Wall clock time and date at job start Mon Mar 30 2020 02:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 119.99957 * 2 1 4 4 H 1.48496 * 109.47564 * 240.00266 * 3 2 1 5 5 H 1.48500 * 109.47087 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46975 * 120.00250 * 3 2 1 7 7 C 1.37876 * 119.99719 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99617 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00463 * 359.97438 * 7 2 1 10 10 H 1.09006 * 109.61968 * 4.56582 * 9 7 2 11 11 C 1.53257 * 109.54544 * 244.34563 * 9 7 2 12 12 C 1.53103 * 109.11003 * 183.75587 * 11 9 7 13 13 O 1.42894 * 109.51277 * 57.94389 * 12 11 9 14 14 C 1.42980 * 114.05637 * 298.53618 * 13 12 11 15 15 C 1.52714 * 109.42738 * 60.47900 * 14 13 12 16 16 C 1.53940 * 109.87897 * 182.26048 * 15 14 13 17 17 C 1.54968 * 104.12227 * 217.22448 * 16 15 14 18 18 C 1.54920 * 102.79279 * 37.65139 * 17 16 15 19 19 C 1.53570 * 110.03688 * 64.77430 * 15 14 13 20 20 H 0.96996 * 119.99908 * 359.97438 * 1 2 3 21 21 H 1.08997 * 109.53441 * 63.86495 * 11 9 7 22 22 H 1.09005 * 109.52796 * 303.64543 * 11 9 7 23 23 H 1.09002 * 109.46140 * 177.94877 * 12 11 9 24 24 H 1.08999 * 109.46232 * 297.92527 * 12 11 9 25 25 H 1.09004 * 109.47715 * 180.46343 * 14 13 12 26 26 H 1.08996 * 109.48084 * 300.47750 * 14 13 12 27 27 H 1.09000 * 110.49594 * 335.88016 * 16 15 14 28 28 H 1.08989 * 110.49924 * 98.55978 * 16 15 14 29 29 H 1.08998 * 110.74586 * 279.32478 * 17 16 15 30 30 H 1.08999 * 110.90136 * 156.05536 * 17 16 15 31 31 H 1.09001 * 110.47942 * 203.55175 * 18 17 16 32 32 H 1.08996 * 110.59719 * 80.97273 * 18 17 16 33 33 H 1.08993 * 110.05989 * 238.43309 * 19 15 14 34 34 H 1.08997 * 110.05529 * 359.87657 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.1816 -2.3044 -0.0818 11 6 1.5367 -3.2561 1.3011 12 6 0.8427 -4.6199 1.2505 13 8 1.3068 -5.3496 0.1129 14 6 1.0254 -4.7185 -1.1389 15 6 1.7065 -3.3524 -1.1834 16 6 1.3639 -2.6395 -2.5041 17 6 2.6725 -1.9027 -2.8866 18 6 3.7702 -2.9094 -2.4602 19 6 3.2323 -3.5239 -1.1504 20 1 -0.4850 0.8400 0.0004 21 1 1.1549 -2.6841 2.1467 22 1 2.6118 -3.3981 1.4115 23 1 1.0721 -5.1780 2.1582 24 1 -0.2351 -4.4763 1.1751 25 1 1.4023 -5.3393 -1.9517 26 1 -0.0517 -4.5915 -1.2479 27 1 1.0965 -3.3658 -3.2717 28 1 0.5540 -1.9259 -2.3537 29 1 2.7670 -0.9699 -2.3307 30 1 2.7147 -1.7169 -3.9598 31 1 4.7127 -2.3923 -2.2801 32 1 3.8985 -3.6811 -3.2192 33 1 3.6491 -2.9977 -0.2918 34 1 3.4885 -4.5822 -1.1003 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259776649.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:04 Heat of formation + Delta-G solvation = -71.158035 kcal Electronic energy + Delta-G solvation = -15225.880131 eV Core-core repulsion = 12929.500289 eV Total energy + Delta-G solvation = -2296.379842 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.40773 -36.11813 -33.18444 -31.10177 -29.67195 -27.77629 -26.13665 -23.78017 -22.54707 -20.74932 -19.69889 -17.60942 -16.28944 -15.30356 -15.17866 -14.63987 -14.26803 -14.23711 -13.09473 -12.84655 -12.50206 -12.17834 -11.82743 -11.10901 -10.91568 -10.77441 -10.60438 -10.47359 -10.23009 -10.09219 -10.06355 -9.99543 -9.55654 -9.30162 -9.23073 -8.67919 -8.40243 -8.24380 -6.00038 -3.99069 3.30217 3.35912 3.38532 4.43200 4.62376 5.26927 5.56156 5.61981 5.64945 5.88520 6.01941 6.09986 6.18861 6.22637 6.27265 6.39010 6.48509 6.50762 6.55380 6.72420 6.77731 6.85893 6.97997 7.01435 7.14033 7.26990 7.39195 7.41453 7.72675 7.83939 7.96000 7.98575 8.48438 9.09155 9.61329 11.09171 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.030694 B = 0.014577 C = 0.011699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.014168 B = 1920.370629 C = 2392.832386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.066 3.934 3 Si 0.881 3.119 4 H -0.276 1.276 5 H -0.289 1.289 6 H -0.278 1.278 7 C -0.492 4.492 8 H 0.055 0.945 9 C 0.043 3.957 10 H 0.066 0.934 11 C -0.143 4.143 12 C 0.059 3.941 13 O -0.393 6.393 14 C 0.072 3.928 15 C -0.084 4.084 16 C -0.095 4.095 17 C -0.115 4.115 18 C -0.119 4.119 19 C -0.098 4.098 20 H 0.260 0.740 21 H 0.058 0.942 22 H 0.051 0.949 23 H 0.073 0.927 24 H 0.039 0.961 25 H 0.075 0.925 26 H 0.039 0.961 27 H 0.037 0.963 28 H 0.073 0.927 29 H 0.085 0.915 30 H 0.039 0.961 31 H 0.049 0.951 32 H 0.046 0.954 33 H 0.070 0.930 34 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.538 -5.521 -2.425 6.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.135 4.135 3 Si 0.709 3.291 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.204 1.204 7 C -0.530 4.530 8 H 0.073 0.927 9 C 0.025 3.975 10 H 0.085 0.915 11 C -0.181 4.181 12 C -0.017 4.017 13 O -0.313 6.313 14 C -0.004 4.004 15 C -0.085 4.085 16 C -0.132 4.132 17 C -0.152 4.152 18 C -0.157 4.157 19 C -0.136 4.136 20 H 0.070 0.930 21 H 0.076 0.924 22 H 0.070 0.930 23 H 0.091 0.909 24 H 0.057 0.943 25 H 0.093 0.907 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.091 0.909 29 H 0.103 0.897 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.089 0.911 34 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 2.470 -5.565 -2.405 6.546 hybrid contribution 0.324 1.269 0.010 1.310 sum 2.794 -4.296 -2.395 5.656 Atomic orbital electron populations 1.69876 1.05833 1.26485 1.51403 1.24926 0.94739 0.98818 0.95051 0.86836 0.79758 0.83800 0.78676 1.20178 1.21474 1.20376 1.20967 0.92709 0.89982 1.49324 0.92719 1.18968 0.99346 0.91915 0.87303 0.91536 1.22393 0.99563 0.94220 1.01949 1.22632 0.97299 0.94060 0.87741 1.87784 1.81469 1.47505 1.14505 1.22667 0.98190 0.94357 0.85215 1.21692 0.94742 0.93750 0.98311 1.22066 0.98350 0.97987 0.94831 1.22475 0.94656 0.99895 0.98193 1.22301 0.98076 0.97869 0.97427 1.22043 0.95522 0.98509 0.97508 0.93007 0.92373 0.92981 0.90891 0.94259 0.90711 0.94299 0.94470 0.90853 0.89667 0.94180 0.93179 0.93544 0.91106 0.93731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.05 12.61 55.43 0.70 -24.35 16 2 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.88 20.81 29.54 -169.99 -5.02 15.79 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.49 -12.56 5.16 -34.44 -0.18 -12.73 16 8 H 0.05 1.41 6.52 -52.48 -0.34 1.07 16 9 C 0.04 1.02 1.64 -91.74 -0.15 0.87 16 10 H 0.07 1.78 6.91 -51.93 -0.36 1.42 16 11 C -0.14 -3.08 5.17 -26.55 -0.14 -3.22 16 12 C 0.06 1.13 6.83 37.21 0.25 1.38 16 13 O -0.39 -7.79 10.44 -35.23 -0.37 -8.15 16 14 C 0.07 1.38 5.16 37.01 0.19 1.57 16 15 C -0.08 -1.74 0.52 -153.97 -0.08 -1.82 16 16 C -0.09 -1.92 5.57 -25.20 -0.14 -2.06 16 17 C -0.11 -2.24 6.43 -24.68 -0.16 -2.40 16 18 C -0.12 -2.15 6.84 -25.01 -0.17 -2.32 16 19 C -0.10 -1.94 4.93 -25.73 -0.13 -2.06 16 20 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 21 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 22 H 0.05 1.12 6.89 -51.93 -0.36 0.76 16 23 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 24 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 26 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.04 0.67 7.84 -51.93 -0.41 0.26 16 28 H 0.07 1.69 7.80 -51.94 -0.41 1.28 16 29 H 0.08 1.89 6.65 -51.93 -0.35 1.55 16 30 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.07 1.51 5.22 -51.93 -0.27 1.24 16 34 H 0.04 0.84 7.55 -51.93 -0.39 0.45 16 LS Contribution 256.45 15.07 3.86 3.86 Total: -1.00 -26.74 256.45 -7.02 -33.76 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: -5.40 Total: 0.25 kcal Atomic # 6 Polarization: -20.36 SS G_CDS: -0.79 Total: -21.15 kcal Atomic # 7 Polarization: -25.05 SS G_CDS: 0.70 Total: -24.35 kcal Atomic # 8 Polarization: -7.79 SS G_CDS: -0.37 Total: -8.15 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -26.74 -7.02 -33.76 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259776649.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.398 kcal (2) G-P(sol) polarization free energy of solvation -26.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds