Wall clock time and date at job start Mon Mar 30 2020 02:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47224 * 2 1 4 4 C 1.52994 * 109.47100 * 239.99506 * 2 1 3 5 5 C 1.53001 * 109.46948 * 185.79646 * 4 2 1 6 6 H 1.08996 * 110.50534 * 308.56515 * 5 4 2 7 7 C 1.51559 * 110.55925 * 71.46339 * 5 4 2 8 8 O 1.21287 * 127.13996 * 298.57292 * 7 5 4 9 9 N 1.34783 * 105.71586 * 118.57118 * 7 5 4 10 10 N 1.39178 * 111.43548 * 0.02562 * 9 7 5 11 11 C 1.31435 * 112.34929 * 359.97438 * 10 9 7 12 12 C 1.39105 * 126.64607 * 180.02562 * 11 10 9 13 13 H 1.08002 * 119.99668 * 179.97438 * 12 11 10 14 14 C 1.40582 * 120.00306 * 359.97358 * 12 11 10 15 15 N 1.30568 * 119.99784 * 359.97438 * 14 12 11 16 16 Si 1.86791 * 120.00255 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47334 * 90.00059 * 16 14 12 18 18 H 1.48506 * 109.47155 * 209.99991 * 16 14 12 19 19 H 1.48495 * 109.47231 * 329.99523 * 16 14 12 20 20 H 1.09001 * 109.46775 * 55.05496 * 1 2 3 21 21 H 1.09001 * 109.46988 * 295.05590 * 1 2 3 22 22 H 1.08995 * 109.47375 * 175.05681 * 1 2 3 23 23 H 1.09002 * 109.46909 * 119.99701 * 2 1 3 24 24 H 1.08998 * 109.47136 * 60.00079 * 3 2 1 25 25 H 1.08999 * 109.47182 * 180.02562 * 3 2 1 26 26 H 1.08998 * 109.47008 * 300.00177 * 3 2 1 27 27 H 1.09001 * 109.47644 * 305.80525 * 4 2 1 28 28 H 1.08999 * 109.46875 * 65.80093 * 4 2 1 29 29 H 0.96999 * 124.28016 * 179.97438 * 9 7 5 30 30 H 0.96999 * 119.99807 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5631 -0.8487 -1.1784 6 1 4.0181 0.1202 -0.9730 7 6 3.9640 -1.8625 -0.1255 8 8 3.7364 -1.8113 1.0647 9 7 4.6260 -2.8328 -0.7865 10 7 4.6993 -2.5609 -2.1495 11 6 4.1089 -1.4301 -2.4660 12 6 4.0052 -0.8751 -3.7373 13 1 3.4927 0.0655 -3.8756 14 6 4.5673 -1.5384 -4.8419 15 7 5.1873 -2.6753 -4.6746 16 14 4.4274 -0.7934 -6.5491 17 1 5.5942 0.0901 -6.8009 18 1 4.4007 -1.8789 -7.5623 19 1 3.1761 0.0008 -6.6416 20 1 -0.3633 0.5887 -0.8424 21 1 -0.3633 0.4352 0.9310 22 1 -0.3634 -1.0238 -0.0885 23 1 1.8933 -0.5138 0.8900 24 1 1.6767 1.9563 0.8900 25 1 3.1300 1.4425 -0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.5943 -1.7146 -1.3026 28 1 1.7639 -0.1511 -2.1361 29 1 5.0042 -3.6206 -0.3654 30 1 5.5748 -3.1331 -5.4368 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259743326.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:27 Heat of formation + Delta-G solvation = -39.286221 kcal Electronic energy + Delta-G solvation = -14062.834190 eV Core-core repulsion = 11664.296070 eV Total energy + Delta-G solvation = -2398.538120 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.44710 -37.83457 -37.17361 -35.40094 -32.49258 -30.23310 -27.97306 -27.83311 -25.74378 -22.30905 -21.45792 -20.50408 -18.39477 -18.19660 -16.95494 -16.62408 -15.67820 -15.53492 -15.17244 -14.84482 -14.45349 -13.71133 -13.29100 -13.10048 -12.98218 -12.90192 -12.66636 -12.62151 -12.37312 -11.94654 -11.72730 -11.60309 -11.49597 -11.10915 -10.83150 -9.82671 -9.43630 -8.48838 -6.62099 1.22821 1.50991 1.59805 1.65453 2.25873 2.28090 2.67342 3.31785 3.57233 3.87374 4.03753 4.12358 4.25895 4.49440 4.66865 4.85618 4.86772 4.93206 5.06817 5.08567 5.12571 5.20490 5.33922 5.41512 5.53199 5.61908 6.06208 6.29266 6.69596 6.88949 7.42685 8.05731 8.43844 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.031882 B = 0.010677 C = 0.008567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.016715 B = 2621.908519 C = 3267.535019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.107 4.107 3 C -0.139 4.139 4 C -0.066 4.066 5 C -0.125 4.125 6 H 0.114 0.886 7 C 0.468 3.532 8 O -0.587 6.587 9 N -0.572 5.572 10 N -0.397 5.397 11 C 0.181 3.819 12 C -0.433 4.433 13 H 0.111 0.889 14 C 0.025 3.975 15 N -0.775 5.775 16 Si 0.994 3.006 17 H -0.264 1.264 18 H -0.276 1.276 19 H -0.246 1.246 20 H 0.068 0.932 21 H 0.065 0.935 22 H 0.045 0.955 23 H 0.056 0.944 24 H 0.064 0.936 25 H 0.041 0.959 26 H 0.069 0.931 27 H 0.038 0.962 28 H 0.088 0.912 29 H 0.414 0.586 30 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.863 6.570 -0.701 8.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.125 4.125 3 C -0.196 4.196 4 C -0.104 4.104 5 C -0.149 4.149 6 H 0.131 0.869 7 C 0.254 3.746 8 O -0.470 6.470 9 N -0.310 5.310 10 N -0.225 5.225 11 C 0.020 3.980 12 C -0.473 4.473 13 H 0.129 0.871 14 C -0.197 4.197 15 N -0.401 5.401 16 Si 0.814 3.186 17 H -0.189 1.189 18 H -0.201 1.201 19 H -0.169 1.169 20 H 0.087 0.913 21 H 0.084 0.916 22 H 0.064 0.936 23 H 0.075 0.925 24 H 0.083 0.917 25 H 0.060 0.940 26 H 0.088 0.912 27 H 0.057 0.943 28 H 0.107 0.893 29 H 0.255 0.745 30 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.393 5.650 -0.402 7.821 hybrid contribution 0.234 -0.116 0.150 0.301 sum -5.159 5.534 -0.252 7.570 Atomic orbital electron populations 1.21760 0.93514 1.01554 1.02617 1.21223 0.96940 0.97057 0.97297 1.21801 1.00344 0.94944 1.02557 1.21197 0.89566 1.00000 0.99668 1.21554 1.00021 0.99100 0.94200 0.86872 1.21829 0.78964 0.85512 0.88328 1.90557 1.61082 1.79871 1.15461 1.47934 1.52337 1.22535 1.08145 1.77433 1.35756 1.21895 0.87370 1.21807 0.91851 0.90910 0.93453 1.18975 1.31997 1.07405 0.88901 0.87125 1.27097 0.92635 0.94425 1.05535 1.69936 1.22578 1.13198 1.34400 0.85008 0.80385 0.78511 0.74710 1.18861 1.20087 1.16859 0.91289 0.91610 0.93605 0.92540 0.91657 0.94035 0.91229 0.94326 0.89341 0.74539 0.90380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.56 9.19 71.98 0.66 -2.90 16 2 C -0.11 -3.46 2.86 -10.80 -0.03 -3.49 16 3 C -0.14 -3.88 8.98 71.98 0.65 -3.23 16 4 C -0.07 -2.48 4.16 30.59 0.13 -2.35 16 5 C -0.13 -5.55 2.86 -11.77 -0.03 -5.58 16 6 H 0.11 4.76 6.32 -2.39 -0.02 4.75 16 7 C 0.47 22.71 8.03 87.93 0.71 23.41 16 8 O -0.59 -29.78 16.34 -3.05 -0.05 -29.83 16 9 N -0.57 -28.30 7.10 -172.80 -1.23 -29.53 16 10 N -0.40 -21.63 10.60 -46.96 -0.50 -22.13 16 11 C 0.18 9.15 6.37 43.07 0.27 9.42 16 12 C -0.43 -20.77 9.20 23.05 0.21 -20.56 16 13 H 0.11 4.67 7.86 -2.91 -0.02 4.65 16 14 C 0.03 1.18 5.51 85.45 0.47 1.65 16 15 N -0.78 -39.86 11.94 21.94 0.26 -39.60 16 16 Si 0.99 34.54 29.57 68.60 2.03 36.57 16 17 H -0.26 -8.93 7.11 99.48 0.71 -8.22 16 18 H -0.28 -9.47 7.11 99.48 0.71 -8.77 16 19 H -0.25 -7.91 7.11 99.48 0.71 -7.20 16 20 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 21 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 22 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 23 H 0.06 2.18 6.26 -2.39 -0.01 2.16 16 24 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 25 H 0.04 1.26 6.44 -2.39 -0.02 1.24 16 26 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 27 H 0.04 1.57 8.11 -2.39 -0.02 1.55 16 28 H 0.09 3.06 8.01 -2.39 -0.02 3.04 16 29 H 0.41 18.46 8.96 -213.91 -1.92 16.54 16 30 H 0.29 13.31 8.29 -92.71 -0.77 12.54 16 Total: -1.00 -61.19 255.00 2.78 -58.41 By element: Atomic # 1 Polarization: 30.50 SS G_CDS: -0.77 Total: 29.73 kcal Atomic # 6 Polarization: -6.65 SS G_CDS: 3.03 Total: -3.62 kcal Atomic # 7 Polarization: -89.80 SS G_CDS: -1.46 Total: -91.26 kcal Atomic # 8 Polarization: -29.78 SS G_CDS: -0.05 Total: -29.83 kcal Atomic # 14 Polarization: 34.54 SS G_CDS: 2.03 Total: 36.57 kcal Total: -61.19 2.78 -58.41 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259743326.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.127 kcal (2) G-P(sol) polarization free energy of solvation -61.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds