Wall clock time and date at job start Mon Mar 30 2020 02:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46494 * 109.47205 * 2 1 4 4 C 1.35319 * 125.86622 * 125.00135 * 3 2 1 5 5 C 1.35349 * 106.17297 * 180.02562 * 4 3 2 6 6 C 1.50702 * 126.74978 * 179.97438 * 5 4 3 7 7 H 1.08999 * 109.47025 * 155.00006 * 6 5 4 8 8 C 1.50701 * 109.47080 * 35.00121 * 6 5 4 9 9 H 1.08002 * 119.99972 * 273.67665 * 8 6 5 10 10 C 1.37880 * 119.99844 * 93.68150 * 8 6 5 11 11 N 1.31512 * 119.99307 * 173.60467 * 10 8 6 12 12 Si 1.86791 * 120.00404 * 353.59796 * 10 8 6 13 13 H 1.48501 * 109.46972 * 93.12665 * 12 10 8 14 14 H 1.48498 * 109.47456 * 213.12485 * 12 10 8 15 15 H 1.48503 * 109.47321 * 333.12912 * 12 10 8 16 16 C 1.52993 * 109.47128 * 275.00039 * 6 5 4 17 17 N 1.46899 * 109.47459 * 185.57092 * 16 6 5 18 18 N 1.33770 * 106.50199 * 359.97438 * 5 4 3 19 19 N 1.28639 * 108.88418 * 0.02562 * 18 5 4 20 20 H 1.08996 * 109.47038 * 59.99435 * 1 2 3 21 21 H 1.08997 * 109.47126 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46771 * 299.99757 * 1 2 3 23 23 H 1.09001 * 109.46771 * 240.00243 * 2 1 3 24 24 H 1.08996 * 109.47038 * 120.00565 * 2 1 3 25 25 H 1.07994 * 126.91163 * 0.02834 * 4 3 2 26 26 H 0.97003 * 120.00170 * 179.97438 * 11 10 8 27 27 H 1.09007 * 109.47123 * 305.56512 * 16 6 5 28 28 H 1.08995 * 109.47224 * 65.56623 * 16 6 5 29 29 H 1.00902 * 111.00150 * 183.07894 * 17 16 6 30 30 H 1.00902 * 110.99702 * 307.03541 * 17 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.8757 1.9189 0.8983 5 6 3.0534 3.2078 0.5250 6 6 3.9219 4.2327 1.2078 7 1 4.2186 4.9952 0.4877 8 6 5.1512 3.5602 1.7624 9 1 5.1243 3.1105 2.7440 10 6 6.3102 3.5190 1.0167 11 7 7.4166 3.0455 1.5469 12 14 6.3088 4.1354 -0.7466 13 1 6.7163 5.5632 -0.7721 14 1 7.2645 3.3335 -1.5521 15 1 4.9446 3.9997 -1.3174 16 6 3.1392 4.8857 2.3487 17 7 3.9358 5.9754 2.9282 18 7 2.3064 3.3929 -0.5692 19 7 1.7056 2.2917 -0.8543 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5139 0.8899 25 1 3.3273 1.4201 1.7430 26 1 8.2320 3.0161 1.0223 27 1 2.2016 5.2864 1.9634 28 1 2.9280 4.1418 3.1168 29 1 3.4618 6.3903 3.7165 30 1 4.8555 5.6521 3.1885 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259860398.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:58 Heat of formation + Delta-G solvation = 87.492906 kcal Electronic energy + Delta-G solvation = -13988.269597 eV Core-core repulsion = 11627.521783 eV Total energy + Delta-G solvation = -2360.747813 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.43182 -35.81344 -34.63098 -32.27999 -30.86600 -30.37011 -27.70377 -24.39914 -24.18328 -21.92161 -20.61767 -19.28610 -16.92841 -16.82099 -15.81757 -14.88278 -14.34599 -14.20314 -14.11859 -13.80211 -12.77042 -12.55203 -12.34675 -12.06739 -11.99159 -11.47052 -11.38785 -10.96423 -10.63190 -10.16689 -9.95485 -9.76902 -9.28334 -9.16878 -8.62470 -8.13542 -7.79355 -6.16155 -4.18833 2.36234 2.92981 3.36242 3.43903 3.50176 3.62061 4.46052 4.61869 4.86535 5.04927 5.10112 5.33570 5.50663 5.60303 5.64566 5.93788 6.05600 6.17397 6.29824 6.43872 6.45729 6.73935 7.20888 7.27094 7.33585 7.68456 8.06105 8.33895 8.42786 8.85383 9.34367 9.49255 10.94721 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.029498 B = 0.011482 C = 0.009978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.979880 B = 2437.993953 C = 2805.433459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.116 3.884 3 N -0.307 5.307 4 C -0.040 4.040 5 C 0.016 3.984 6 C 0.090 3.910 7 H 0.058 0.942 8 C -0.514 4.514 9 H 0.074 0.926 10 C 0.084 3.916 11 N -0.893 5.893 12 Si 0.864 3.136 13 H -0.273 1.273 14 H -0.293 1.293 15 H -0.250 1.250 16 C 0.090 3.910 17 N -0.848 5.848 18 N -0.283 5.283 19 N -0.115 5.115 20 H 0.072 0.928 21 H 0.076 0.924 22 H 0.062 0.938 23 H 0.090 0.910 24 H 0.100 0.900 25 H 0.186 0.814 26 H 0.265 0.735 27 H 0.046 0.954 28 H 0.014 0.986 29 H 0.322 0.678 30 H 0.355 0.645 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.117 -5.745 0.572 11.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.005 4.005 3 N -0.103 5.103 4 C -0.189 4.189 5 C -0.122 4.122 6 C 0.068 3.932 7 H 0.076 0.924 8 C -0.552 4.552 9 H 0.092 0.908 10 C -0.119 4.119 11 N -0.529 5.529 12 Si 0.690 3.310 13 H -0.199 1.199 14 H -0.219 1.219 15 H -0.173 1.173 16 C -0.042 4.042 17 N -0.378 5.378 18 N -0.150 5.150 19 N -0.094 5.094 20 H 0.091 0.909 21 H 0.095 0.905 22 H 0.081 0.919 23 H 0.109 0.891 24 H 0.119 0.881 25 H 0.203 0.797 26 H 0.074 0.926 27 H 0.065 0.935 28 H 0.032 0.968 29 H 0.132 0.868 30 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -10.835 -5.148 -1.456 12.083 hybrid contribution 0.864 -0.965 0.853 1.551 sum -9.971 -6.113 -0.604 11.711 Atomic orbital electron populations 1.22047 0.93400 1.02939 1.03805 1.21873 0.96244 0.77826 1.04603 1.47284 1.31844 1.11299 1.19831 1.23363 0.99600 0.96249 0.99679 1.23153 0.98749 0.95980 0.94327 1.17655 0.91558 0.91054 0.92891 0.92404 1.20777 0.92871 1.37766 1.03801 0.90796 1.24987 0.95180 0.93844 0.97930 1.69904 1.00228 1.45797 1.37003 0.86969 0.79339 0.79212 0.85438 1.19874 1.21931 1.17306 1.21562 0.95113 0.91283 0.96247 1.58707 1.07765 1.34661 1.36662 1.75013 1.09406 1.15671 1.14892 1.78060 1.22278 0.93523 1.15519 0.90920 0.90529 0.91928 0.89129 0.88137 0.79731 0.92555 0.93523 0.96795 0.86811 0.82968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.61 10.04 37.16 0.37 -1.24 16 2 C 0.12 1.36 7.17 -4.04 -0.03 1.33 16 3 N -0.31 -5.47 3.44 -61.27 -0.21 -5.68 16 4 C -0.04 -0.79 10.80 -17.04 -0.18 -0.97 16 5 C 0.02 0.37 5.39 -82.78 -0.45 -0.08 16 6 C 0.09 2.13 2.01 -92.93 -0.19 1.94 16 7 H 0.06 1.49 5.80 -51.93 -0.30 1.19 16 8 C -0.51 -13.40 7.25 -34.44 -0.25 -13.65 16 9 H 0.07 2.03 8.06 -52.49 -0.42 1.60 16 10 C 0.08 2.35 5.47 -17.82 -0.10 2.25 16 11 N -0.89 -26.06 13.96 55.43 0.77 -25.28 16 12 Si 0.86 22.15 26.80 -169.99 -4.56 17.60 16 13 H -0.27 -6.96 7.11 56.52 0.40 -6.56 16 14 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 15 H -0.25 -6.57 6.47 56.52 0.37 -6.20 16 16 C 0.09 1.85 6.22 -3.83 -0.02 1.83 16 17 N -0.85 -16.41 9.64 -10.37 -0.10 -16.51 16 18 N -0.28 -6.70 12.41 33.29 0.41 -6.29 16 19 N -0.12 -2.42 12.91 60.35 0.78 -1.64 16 20 H 0.07 0.81 8.12 -51.93 -0.42 0.39 16 21 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 22 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 24 H 0.10 0.92 8.07 -51.93 -0.42 0.50 16 25 H 0.19 3.34 8.01 -52.49 -0.42 2.92 16 26 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 27 H 0.05 0.94 8.14 -51.92 -0.42 0.52 16 28 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.32 5.12 9.08 -39.29 -0.36 4.76 16 30 H 0.36 7.31 8.02 -39.29 -0.32 6.99 16 LS Contribution 258.35 15.07 3.89 3.89 Total: -1.00 -31.97 258.35 -3.79 -35.76 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -3.94 Total: 6.74 kcal Atomic # 6 Polarization: -7.75 SS G_CDS: -0.84 Total: -8.59 kcal Atomic # 7 Polarization: -57.05 SS G_CDS: 1.66 Total: -55.40 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.56 Total: 17.60 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -31.97 -3.79 -35.76 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259860398.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.253 kcal (2) G-P(sol) polarization free energy of solvation -31.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds