 0.75616 1.21182 1.20263 1.20311 1.21689 0.89995 0.92551 1.11345 0.90179 0.87572 0.88900 0.78756 0.84949 0.78433 0.86348 0.86854 0.91227 0.81611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.94 11.12 127.77 1.42 2.36 16 2 N -0.45 -11.06 3.15 -547.92 -1.72 -12.79 16 3 C -0.01 -0.17 11.43 83.21 0.95 0.78 16 4 C -0.22 -6.85 8.82 22.14 0.20 -6.66 16 5 C -0.21 -7.78 4.50 -19.99 -0.09 -7.87 16 6 C 0.16 7.13 3.31 29.85 0.10 7.23 16 7 H 0.07 3.21 8.14 -2.39 -0.02 3.19 16 8 O -0.56 -25.12 12.57 -148.98 -1.87 -26.99 16 9 C 0.19 10.12 2.22 44.17 0.10 10.22 16 10 H 0.00 -0.16 8.01 -2.38 -0.02 -0.18 16 11 N -0.83 -39.53 7.53 -171.79 -1.29 -40.82 16 12 C -0.62 -36.24 8.33 25.60 0.21 -36.03 16 13 H 0.04 2.21 7.55 -2.91 -0.02 2.19 16 14 C -0.02 -0.89 5.39 84.65 0.46 -0.44 16 15 N -0.92 -58.49 13.51 21.45 0.29 -58.20 16 16 Si 1.11 53.10 29.90 68.60 2.05 55.15 16 17 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 18 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 19 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 20 C -0.03 -0.80 11.35 83.21 0.94 0.14 16 21 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 22 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 23 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 24 H 0.20 3.27 8.06 -2.91 -0.02 3.24 16 25 H 0.13 3.97 7.71 -2.91 -0.02 3.94 16 26 H 0.37 14.49 6.97 -74.05 -0.52 13.98 16 27 H 0.32 14.71 7.66 -89.69 -0.69 14.02 16 28 H 0.32 13.76 7.01 -89.70 -0.63 13.13 16 29 H 0.28 17.71 6.39 -92.70 -0.59 17.12 16 30 H 0.17 4.77 8.06 -2.91 -0.02 4.75 16 Total: -1.00 -73.33 254.43 1.25 -72.09 By element: Atomic # 1 Polarization: 42.32 SS G_CDS: -0.49 Total: 41.82 kcal Atomic # 6 Polarization: -34.54 SS G_CDS: 4.29 Total: -30.25 kcal Atomic # 7 Polarization: -109.08 SS G_CDS: -2.73 Total: -111.81 kcal Atomic # 8 Polarization: -25.12 SS G_CDS: -1.87 Total: -26.99 kcal Atomic # 14 Polarization: 53.10 SS G_CDS: 2.05 Total: 55.15 kcal Total: -73.33 1.25 -72.09 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259691084.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.602 kcal (2) G-P(sol) polarization free energy of solvation -73.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds