Wall clock time and date at job start Mon Mar 30 2020 02:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86793 * 120.00317 * 2 1 4 4 H 1.48505 * 109.46909 * 272.50041 * 3 2 1 5 5 H 1.48496 * 109.47239 * 32.49587 * 3 2 1 6 6 H 1.48502 * 109.47498 * 152.50101 * 3 2 1 7 7 C 1.37878 * 119.99476 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00468 * 5.83003 * 7 2 1 9 9 C 1.50701 * 119.99815 * 185.82434 * 7 2 1 10 10 H 1.08998 * 109.54219 * 335.50489 * 9 7 2 11 11 C 1.53256 * 109.61708 * 95.72202 * 9 7 2 12 12 C 1.53095 * 109.11443 * 176.28919 * 11 9 7 13 13 O 1.42895 * 109.50375 * 302.04848 * 12 11 9 14 14 C 1.42985 * 114.06261 * 61.47112 * 13 12 11 15 15 C 1.52716 * 109.42912 * 299.52735 * 14 13 12 16 16 C 1.53944 * 109.87369 * 177.71311 * 15 14 13 17 17 C 1.54968 * 104.11946 * 142.78974 * 16 15 14 18 18 C 1.54913 * 102.79143 * 322.33980 * 17 16 15 19 19 C 1.53567 * 110.04214 * 295.19438 * 15 14 13 20 20 H 0.96997 * 119.99546 * 0.02562 * 1 2 3 21 21 H 1.09002 * 109.52660 * 296.18265 * 11 9 7 22 22 H 1.09000 * 109.52720 * 56.39691 * 11 9 7 23 23 H 1.08994 * 109.46336 * 62.05638 * 12 11 9 24 24 H 1.08997 * 109.46769 * 182.03917 * 12 11 9 25 25 H 1.08995 * 109.47943 * 179.54088 * 14 13 12 26 26 H 1.08992 * 109.48059 * 59.51345 * 14 13 12 27 27 H 1.08990 * 110.50053 * 24.12729 * 16 15 14 28 28 H 1.08997 * 110.49610 * 261.44811 * 16 15 14 29 29 H 1.09003 * 110.74247 * 204.01321 * 17 16 15 30 30 H 1.08994 * 110.74895 * 80.66754 * 17 16 15 31 31 H 1.08998 * 110.48465 * 156.44796 * 18 17 16 32 32 H 1.09007 * 110.48439 * 279.08600 * 18 17 16 33 33 H 1.08999 * 110.05797 * 121.55921 * 19 15 14 34 34 H 1.09004 * 110.05573 * 0.06806 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4438 2.0768 -1.3988 5 1 1.4742 2.6368 0.7521 6 1 3.5723 1.4254 0.6465 7 6 2.0045 -1.1941 0.0005 8 1 1.4686 -2.1271 -0.0941 9 6 3.5056 -1.1975 0.1330 10 1 3.9042 -0.2434 -0.2117 11 6 3.8922 -1.4147 1.6000 12 6 5.4165 -1.5088 1.7081 13 8 5.8882 -2.5762 0.8835 14 6 5.6023 -2.4085 -0.5074 15 6 4.0906 -2.3301 -0.7095 16 6 3.7731 -2.0921 -2.1969 17 6 2.4964 -2.9332 -2.4502 18 6 2.7435 -4.1988 -1.5917 19 6 3.4378 -3.6647 -0.3209 20 1 -0.4849 0.8401 -0.0004 21 1 3.5355 -0.5766 2.1987 22 1 3.4434 -2.3396 1.9620 23 1 5.8626 -0.5706 1.3783 24 1 5.6961 -1.6995 2.7442 25 1 6.0001 -3.2563 -1.0651 26 1 6.0650 -1.4888 -0.8653 27 1 4.5927 -2.4442 -2.8233 28 1 3.5772 -1.0359 -2.3811 29 1 2.4084 -3.1932 -3.5051 30 1 1.6092 -2.4011 -2.1073 31 1 1.7980 -4.6776 -1.3371 32 1 3.3955 -4.8957 -2.1184 33 1 2.7026 -3.5055 0.4679 34 1 4.1989 -4.3697 0.0136 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259776646.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:02 Heat of formation + Delta-G solvation = -84.599124 kcal Electronic energy + Delta-G solvation = -15238.343389 eV Core-core repulsion = 12941.380697 eV Total energy + Delta-G solvation = -2296.962692 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.136 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.16956 -37.73510 -35.10522 -33.27463 -31.29754 -29.42710 -28.36001 -25.39855 -24.05090 -22.48154 -21.38963 -19.29477 -18.79950 -17.04903 -16.81893 -16.33487 -15.90716 -15.82742 -15.00897 -14.57095 -14.39567 -14.06759 -13.58141 -12.97553 -12.84241 -12.56452 -12.36449 -12.19942 -11.82491 -11.77287 -11.75403 -11.60497 -11.34491 -11.04774 -10.95484 -10.64412 -10.51233 -9.99275 -8.18480 -6.15774 1.32054 1.35728 1.43826 2.39192 3.08522 3.16325 3.88956 3.97796 3.99429 4.29269 4.36528 4.46482 4.57897 4.60396 4.69319 4.77123 4.82803 4.89440 4.92659 4.99456 5.11232 5.17418 5.22094 5.31244 5.41222 5.48202 5.50793 5.70900 5.76920 5.83148 5.86990 6.38354 6.49047 6.90165 7.46183 8.97780 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.027059 B = 0.016667 C = 0.012492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.533453 B = 1679.515599 C = 2240.881102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.010 3.990 3 Si 0.923 3.077 4 H -0.275 1.275 5 H -0.296 1.296 6 H -0.244 1.244 7 C -0.475 4.475 8 H 0.050 0.950 9 C 0.018 3.982 10 H 0.026 0.974 11 C -0.146 4.146 12 C 0.063 3.937 13 O -0.394 6.394 14 C 0.072 3.928 15 C -0.085 4.085 16 C -0.097 4.097 17 C -0.119 4.119 18 C -0.113 4.113 19 C -0.095 4.095 20 H 0.259 0.741 21 H 0.048 0.952 22 H 0.053 0.947 23 H 0.047 0.953 24 H 0.104 0.896 25 H 0.108 0.892 26 H 0.049 0.951 27 H 0.080 0.920 28 H 0.042 0.958 29 H 0.067 0.933 30 H 0.045 0.955 31 H 0.046 0.954 32 H 0.080 0.920 33 H 0.042 0.958 34 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.399 -4.043 -2.045 12.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.185 4.185 3 Si 0.749 3.251 4 H -0.201 1.201 5 H -0.222 1.222 6 H -0.168 1.168 7 C -0.513 4.513 8 H 0.068 0.932 9 C -0.001 4.001 10 H 0.044 0.956 11 C -0.185 4.185 12 C -0.014 4.014 13 O -0.313 6.313 14 C -0.004 4.004 15 C -0.085 4.085 16 C -0.134 4.134 17 C -0.157 4.157 18 C -0.151 4.151 19 C -0.133 4.133 20 H 0.068 0.932 21 H 0.066 0.934 22 H 0.071 0.929 23 H 0.065 0.935 24 H 0.122 0.878 25 H 0.126 0.874 26 H 0.067 0.933 27 H 0.099 0.901 28 H 0.061 0.939 29 H 0.086 0.914 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.099 0.901 33 H 0.060 0.940 34 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 11.359 -4.088 -1.962 12.231 hybrid contribution -0.763 1.369 0.075 1.569 sum 10.597 -2.719 -1.888 11.102 Atomic orbital electron populations 1.70056 1.07969 1.27212 1.54307 1.25769 0.95158 1.02106 0.95516 0.86095 0.80046 0.80440 0.78557 1.20086 1.22245 1.16784 1.21216 0.91005 0.92981 1.46099 0.93206 1.19284 0.94585 0.94237 0.91976 0.95633 1.22394 0.95767 1.00853 0.99464 1.22653 0.93284 0.89936 0.95508 1.87821 1.78927 1.46075 1.18438 1.22772 0.93765 1.01899 0.81979 1.21543 0.94907 0.96117 0.95951 1.22129 0.97445 0.99093 0.94735 1.22451 0.98345 0.96190 0.98678 1.22287 0.99518 0.97107 0.96184 1.21983 0.98507 0.95276 0.97529 0.93198 0.93353 0.92861 0.93517 0.87828 0.87391 0.93295 0.90134 0.93925 0.91438 0.93577 0.93469 0.90125 0.93954 0.91858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.78 13.96 21.45 0.30 -58.48 16 2 C 0.01 0.56 5.47 84.65 0.46 1.03 16 3 Si 0.92 43.69 27.27 68.60 1.87 45.56 16 4 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 5 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 6 H -0.24 -10.64 6.42 99.48 0.64 -10.00 16 7 C -0.47 -25.31 6.28 25.60 0.16 -25.15 16 8 H 0.05 2.95 5.69 -2.91 -0.02 2.93 16 9 C 0.02 0.79 0.98 -11.52 -0.01 0.78 16 10 H 0.03 1.15 5.02 -2.39 -0.01 1.14 16 11 C -0.15 -5.91 5.17 30.71 0.16 -5.75 16 12 C 0.06 2.06 6.83 72.01 0.49 2.55 16 13 O -0.39 -13.17 10.44 -148.98 -1.56 -14.73 16 14 C 0.07 2.25 5.16 71.89 0.37 2.62 16 15 C -0.08 -3.13 0.52 -51.83 -0.03 -3.15 16 16 C -0.10 -3.40 5.57 31.59 0.18 -3.22 16 17 C -0.12 -4.39 6.31 31.92 0.20 -4.19 16 18 C -0.11 -3.81 6.78 31.70 0.22 -3.59 16 19 C -0.10 -3.52 4.78 31.24 0.15 -3.37 16 20 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 21 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 22 H 0.05 2.24 6.89 -2.39 -0.02 2.23 16 23 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 24 H 0.10 2.88 8.14 -2.39 -0.02 2.86 16 25 H 0.11 2.81 8.14 -2.39 -0.02 2.79 16 26 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.08 2.26 7.84 -2.39 -0.02 2.24 16 28 H 0.04 1.66 7.80 -2.39 -0.02 1.64 16 29 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.05 2.13 6.27 -2.39 -0.01 2.12 16 31 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.08 2.20 8.14 -2.38 -0.02 2.18 16 33 H 0.04 1.84 5.38 -2.39 -0.01 1.82 16 34 H 0.06 2.11 7.55 -2.38 -0.02 2.10 16 Total: -1.00 -61.51 252.05 3.96 -57.55 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: 1.00 Total: 11.55 kcal Atomic # 6 Polarization: -43.80 SS G_CDS: 2.35 Total: -41.45 kcal Atomic # 7 Polarization: -58.78 SS G_CDS: 0.30 Total: -58.48 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: -1.56 Total: -14.73 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 1.87 Total: 45.56 kcal Total: -61.51 3.96 -57.55 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259776646.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.053 kcal (2) G-P(sol) polarization free energy of solvation -61.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds