Wall clock time and date at job start Mon Mar 30 2020 02:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86793 * 120.00317 * 2 1 4 4 H 1.48505 * 109.46909 * 272.50041 * 3 2 1 5 5 H 1.48496 * 109.47239 * 32.49587 * 3 2 1 6 6 H 1.48502 * 109.47498 * 152.50101 * 3 2 1 7 7 C 1.37878 * 119.99476 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00468 * 5.83003 * 7 2 1 9 9 C 1.50701 * 119.99815 * 185.82434 * 7 2 1 10 10 H 1.08998 * 109.54219 * 335.50489 * 9 7 2 11 11 C 1.53256 * 109.61708 * 95.72202 * 9 7 2 12 12 C 1.53095 * 109.11443 * 176.28919 * 11 9 7 13 13 O 1.42895 * 109.50375 * 302.04848 * 12 11 9 14 14 C 1.42985 * 114.06261 * 61.47112 * 13 12 11 15 15 C 1.52716 * 109.42912 * 299.52735 * 14 13 12 16 16 C 1.53944 * 109.87369 * 177.71311 * 15 14 13 17 17 C 1.54968 * 104.11946 * 142.78974 * 16 15 14 18 18 C 1.54913 * 102.79143 * 322.33980 * 17 16 15 19 19 C 1.53567 * 110.04214 * 295.19438 * 15 14 13 20 20 H 0.96997 * 119.99546 * 0.02562 * 1 2 3 21 21 H 1.09002 * 109.52660 * 296.18265 * 11 9 7 22 22 H 1.09000 * 109.52720 * 56.39691 * 11 9 7 23 23 H 1.08994 * 109.46336 * 62.05638 * 12 11 9 24 24 H 1.08997 * 109.46769 * 182.03917 * 12 11 9 25 25 H 1.08995 * 109.47943 * 179.54088 * 14 13 12 26 26 H 1.08992 * 109.48059 * 59.51345 * 14 13 12 27 27 H 1.08990 * 110.50053 * 24.12729 * 16 15 14 28 28 H 1.08997 * 110.49610 * 261.44811 * 16 15 14 29 29 H 1.09003 * 110.74247 * 204.01321 * 17 16 15 30 30 H 1.08994 * 110.74895 * 80.66754 * 17 16 15 31 31 H 1.08998 * 110.48465 * 156.44796 * 18 17 16 32 32 H 1.09007 * 110.48439 * 279.08600 * 18 17 16 33 33 H 1.08999 * 110.05797 * 121.55921 * 19 15 14 34 34 H 1.09004 * 110.05573 * 0.06806 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4438 2.0768 -1.3988 5 1 1.4742 2.6368 0.7521 6 1 3.5723 1.4254 0.6465 7 6 2.0045 -1.1941 0.0005 8 1 1.4686 -2.1271 -0.0941 9 6 3.5056 -1.1975 0.1330 10 1 3.9042 -0.2434 -0.2117 11 6 3.8922 -1.4147 1.6000 12 6 5.4165 -1.5088 1.7081 13 8 5.8882 -2.5762 0.8835 14 6 5.6023 -2.4085 -0.5074 15 6 4.0906 -2.3301 -0.7095 16 6 3.7731 -2.0921 -2.1969 17 6 2.4964 -2.9332 -2.4502 18 6 2.7435 -4.1988 -1.5917 19 6 3.4378 -3.6647 -0.3209 20 1 -0.4849 0.8401 -0.0004 21 1 3.5355 -0.5766 2.1987 22 1 3.4434 -2.3396 1.9620 23 1 5.8626 -0.5706 1.3783 24 1 5.6961 -1.6995 2.7442 25 1 6.0001 -3.2563 -1.0651 26 1 6.0650 -1.4888 -0.8653 27 1 4.5927 -2.4442 -2.8233 28 1 3.5772 -1.0359 -2.3811 29 1 2.4084 -3.1932 -3.5051 30 1 1.6092 -2.4011 -2.1073 31 1 1.7980 -4.6776 -1.3371 32 1 3.3955 -4.8957 -2.1184 33 1 2.7026 -3.5055 0.4679 34 1 4.1989 -4.3697 0.0136 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259776646.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:02 Heat of formation + Delta-G solvation = -67.859841 kcal Electronic energy + Delta-G solvation = -15237.617519 eV Core-core repulsion = 12941.380697 eV Total energy + Delta-G solvation = -2296.236822 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.136 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.62635 -36.26436 -33.22731 -31.39702 -29.82990 -27.91424 -26.51168 -23.93768 -22.28927 -20.86677 -19.86663 -17.63541 -16.86533 -15.47957 -15.33570 -14.77436 -14.40553 -13.95801 -13.35338 -12.91367 -12.67528 -12.43276 -12.02722 -11.30841 -11.04585 -10.87578 -10.62225 -10.60011 -10.28847 -10.24939 -10.12363 -9.95411 -9.65480 -9.44260 -9.27721 -8.91962 -8.49744 -8.35302 -6.05359 -4.01242 3.26145 3.36226 3.37179 4.42670 4.46797 5.21368 5.41039 5.47378 5.50449 5.73169 5.88167 5.93388 6.04286 6.05628 6.10943 6.23022 6.34321 6.39625 6.44752 6.50503 6.63163 6.75376 6.81137 6.83981 7.00318 7.06366 7.11896 7.35175 7.40396 7.49871 7.79214 7.81429 8.57617 9.02019 9.58782 11.07366 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.027059 B = 0.016667 C = 0.012492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.533453 B = 1679.515599 C = 2240.881102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.070 3.930 3 Si 0.867 3.133 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.264 1.264 7 C -0.495 4.495 8 H 0.083 0.917 9 C 0.023 3.977 10 H 0.031 0.969 11 C -0.147 4.147 12 C 0.057 3.943 13 O -0.389 6.389 14 C 0.071 3.929 15 C -0.082 4.082 16 C -0.098 4.098 17 C -0.118 4.118 18 C -0.119 4.119 19 C -0.099 4.099 20 H 0.261 0.739 21 H 0.057 0.943 22 H 0.064 0.936 23 H 0.036 0.964 24 H 0.078 0.922 25 H 0.080 0.920 26 H 0.038 0.962 27 H 0.043 0.957 28 H 0.062 0.938 29 H 0.042 0.958 30 H 0.094 0.906 31 H 0.054 0.946 32 H 0.046 0.954 33 H 0.077 0.923 34 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.398 -3.573 -1.504 9.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.131 4.131 3 Si 0.695 3.305 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.189 1.189 7 C -0.533 4.533 8 H 0.101 0.899 9 C 0.004 3.996 10 H 0.049 0.951 11 C -0.185 4.185 12 C -0.019 4.019 13 O -0.308 6.308 14 C -0.005 4.005 15 C -0.082 4.082 16 C -0.135 4.135 17 C -0.156 4.156 18 C -0.157 4.157 19 C -0.136 4.136 20 H 0.071 0.929 21 H 0.076 0.924 22 H 0.083 0.917 23 H 0.055 0.945 24 H 0.096 0.904 25 H 0.098 0.902 26 H 0.056 0.944 27 H 0.062 0.938 28 H 0.081 0.919 29 H 0.061 0.939 30 H 0.112 0.888 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.095 0.905 34 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 8.328 -3.607 -1.424 9.187 hybrid contribution 0.220 1.319 -0.091 1.340 sum 8.549 -2.289 -1.515 8.978 Atomic orbital electron populations 1.69905 1.06165 1.26655 1.51294 1.25034 0.94577 0.98593 0.94886 0.87003 0.80541 0.84543 0.78402 1.20516 1.21710 1.18914 1.21023 0.88865 0.94574 1.48823 0.89868 1.19263 0.97212 0.93030 0.90057 0.95125 1.22495 0.93035 1.01831 1.01142 1.22658 0.96039 0.89354 0.93889 1.87813 1.79240 1.45851 1.17927 1.22679 0.95786 0.99999 0.82065 1.21551 0.93121 0.97466 0.96072 1.22108 0.96544 1.00264 0.94599 1.22548 1.00040 0.95864 0.97124 1.22300 0.99234 0.97251 0.96894 1.22061 0.98937 0.94817 0.97820 0.92862 0.92386 0.91696 0.94532 0.90428 0.90183 0.94412 0.93828 0.91880 0.93893 0.88792 0.92721 0.93487 0.90464 0.93438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.59 13.96 55.43 0.77 -25.82 16 2 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 3 Si 0.87 21.00 27.27 -169.99 -4.64 16.36 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.26 -6.13 6.42 56.52 0.36 -5.77 16 7 C -0.50 -12.82 6.28 -34.44 -0.22 -13.03 16 8 H 0.08 2.33 5.69 -52.49 -0.30 2.03 16 9 C 0.02 0.52 0.98 -91.74 -0.09 0.43 16 10 H 0.03 0.71 5.02 -51.93 -0.26 0.45 16 11 C -0.15 -3.05 5.17 -26.55 -0.14 -3.18 16 12 C 0.06 1.03 6.83 37.21 0.25 1.29 16 13 O -0.39 -7.28 10.44 -35.23 -0.37 -7.65 16 14 C 0.07 1.26 5.16 37.01 0.19 1.45 16 15 C -0.08 -1.59 0.52 -153.97 -0.08 -1.67 16 16 C -0.10 -1.83 5.57 -25.20 -0.14 -1.97 16 17 C -0.12 -2.23 6.31 -24.68 -0.16 -2.39 16 18 C -0.12 -2.10 6.78 -25.02 -0.17 -2.27 16 19 C -0.10 -1.89 4.78 -25.73 -0.12 -2.01 16 20 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 21 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 22 H 0.06 1.37 6.89 -51.93 -0.36 1.01 16 23 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 25 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 26 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.04 0.71 7.84 -51.93 -0.41 0.30 16 28 H 0.06 1.27 7.80 -51.93 -0.41 0.87 16 29 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.09 2.10 6.27 -51.93 -0.33 1.77 16 31 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.08 1.65 5.38 -51.93 -0.28 1.37 16 34 H 0.05 0.86 7.55 -51.93 -0.39 0.47 16 LS Contribution 252.05 15.07 3.80 3.80 Total: -1.00 -27.87 252.05 -6.48 -34.35 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -5.28 Total: 0.50 kcal Atomic # 6 Polarization: -20.77 SS G_CDS: -0.76 Total: -21.54 kcal Atomic # 7 Polarization: -26.59 SS G_CDS: 0.77 Total: -25.82 kcal Atomic # 8 Polarization: -7.28 SS G_CDS: -0.37 Total: -7.65 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -4.64 Total: 16.36 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -27.87 -6.48 -34.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259776646.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.508 kcal (2) G-P(sol) polarization free energy of solvation -27.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds