Wall clock time and date at job start Mon Mar 30 2020 02:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86793 * 120.00549 * 2 1 4 4 H 1.48492 * 109.47455 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47113 * 300.00052 * 3 2 1 6 6 H 1.48505 * 109.47044 * 59.99800 * 3 2 1 7 7 C 1.37885 * 119.99540 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99758 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99957 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.54775 * 59.80098 * 9 7 2 11 11 C 1.53184 * 109.54846 * 299.50482 * 9 7 2 12 12 C 1.53084 * 109.23788 * 182.85643 * 11 9 7 13 13 O 1.42978 * 109.39792 * 57.91254 * 12 11 9 14 14 C 1.42531 * 114.12886 * 299.52112 * 13 12 11 15 15 C 1.53612 * 110.02962 * 298.70490 * 14 13 12 16 16 C 1.54335 * 106.48897 * 240.65222 * 15 14 13 17 17 C 1.54915 * 104.31846 * 23.52503 * 16 15 14 18 18 C 1.53980 * 109.85657 * 181.29227 * 14 13 12 19 19 C 1.52774 * 110.34915 * 60.15690 * 14 13 12 20 20 H 0.97003 * 119.99687 * 0.02562 * 1 2 3 21 21 H 1.08995 * 109.50970 * 302.78762 * 11 9 7 22 22 H 1.08997 * 109.51145 * 62.88717 * 11 9 7 23 23 H 1.09004 * 109.48052 * 177.88549 * 12 11 9 24 24 H 1.09000 * 109.48679 * 297.93360 * 12 11 9 25 25 H 1.09001 * 110.05402 * 121.39745 * 15 14 13 26 26 H 1.08998 * 110.05256 * 359.90779 * 15 14 13 27 27 H 1.09002 * 110.48462 * 142.27150 * 16 15 14 28 28 H 1.08998 * 110.48586 * 264.77832 * 16 15 14 29 29 H 1.09004 * 110.74970 * 80.59382 * 17 16 15 30 30 H 1.09002 * 110.75117 * 203.94858 * 17 16 15 31 31 H 1.08999 * 110.49480 * 214.60343 * 18 14 13 32 32 H 1.08997 * 110.50243 * 337.28477 * 18 14 13 33 33 H 1.09001 * 109.52710 * 63.18995 * 19 14 13 34 34 H 1.08999 * 109.52096 * 183.37814 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2508 -2.4992 0.0005 10 1 0.6214 -2.5569 -0.8875 11 6 0.3784 -2.5873 1.2566 12 6 -0.3288 -3.9447 1.2854 13 8 0.6471 -4.9893 1.2559 14 6 1.4743 -4.9812 0.0952 15 6 0.6161 -5.1760 -1.1638 16 6 1.1153 -6.4714 -1.8381 17 6 1.7775 -7.2711 -0.6884 18 6 2.4630 -6.1604 0.1494 19 6 2.2449 -3.6654 0.0011 20 1 -0.4850 0.8401 -0.0004 21 1 1.0045 -2.4841 2.1427 22 1 -0.3642 -1.7896 1.2406 23 1 -0.9215 -4.0266 2.1965 24 1 -0.9820 -4.0329 0.4173 25 1 0.7451 -4.3298 -1.8387 26 1 -0.4335 -5.2785 -0.8885 27 1 0.2786 -7.0296 -2.2584 28 1 1.8464 -6.2409 -2.6130 29 1 1.0246 -7.7911 -0.0960 30 1 2.5142 -7.9725 -1.0802 31 1 3.4161 -5.8803 -0.2992 32 1 2.6068 -6.4911 1.1780 33 1 2.9141 -3.5731 0.8566 34 1 2.8263 -3.6490 -0.9207 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259798299.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:00 Heat of formation + Delta-G solvation = -89.184403 kcal Electronic energy + Delta-G solvation = -14795.994875 eV Core-core repulsion = 12498.833351 eV Total energy + Delta-G solvation = -2297.161524 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.136 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.09720 -37.05563 -35.80043 -33.19297 -31.31195 -29.59670 -28.16645 -25.75495 -24.18102 -22.27696 -21.39992 -19.40702 -18.47703 -17.36791 -16.78193 -16.36592 -16.00000 -15.47862 -14.88566 -14.56126 -14.08028 -13.97565 -13.87619 -12.91107 -12.82217 -12.61435 -12.31350 -12.17701 -12.05459 -12.01745 -11.91476 -11.72874 -11.43504 -11.36186 -10.92042 -10.79107 -10.41011 -10.01907 -8.11448 -6.25601 1.37273 1.39274 1.50588 2.40649 2.97858 3.14579 3.72169 3.77989 4.05024 4.30544 4.39992 4.46950 4.49396 4.56695 4.63334 4.75707 4.77767 4.91754 4.94268 4.98592 5.08356 5.12582 5.20352 5.23347 5.33720 5.37691 5.51329 5.54380 5.61102 5.95929 6.01438 6.34765 6.54505 6.85124 7.42222 8.92736 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.050244 B = 0.009008 C = 0.008539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.150821 B = 3107.686750 C = 3278.423623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.012 3.988 3 Si 0.954 3.046 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.049 0.951 9 C 0.045 3.955 10 H 0.002 0.998 11 C -0.136 4.136 12 C 0.065 3.935 13 O -0.388 6.388 14 C 0.109 3.891 15 C -0.149 4.149 16 C -0.116 4.116 17 C -0.113 4.113 18 C -0.110 4.110 19 C -0.120 4.120 20 H 0.261 0.739 21 H 0.027 0.973 22 H 0.069 0.931 23 H 0.096 0.904 24 H 0.043 0.957 25 H 0.053 0.947 26 H 0.061 0.939 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.090 0.910 31 H 0.084 0.916 32 H 0.072 0.928 33 H 0.044 0.956 34 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.859 -11.466 -1.394 11.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.186 4.186 3 Si 0.779 3.221 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.206 1.206 7 C -0.573 4.573 8 H 0.067 0.933 9 C 0.027 3.973 10 H 0.020 0.980 11 C -0.174 4.174 12 C -0.011 4.011 13 O -0.308 6.308 14 C 0.070 3.930 15 C -0.187 4.187 16 C -0.154 4.154 17 C -0.151 4.151 18 C -0.148 4.148 19 C -0.158 4.158 20 H 0.070 0.930 21 H 0.046 0.954 22 H 0.088 0.912 23 H 0.114 0.886 24 H 0.061 0.939 25 H 0.072 0.928 26 H 0.080 0.920 27 H 0.096 0.904 28 H 0.091 0.909 29 H 0.086 0.914 30 H 0.109 0.891 31 H 0.103 0.897 32 H 0.091 0.909 33 H 0.063 0.937 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.737 -11.479 -1.252 11.677 hybrid contribution 0.115 1.730 -0.078 1.736 sum 1.851 -9.748 -1.330 10.011 Atomic orbital electron populations 1.70009 1.07077 1.27097 1.51373 1.25746 0.95745 1.02350 0.94777 0.85572 0.79045 0.79762 0.77690 1.19324 1.20442 1.20562 1.21603 0.92930 0.92283 1.50523 0.93286 1.18673 0.93114 0.92358 0.93186 0.97972 1.22043 1.00151 0.96686 0.98523 1.22617 0.90368 0.86949 1.01167 1.87752 1.48764 1.51188 1.43120 1.22085 0.90636 0.95238 0.85073 1.22752 0.99671 0.99157 0.97074 1.22334 1.00672 0.94507 0.97849 1.22506 0.99779 0.96709 0.96074 1.22405 0.97230 0.93706 1.01414 1.22122 0.98351 0.95037 1.00270 0.92977 0.95366 0.91233 0.88621 0.93892 0.92807 0.91997 0.90426 0.90919 0.91399 0.89139 0.89738 0.90897 0.93730 0.92379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.31 11.39 21.45 0.24 -53.07 16 2 C 0.01 0.70 5.31 84.66 0.45 1.15 16 3 Si 0.95 44.26 29.54 68.60 2.03 46.29 16 4 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 5 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 6 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 7 C -0.54 -30.33 8.56 25.60 0.22 -30.11 16 8 H 0.05 2.75 7.75 -2.91 -0.02 2.73 16 9 C 0.05 2.32 1.94 -11.40 -0.02 2.30 16 10 H 0.00 0.12 6.85 -2.39 -0.02 0.11 16 11 C -0.14 -6.71 5.15 30.68 0.16 -6.55 16 12 C 0.07 2.67 6.53 72.01 0.47 3.14 16 13 O -0.39 -15.50 10.17 -148.98 -1.51 -17.01 16 14 C 0.11 3.99 0.97 -10.33 -0.01 3.98 16 15 C -0.15 -5.04 5.19 31.25 0.16 -4.88 16 16 C -0.12 -2.92 6.83 31.70 0.22 -2.71 16 17 C -0.11 -2.63 6.93 31.97 0.22 -2.41 16 18 C -0.11 -3.17 6.09 31.64 0.19 -2.98 16 19 C -0.12 -5.20 3.80 30.60 0.12 -5.08 16 20 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 21 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 22 H 0.07 3.80 6.20 -2.39 -0.01 3.78 16 23 H 0.10 3.45 8.14 -2.39 -0.02 3.43 16 24 H 0.04 1.73 6.46 -2.39 -0.02 1.72 16 25 H 0.05 2.03 6.62 -2.39 -0.02 2.02 16 26 H 0.06 2.14 6.50 -2.39 -0.02 2.12 16 27 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 30 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.08 2.26 7.83 -2.39 -0.02 2.24 16 32 H 0.07 2.08 8.06 -2.39 -0.02 2.06 16 33 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 Total: -1.00 -61.21 259.41 3.99 -57.23 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: 1.06 Total: 10.72 kcal Atomic # 6 Polarization: -46.33 SS G_CDS: 2.17 Total: -44.15 kcal Atomic # 7 Polarization: -53.31 SS G_CDS: 0.24 Total: -53.07 kcal Atomic # 8 Polarization: -15.50 SS G_CDS: -1.51 Total: -17.01 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -61.21 3.99 -57.23 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259798299.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.956 kcal (2) G-P(sol) polarization free energy of solvation -61.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds