Wall clock time and date at job start Mon Mar 30 2020 02:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 119.99957 * 2 1 4 4 H 1.48496 * 109.47564 * 240.00266 * 3 2 1 5 5 H 1.48500 * 109.47087 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46975 * 120.00250 * 3 2 1 7 7 C 1.37876 * 119.99719 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99617 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00463 * 359.97438 * 7 2 1 10 10 H 1.09006 * 109.61968 * 4.56582 * 9 7 2 11 11 C 1.53257 * 109.54544 * 244.34563 * 9 7 2 12 12 C 1.53103 * 109.11003 * 183.75587 * 11 9 7 13 13 O 1.42894 * 109.51277 * 57.94389 * 12 11 9 14 14 C 1.42980 * 114.05637 * 298.53618 * 13 12 11 15 15 C 1.52714 * 109.42738 * 60.47900 * 14 13 12 16 16 C 1.53940 * 109.87897 * 182.26048 * 15 14 13 17 17 C 1.54968 * 104.12227 * 217.22448 * 16 15 14 18 18 C 1.54920 * 102.79279 * 37.65139 * 17 16 15 19 19 C 1.53570 * 110.03688 * 64.77430 * 15 14 13 20 20 H 0.96996 * 119.99908 * 359.97438 * 1 2 3 21 21 H 1.08997 * 109.53441 * 63.86495 * 11 9 7 22 22 H 1.09005 * 109.52796 * 303.64543 * 11 9 7 23 23 H 1.09002 * 109.46140 * 177.94877 * 12 11 9 24 24 H 1.08999 * 109.46232 * 297.92527 * 12 11 9 25 25 H 1.09004 * 109.47715 * 180.46343 * 14 13 12 26 26 H 1.08996 * 109.48084 * 300.47750 * 14 13 12 27 27 H 1.09000 * 110.49594 * 335.88016 * 16 15 14 28 28 H 1.08989 * 110.49924 * 98.55978 * 16 15 14 29 29 H 1.08998 * 110.74586 * 279.32478 * 17 16 15 30 30 H 1.08999 * 110.90136 * 156.05536 * 17 16 15 31 31 H 1.09001 * 110.47942 * 203.55175 * 18 17 16 32 32 H 1.08996 * 110.59719 * 80.97273 * 18 17 16 33 33 H 1.08993 * 110.05989 * 238.43309 * 19 15 14 34 34 H 1.08997 * 110.05529 * 359.87657 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.1816 -2.3044 -0.0818 11 6 1.5367 -3.2561 1.3011 12 6 0.8427 -4.6199 1.2505 13 8 1.3068 -5.3496 0.1129 14 6 1.0254 -4.7185 -1.1389 15 6 1.7065 -3.3524 -1.1834 16 6 1.3639 -2.6395 -2.5041 17 6 2.6725 -1.9027 -2.8866 18 6 3.7702 -2.9094 -2.4602 19 6 3.2323 -3.5239 -1.1504 20 1 -0.4850 0.8400 0.0004 21 1 1.1549 -2.6841 2.1467 22 1 2.6118 -3.3981 1.4115 23 1 1.0721 -5.1780 2.1582 24 1 -0.2351 -4.4763 1.1751 25 1 1.4023 -5.3393 -1.9517 26 1 -0.0517 -4.5915 -1.2479 27 1 1.0965 -3.3658 -3.2717 28 1 0.5540 -1.9259 -2.3537 29 1 2.7670 -0.9699 -2.3307 30 1 2.7147 -1.7169 -3.9598 31 1 4.7127 -2.3923 -2.2801 32 1 3.8985 -3.6811 -3.2192 33 1 3.6491 -2.9977 -0.2918 34 1 3.4885 -4.5822 -1.1003 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259776649.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:04 Heat of formation + Delta-G solvation = -85.844215 kcal Electronic energy + Delta-G solvation = -15226.516971 eV Core-core repulsion = 12929.500289 eV Total energy + Delta-G solvation = -2297.016683 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.136 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.03977 -37.68276 -35.08260 -32.95223 -31.22667 -29.35215 -28.03945 -25.34123 -24.36317 -22.41675 -21.26180 -19.32688 -18.21495 -16.99138 -16.78500 -16.25636 -16.08604 -15.81545 -14.83215 -14.49786 -14.08111 -14.01063 -13.46106 -12.85794 -12.74459 -12.58367 -12.38054 -12.14537 -11.86590 -11.76543 -11.68807 -11.56538 -11.17703 -11.04279 -10.97843 -10.50147 -10.36474 -9.94689 -8.04653 -6.06992 1.39991 1.41442 1.47258 2.45602 3.10720 3.25085 3.99386 4.06510 4.07691 4.34161 4.45608 4.53562 4.65499 4.67523 4.75988 4.81872 4.89877 4.96551 5.00910 5.07605 5.20482 5.26432 5.35118 5.38440 5.49522 5.60947 5.65537 5.75510 5.82614 5.99125 6.04309 6.41307 6.50110 7.06354 7.54981 9.04202 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.030694 B = 0.014577 C = 0.011699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.014168 B = 1920.370629 C = 2392.832386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.018 3.982 3 Si 0.932 3.068 4 H -0.270 1.270 5 H -0.292 1.292 6 H -0.275 1.275 7 C -0.484 4.484 8 H 0.050 0.950 9 C 0.040 3.960 10 H 0.028 0.972 11 C -0.140 4.140 12 C 0.064 3.936 13 O -0.395 6.395 14 C 0.073 3.927 15 C -0.086 4.086 16 C -0.093 4.093 17 C -0.116 4.116 18 C -0.111 4.111 19 C -0.095 4.095 20 H 0.256 0.744 21 H 0.042 0.958 22 H 0.052 0.948 23 H 0.103 0.897 24 H 0.038 0.962 25 H 0.103 0.897 26 H 0.036 0.964 27 H 0.066 0.934 28 H 0.034 0.966 29 H 0.050 0.950 30 H 0.063 0.937 31 H 0.056 0.944 32 H 0.075 0.925 33 H 0.048 0.952 34 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.823 -6.905 -3.265 8.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.179 4.179 3 Si 0.759 3.241 4 H -0.195 1.195 5 H -0.218 1.218 6 H -0.201 1.201 7 C -0.523 4.523 8 H 0.068 0.932 9 C 0.021 3.979 10 H 0.046 0.954 11 C -0.178 4.178 12 C -0.012 4.012 13 O -0.314 6.314 14 C -0.004 4.004 15 C -0.086 4.086 16 C -0.130 4.130 17 C -0.153 4.153 18 C -0.149 4.149 19 C -0.132 4.132 20 H 0.065 0.935 21 H 0.061 0.939 22 H 0.071 0.929 23 H 0.121 0.879 24 H 0.056 0.944 25 H 0.121 0.879 26 H 0.054 0.946 27 H 0.084 0.916 28 H 0.053 0.947 29 H 0.069 0.931 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.094 0.906 33 H 0.066 0.934 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.772 -6.953 -3.243 8.549 hybrid contribution -0.079 1.677 0.281 1.702 sum 3.693 -5.276 -2.962 7.088 Atomic orbital electron populations 1.70011 1.07083 1.26697 1.53397 1.25522 0.95296 1.01584 0.95497 0.86018 0.78668 0.80628 0.78824 1.19467 1.21754 1.20058 1.21177 0.92471 0.91015 1.47604 0.93168 1.18902 0.96775 0.92299 0.89927 0.95371 1.22276 0.99759 0.95563 1.00177 1.22623 0.96852 0.92840 0.88903 1.87786 1.81463 1.47402 1.14717 1.22733 0.98045 0.93728 0.85856 1.21624 0.95817 0.94253 0.96931 1.22022 0.97539 0.97863 0.95625 1.22419 0.94931 0.98753 0.99211 1.22276 0.97484 0.98011 0.97102 1.21974 0.94350 0.99192 0.97690 0.93457 0.93905 0.92950 0.87895 0.94394 0.87854 0.94589 0.91576 0.94686 0.93097 0.91817 0.92514 0.90606 0.93363 0.92295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.80 12.61 21.45 0.27 -53.53 16 2 C 0.02 0.99 5.46 84.65 0.46 1.45 16 3 Si 0.93 43.35 29.54 68.60 2.03 45.38 16 4 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 5 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 6 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 7 C -0.48 -25.15 5.16 25.60 0.13 -25.02 16 8 H 0.05 2.62 6.52 -2.91 -0.02 2.60 16 9 C 0.04 1.90 1.64 -11.52 -0.02 1.88 16 10 H 0.03 1.55 6.91 -2.38 -0.02 1.54 16 11 C -0.14 -5.99 5.17 30.71 0.16 -5.83 16 12 C 0.06 2.34 6.83 72.02 0.49 2.83 16 13 O -0.39 -14.57 10.44 -148.98 -1.56 -16.12 16 14 C 0.07 2.60 5.16 71.89 0.37 2.97 16 15 C -0.09 -3.43 0.52 -51.83 -0.03 -3.46 16 16 C -0.09 -3.67 5.57 31.58 0.18 -3.49 16 17 C -0.12 -4.32 6.43 31.92 0.21 -4.12 16 18 C -0.11 -3.66 6.84 31.71 0.22 -3.45 16 19 C -0.09 -3.51 4.93 31.24 0.15 -3.35 16 20 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 21 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 22 H 0.05 2.22 6.89 -2.38 -0.02 2.20 16 23 H 0.10 3.14 8.14 -2.39 -0.02 3.13 16 24 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.10 3.13 8.14 -2.39 -0.02 3.11 16 26 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.07 2.20 7.84 -2.39 -0.02 2.18 16 28 H 0.03 1.63 7.80 -2.39 -0.02 1.61 16 29 H 0.05 2.24 6.65 -2.39 -0.02 2.23 16 30 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.06 1.79 8.14 -2.39 -0.02 1.78 16 32 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.05 1.99 5.22 -2.39 -0.01 1.98 16 34 H 0.06 2.01 7.55 -2.39 -0.02 1.99 16 Total: -1.00 -57.58 256.45 4.12 -53.45 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: 1.06 Total: 10.40 kcal Atomic # 6 Polarization: -41.90 SS G_CDS: 2.32 Total: -39.58 kcal Atomic # 7 Polarization: -53.80 SS G_CDS: 0.27 Total: -53.53 kcal Atomic # 8 Polarization: -14.57 SS G_CDS: -1.56 Total: -16.12 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Total: -57.58 4.12 -53.45 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259776649.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.390 kcal (2) G-P(sol) polarization free energy of solvation -57.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds