Wall clock time and date at job start Mon Mar 30 2020 02:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86793 * 120.00549 * 2 1 4 4 H 1.48492 * 109.47455 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47113 * 300.00052 * 3 2 1 6 6 H 1.48505 * 109.47044 * 59.99800 * 3 2 1 7 7 C 1.37885 * 119.99540 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99758 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99957 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.54775 * 59.80098 * 9 7 2 11 11 C 1.53184 * 109.54846 * 299.50482 * 9 7 2 12 12 C 1.53084 * 109.23788 * 182.85643 * 11 9 7 13 13 O 1.42978 * 109.39792 * 57.91254 * 12 11 9 14 14 C 1.42531 * 114.12886 * 299.52112 * 13 12 11 15 15 C 1.53612 * 110.02962 * 298.70490 * 14 13 12 16 16 C 1.54335 * 106.48897 * 240.65222 * 15 14 13 17 17 C 1.54915 * 104.31846 * 23.52503 * 16 15 14 18 18 C 1.53980 * 109.85657 * 181.29227 * 14 13 12 19 19 C 1.52774 * 110.34915 * 60.15690 * 14 13 12 20 20 H 0.97003 * 119.99687 * 0.02562 * 1 2 3 21 21 H 1.08995 * 109.50970 * 302.78762 * 11 9 7 22 22 H 1.08997 * 109.51145 * 62.88717 * 11 9 7 23 23 H 1.09004 * 109.48052 * 177.88549 * 12 11 9 24 24 H 1.09000 * 109.48679 * 297.93360 * 12 11 9 25 25 H 1.09001 * 110.05402 * 121.39745 * 15 14 13 26 26 H 1.08998 * 110.05256 * 359.90779 * 15 14 13 27 27 H 1.09002 * 110.48462 * 142.27150 * 16 15 14 28 28 H 1.08998 * 110.48586 * 264.77832 * 16 15 14 29 29 H 1.09004 * 110.74970 * 80.59382 * 17 16 15 30 30 H 1.09002 * 110.75117 * 203.94858 * 17 16 15 31 31 H 1.08999 * 110.49480 * 214.60343 * 18 14 13 32 32 H 1.08997 * 110.50243 * 337.28477 * 18 14 13 33 33 H 1.09001 * 109.52710 * 63.18995 * 19 14 13 34 34 H 1.08999 * 109.52096 * 183.37814 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2508 -2.4992 0.0005 10 1 0.6214 -2.5569 -0.8875 11 6 0.3784 -2.5873 1.2566 12 6 -0.3288 -3.9447 1.2854 13 8 0.6471 -4.9893 1.2559 14 6 1.4743 -4.9812 0.0952 15 6 0.6161 -5.1760 -1.1638 16 6 1.1153 -6.4714 -1.8381 17 6 1.7775 -7.2711 -0.6884 18 6 2.4630 -6.1604 0.1494 19 6 2.2449 -3.6654 0.0011 20 1 -0.4850 0.8401 -0.0004 21 1 1.0045 -2.4841 2.1427 22 1 -0.3642 -1.7896 1.2406 23 1 -0.9215 -4.0266 2.1965 24 1 -0.9820 -4.0329 0.4173 25 1 0.7451 -4.3298 -1.8387 26 1 -0.4335 -5.2785 -0.8885 27 1 0.2786 -7.0296 -2.2584 28 1 1.8464 -6.2409 -2.6130 29 1 1.0246 -7.7911 -0.0960 30 1 2.5142 -7.9725 -1.0802 31 1 3.4161 -5.8803 -0.2992 32 1 2.6068 -6.4911 1.1780 33 1 2.9141 -3.5731 0.8566 34 1 2.8263 -3.6490 -0.9207 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259798299.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:00 Heat of formation + Delta-G solvation = -73.216393 kcal Electronic energy + Delta-G solvation = -14795.302451 eV Core-core repulsion = 12498.833351 eV Total energy + Delta-G solvation = -2296.469099 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.54071 -35.60491 -33.88276 -31.19927 -29.73627 -28.30948 -26.30129 -24.06548 -22.36338 -20.79084 -19.97737 -17.74752 -16.43643 -15.91639 -15.03736 -14.61646 -14.37365 -13.95061 -13.34159 -12.77812 -12.64852 -12.33410 -12.10946 -11.07709 -11.03329 -10.88796 -10.82121 -10.74160 -10.66723 -10.42404 -10.19692 -10.12572 -10.05154 -9.52774 -9.11627 -8.90741 -8.38137 -8.18909 -5.98919 -4.04762 3.28958 3.37125 3.41287 4.43491 4.51333 4.98292 5.02606 5.26776 5.30819 5.75579 5.82772 5.84628 5.93748 6.04370 6.09781 6.16993 6.20831 6.33236 6.40392 6.43545 6.50931 6.56014 6.58987 6.65943 6.87792 7.07774 7.18167 7.44567 7.70617 7.97401 8.01863 8.22176 8.45417 8.98897 9.59778 11.06890 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.050244 B = 0.009008 C = 0.008539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.150821 B = 3107.686750 C = 3278.423623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.060 3.940 3 Si 0.890 3.110 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.511 4.511 8 H 0.055 0.945 9 C 0.048 3.952 10 H 0.028 0.972 11 C -0.142 4.142 12 C 0.057 3.943 13 O -0.385 6.385 14 C 0.117 3.883 15 C -0.148 4.148 16 C -0.122 4.122 17 C -0.123 4.123 18 C -0.111 4.111 19 C -0.127 4.127 20 H 0.259 0.741 21 H 0.042 0.958 22 H 0.096 0.904 23 H 0.072 0.928 24 H 0.040 0.960 25 H 0.075 0.925 26 H 0.067 0.933 27 H 0.058 0.942 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.054 0.946 34 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.212 -10.141 -1.113 10.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.141 4.141 3 Si 0.718 3.282 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.549 4.549 8 H 0.073 0.927 9 C 0.030 3.970 10 H 0.046 0.954 11 C -0.180 4.180 12 C -0.019 4.019 13 O -0.305 6.305 14 C 0.077 3.923 15 C -0.186 4.186 16 C -0.159 4.159 17 C -0.160 4.160 18 C -0.149 4.149 19 C -0.165 4.165 20 H 0.069 0.931 21 H 0.061 0.939 22 H 0.114 0.886 23 H 0.091 0.909 24 H 0.058 0.942 25 H 0.094 0.906 26 H 0.085 0.915 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.073 0.927 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.084 -10.142 -0.969 10.246 hybrid contribution 0.320 1.281 -0.157 1.330 sum 1.404 -8.862 -1.127 9.043 Atomic orbital electron populations 1.69887 1.05865 1.26243 1.51081 1.24978 0.94864 0.99049 0.95173 0.86569 0.80184 0.83917 0.77536 1.19828 1.21075 1.21058 1.21249 0.92921 0.90625 1.50087 0.92700 1.18720 0.92682 0.91672 0.93963 0.95419 1.22208 1.00997 0.95142 0.99690 1.22730 0.90488 0.88895 0.99824 1.87747 1.48751 1.51854 1.42148 1.21861 0.90117 0.95430 0.84861 1.22799 1.00083 0.97832 0.97862 1.22332 0.99723 0.96327 0.97561 1.22520 0.99321 0.97222 0.96940 1.22372 0.97578 0.94423 1.00520 1.22229 0.99079 0.94587 1.00622 0.93121 0.93938 0.88613 0.90940 0.94156 0.90596 0.91456 0.92271 0.91895 0.91631 0.92093 0.90751 0.91080 0.92712 0.92726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.42 11.39 55.43 0.63 -24.79 16 2 C 0.06 1.67 5.31 -17.82 -0.09 1.58 16 3 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 4 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 5 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.51 -14.14 8.56 -34.44 -0.29 -14.43 16 8 H 0.05 1.51 7.75 -52.49 -0.41 1.11 16 9 C 0.05 1.20 1.94 -91.55 -0.18 1.02 16 10 H 0.03 0.75 6.85 -51.93 -0.36 0.39 16 11 C -0.14 -3.43 5.15 -26.59 -0.14 -3.57 16 12 C 0.06 1.17 6.53 37.20 0.24 1.41 16 13 O -0.39 -7.89 10.17 -35.23 -0.36 -8.24 16 14 C 0.12 2.20 0.97 -89.91 -0.09 2.11 16 15 C -0.15 -2.58 5.19 -25.71 -0.13 -2.71 16 16 C -0.12 -1.71 6.83 -25.02 -0.17 -1.88 16 17 C -0.12 -1.65 6.93 -24.61 -0.17 -1.82 16 18 C -0.11 -1.75 6.09 -25.11 -0.15 -1.90 16 19 C -0.13 -2.74 3.80 -26.72 -0.10 -2.84 16 20 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 21 H 0.04 1.05 8.14 -51.93 -0.42 0.63 16 22 H 0.10 2.53 6.20 -51.93 -0.32 2.20 16 23 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 24 H 0.04 0.81 6.46 -51.93 -0.34 0.48 16 25 H 0.08 1.42 6.62 -51.93 -0.34 1.08 16 26 H 0.07 1.19 6.50 -51.93 -0.34 0.85 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.07 1.09 7.83 -51.93 -0.41 0.68 16 32 H 0.07 1.10 8.06 -51.93 -0.42 0.69 16 33 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 34 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 259.41 15.07 3.91 3.91 Total: -1.00 -28.44 259.41 -7.56 -36.00 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: -5.44 Total: -0.22 kcal Atomic # 6 Polarization: -21.75 SS G_CDS: -1.28 Total: -23.03 kcal Atomic # 7 Polarization: -25.42 SS G_CDS: 0.63 Total: -24.79 kcal Atomic # 8 Polarization: -7.89 SS G_CDS: -0.36 Total: -8.24 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -28.44 -7.56 -36.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259798299.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.214 kcal (2) G-P(sol) polarization free energy of solvation -28.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds