Wall clock time and date at job start Mon Mar 30 2020 02:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46494 * 109.47205 * 2 1 4 4 C 1.35319 * 125.86622 * 125.00135 * 3 2 1 5 5 C 1.35349 * 106.17297 * 180.02562 * 4 3 2 6 6 C 1.50702 * 126.74978 * 179.97438 * 5 4 3 7 7 H 1.08999 * 109.47025 * 155.00006 * 6 5 4 8 8 C 1.50701 * 109.47080 * 35.00121 * 6 5 4 9 9 H 1.08002 * 119.99972 * 273.67665 * 8 6 5 10 10 C 1.37880 * 119.99844 * 93.68150 * 8 6 5 11 11 N 1.31512 * 119.99307 * 173.60467 * 10 8 6 12 12 Si 1.86791 * 120.00404 * 353.59796 * 10 8 6 13 13 H 1.48501 * 109.46972 * 93.12665 * 12 10 8 14 14 H 1.48498 * 109.47456 * 213.12485 * 12 10 8 15 15 H 1.48503 * 109.47321 * 333.12912 * 12 10 8 16 16 C 1.52993 * 109.47128 * 275.00039 * 6 5 4 17 17 N 1.46899 * 109.47459 * 185.57092 * 16 6 5 18 18 N 1.33770 * 106.50199 * 359.97438 * 5 4 3 19 19 N 1.28639 * 108.88418 * 0.02562 * 18 5 4 20 20 H 1.08996 * 109.47038 * 59.99435 * 1 2 3 21 21 H 1.08997 * 109.47126 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46771 * 299.99757 * 1 2 3 23 23 H 1.09001 * 109.46771 * 240.00243 * 2 1 3 24 24 H 1.08996 * 109.47038 * 120.00565 * 2 1 3 25 25 H 1.07994 * 126.91163 * 0.02834 * 4 3 2 26 26 H 0.97003 * 120.00170 * 179.97438 * 11 10 8 27 27 H 1.09007 * 109.47123 * 305.56512 * 16 6 5 28 28 H 1.08995 * 109.47224 * 65.56623 * 16 6 5 29 29 H 1.00902 * 111.00150 * 183.07894 * 17 16 6 30 30 H 1.00902 * 110.99702 * 307.03541 * 17 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.8757 1.9189 0.8983 5 6 3.0534 3.2078 0.5250 6 6 3.9219 4.2327 1.2078 7 1 4.2186 4.9952 0.4877 8 6 5.1512 3.5602 1.7624 9 1 5.1243 3.1105 2.7440 10 6 6.3102 3.5190 1.0167 11 7 7.4166 3.0455 1.5469 12 14 6.3088 4.1354 -0.7466 13 1 6.7163 5.5632 -0.7721 14 1 7.2645 3.3335 -1.5521 15 1 4.9446 3.9997 -1.3174 16 6 3.1392 4.8857 2.3487 17 7 3.9358 5.9754 2.9282 18 7 2.3064 3.3929 -0.5692 19 7 1.7056 2.2917 -0.8543 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5139 0.8899 25 1 3.3273 1.4201 1.7430 26 1 8.2320 3.0161 1.0223 27 1 2.2016 5.2864 1.9634 28 1 2.9280 4.1418 3.1168 29 1 3.4618 6.3903 3.7165 30 1 4.8555 5.6521 3.1885 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259860398.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:58 Heat of formation + Delta-G solvation = 62.597061 kcal Electronic energy + Delta-G solvation = -13989.349161 eV Core-core repulsion = 11627.521783 eV Total energy + Delta-G solvation = -2361.827378 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -44.00359 -37.48328 -35.97946 -34.27659 -32.55666 -31.59169 -29.46279 -26.22001 -25.40854 -23.55229 -22.09182 -20.98304 -18.97709 -18.19659 -17.22826 -16.45877 -16.35135 -15.80933 -15.37770 -15.19847 -14.59047 -13.95895 -13.82118 -13.60209 -13.34460 -13.06779 -12.82856 -12.50441 -12.26570 -11.91898 -11.79828 -11.73971 -11.12381 -10.80318 -10.74255 -9.79983 -9.36771 -8.30993 -6.32031 0.82688 1.30461 1.36103 1.55044 1.66982 1.79205 2.36241 3.03281 3.61809 3.81794 4.01242 4.07928 4.28527 4.36414 4.47729 4.62675 4.71586 4.77431 4.80959 4.95889 5.02263 5.21549 5.38445 5.52889 5.67880 5.92103 6.28115 6.47446 6.73212 6.91211 7.36889 7.72103 8.82940 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.029498 B = 0.011482 C = 0.009978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.979880 B = 2437.993953 C = 2805.433459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.099 3.901 3 N -0.289 5.289 4 C -0.034 4.034 5 C -0.011 4.011 6 C 0.092 3.908 7 H 0.033 0.967 8 C -0.490 4.490 9 H 0.060 0.940 10 C 0.045 3.955 11 N -0.929 5.929 12 Si 0.910 3.090 13 H -0.273 1.273 14 H -0.294 1.294 15 H -0.261 1.261 16 C 0.097 3.903 17 N -0.852 5.852 18 N -0.321 5.321 19 N -0.123 5.123 20 H 0.055 0.945 21 H 0.114 0.886 22 H 0.055 0.945 23 H 0.107 0.893 24 H 0.132 0.868 25 H 0.204 0.796 26 H 0.265 0.735 27 H 0.051 0.949 28 H 0.024 0.976 29 H 0.343 0.657 30 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.348 -6.936 0.859 13.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.020 4.020 3 N -0.086 5.086 4 C -0.185 4.185 5 C -0.150 4.150 6 C 0.071 3.929 7 H 0.052 0.948 8 C -0.528 4.528 9 H 0.078 0.922 10 C -0.155 4.155 11 N -0.568 5.568 12 Si 0.737 3.263 13 H -0.198 1.198 14 H -0.221 1.221 15 H -0.185 1.185 16 C -0.035 4.035 17 N -0.383 5.383 18 N -0.187 5.187 19 N -0.101 5.101 20 H 0.074 0.926 21 H 0.132 0.868 22 H 0.074 0.926 23 H 0.125 0.875 24 H 0.150 0.850 25 H 0.221 0.779 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.042 0.958 29 H 0.156 0.844 30 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -12.104 -6.342 -1.177 13.716 hybrid contribution 1.133 -0.679 0.803 1.546 sum -10.971 -7.020 -0.374 13.030 Atomic orbital electron populations 1.22033 0.91829 1.05018 1.02607 1.22536 0.97603 0.74765 1.07055 1.47757 1.30120 1.12731 1.17951 1.23555 0.99341 0.95434 1.00143 1.22974 0.99944 0.97017 0.95061 1.17531 0.91381 0.90719 0.93277 0.94836 1.20853 0.93357 1.35920 1.02672 0.92228 1.25438 0.95372 0.94722 0.99999 1.69973 1.00772 1.48136 1.37962 0.86259 0.78281 0.78721 0.83053 1.19845 1.22100 1.18530 1.21437 0.94851 0.91708 0.95503 1.58647 1.07510 1.34202 1.37944 1.74952 1.10737 1.17312 1.15716 1.77948 1.22312 0.93652 1.16238 0.92597 0.86792 0.92605 0.87455 0.84980 0.77913 0.92583 0.93031 0.95777 0.84432 0.83755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.58 10.04 71.98 0.72 -1.86 16 2 C 0.10 1.97 7.17 86.38 0.62 2.59 16 3 N -0.29 -9.66 3.44 -347.75 -1.20 -10.86 16 4 C -0.03 -1.29 10.80 83.49 0.90 -0.39 16 5 C -0.01 -0.49 5.39 41.60 0.22 -0.27 16 6 C 0.09 4.33 2.01 -12.29 -0.02 4.31 16 7 H 0.03 1.73 5.80 -2.39 -0.01 1.72 16 8 C -0.49 -25.28 7.25 25.60 0.19 -25.10 16 9 H 0.06 3.23 8.06 -2.91 -0.02 3.21 16 10 C 0.04 2.47 5.47 84.66 0.46 2.93 16 11 N -0.93 -54.33 13.96 21.45 0.30 -54.03 16 12 Si 0.91 46.15 26.80 68.60 1.84 47.99 16 13 H -0.27 -13.67 7.11 99.48 0.71 -12.96 16 14 H -0.29 -14.84 7.11 99.48 0.71 -14.13 16 15 H -0.26 -13.69 6.47 99.48 0.64 -13.05 16 16 C 0.10 3.87 6.22 86.30 0.54 4.41 16 17 N -0.85 -31.85 9.64 -186.73 -1.80 -33.65 16 18 N -0.32 -15.04 12.41 -48.60 -0.60 -15.64 16 19 N -0.12 -5.01 12.91 37.02 0.48 -4.53 16 20 H 0.05 1.12 8.12 -2.39 -0.02 1.10 16 21 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 22 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 23 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 24 H 0.13 1.83 8.07 -2.39 -0.02 1.82 16 25 H 0.20 6.82 8.01 -2.91 -0.02 6.80 16 26 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 27 H 0.05 2.02 8.14 -2.38 -0.02 2.00 16 28 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.34 10.26 9.08 -89.69 -0.81 9.45 16 30 H 0.35 14.02 8.02 -89.69 -0.72 13.31 16 Total: -1.00 -68.23 258.35 2.20 -66.03 By element: Atomic # 1 Polarization: 18.52 SS G_CDS: -0.44 Total: 18.07 kcal Atomic # 6 Polarization: -17.01 SS G_CDS: 3.63 Total: -13.38 kcal Atomic # 7 Polarization: -115.89 SS G_CDS: -2.82 Total: -118.72 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 1.84 Total: 47.99 kcal Total: -68.23 2.20 -66.03 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259860398.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.625 kcal (2) G-P(sol) polarization free energy of solvation -68.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds