Wall clock time and date at job start Mon Mar 30 2020 02:50:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.46984 * 2 1 4 4 C 1.35316 * 125.86780 * 124.99506 * 3 2 1 5 5 C 1.35355 * 106.17300 * 179.97438 * 4 3 2 6 6 C 1.50699 * 126.74766 * 180.02562 * 5 4 3 7 7 H 1.09001 * 109.47101 * 204.99976 * 6 5 4 8 8 C 1.50692 * 109.47599 * 325.00633 * 6 5 4 9 9 H 1.08008 * 119.99832 * 359.97438 * 8 6 5 10 10 C 1.37880 * 120.00332 * 180.02562 * 8 6 5 11 11 N 1.31517 * 119.99749 * 359.97438 * 10 8 6 12 12 Si 1.86800 * 120.00178 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.47263 * 59.99686 * 12 10 8 14 14 H 1.48495 * 109.47316 * 180.02562 * 12 10 8 15 15 H 1.48503 * 109.47005 * 299.99953 * 12 10 8 16 16 C 1.53005 * 109.46885 * 85.00715 * 6 5 4 17 17 N 1.46900 * 109.47118 * 64.99831 * 16 6 5 18 18 N 1.33768 * 106.49655 * 0.02562 * 5 4 3 19 19 N 1.28635 * 108.88723 * 359.97438 * 18 5 4 20 20 H 1.09008 * 109.46853 * 179.97438 * 1 2 3 21 21 H 1.08999 * 109.47457 * 299.99869 * 1 2 3 22 22 H 1.09001 * 109.47046 * 60.00076 * 1 2 3 23 23 H 1.08999 * 109.47457 * 240.00131 * 2 1 3 24 24 H 1.09001 * 109.47046 * 119.99924 * 2 1 3 25 25 H 1.07996 * 126.91291 * 0.25267 * 4 3 2 26 26 H 0.96999 * 119.99254 * 179.97438 * 11 10 8 27 27 H 1.08995 * 109.46783 * 184.99985 * 16 6 5 28 28 H 1.09007 * 109.46937 * 304.99343 * 16 6 5 29 29 H 1.00895 * 111.00375 * 56.04787 * 17 16 6 30 30 H 1.00901 * 110.99484 * 180.02562 * 17 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8755 1.9191 0.8983 5 6 3.0540 3.2077 0.5243 6 6 3.9236 4.2322 1.2063 7 1 3.5500 5.2318 0.9839 8 6 3.8943 4.0047 2.6956 9 1 3.3046 3.1990 3.1073 10 6 4.6196 4.8258 3.5329 11 7 5.3373 5.8072 3.0316 12 14 4.5826 4.5442 5.3792 13 1 5.0918 3.1826 5.6825 14 1 5.4387 5.5545 6.0512 15 1 3.1875 4.6720 5.8716 16 6 5.3609 4.1004 0.6984 17 7 5.4084 4.4393 -0.7302 18 7 2.3068 3.3927 -0.5697 19 7 1.7058 2.2916 -0.8546 20 1 -0.3633 -1.0278 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 1.8934 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 3.3296 1.4195 1.7412 26 1 5.8472 6.3850 3.6207 27 1 6.0065 4.7800 1.2547 28 1 5.7039 3.0755 0.8404 29 1 5.0349 5.3618 -0.8957 30 1 6.3479 4.3594 -1.0896 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259860399.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:00 Heat of formation + Delta-G solvation = 88.765351 kcal Electronic energy + Delta-G solvation = -13898.754858 eV Core-core repulsion = 11538.062222 eV Total energy + Delta-G solvation = -2360.692636 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.28064 -35.63213 -34.49217 -32.12087 -30.61242 -30.24196 -27.41912 -24.24390 -23.91970 -21.95741 -20.60318 -19.30846 -16.75026 -16.27844 -15.67615 -14.78016 -14.51436 -14.12542 -13.90531 -13.39524 -12.73909 -12.58826 -12.13354 -11.94755 -11.60567 -11.29984 -11.06643 -10.98240 -10.63923 -10.18291 -9.90441 -9.77949 -9.25447 -9.03633 -8.53187 -7.98974 -7.44827 -6.08010 -4.15577 2.48223 3.03676 3.26578 3.32212 3.33766 3.72341 4.35756 4.68046 4.93498 5.14684 5.21468 5.36305 5.57652 5.68188 5.84753 6.01643 6.11658 6.39892 6.53764 6.79811 7.02624 7.33240 7.43325 7.54577 7.81829 7.92628 8.14179 8.43830 8.49582 8.87353 9.48236 9.51846 10.96750 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.031842 B = 0.010007 C = 0.008094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.124963 B = 2797.244068 C = 3458.546245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.118 3.882 3 N -0.307 5.307 4 C -0.064 4.064 5 C 0.047 3.953 6 C 0.127 3.873 7 H 0.042 0.958 8 C -0.513 4.513 9 H 0.059 0.941 10 C 0.063 3.937 11 N -0.889 5.889 12 Si 0.896 3.104 13 H -0.277 1.277 14 H -0.287 1.287 15 H -0.277 1.277 16 C 0.069 3.931 17 N -0.855 5.855 18 N -0.270 5.270 19 N -0.116 5.116 20 H 0.074 0.926 21 H 0.062 0.938 22 H 0.072 0.928 23 H 0.089 0.911 24 H 0.097 0.903 25 H 0.181 0.819 26 H 0.263 0.737 27 H 0.069 0.931 28 H 0.039 0.961 29 H 0.333 0.667 30 H 0.317 0.683 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.477 -9.814 -2.387 10.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.004 4.004 3 N -0.103 5.103 4 C -0.213 4.213 5 C -0.090 4.090 6 C 0.106 3.894 7 H 0.060 0.940 8 C -0.552 4.552 9 H 0.078 0.922 10 C -0.138 4.138 11 N -0.527 5.527 12 Si 0.724 3.276 13 H -0.202 1.202 14 H -0.212 1.212 15 H -0.202 1.202 16 C -0.062 4.062 17 N -0.382 5.382 18 N -0.137 5.137 19 N -0.095 5.095 20 H 0.093 0.907 21 H 0.081 0.919 22 H 0.091 0.909 23 H 0.107 0.893 24 H 0.116 0.884 25 H 0.198 0.802 26 H 0.073 0.927 27 H 0.087 0.913 28 H 0.058 0.942 29 H 0.144 0.856 30 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -4.691 -9.993 -3.684 11.637 hybrid contribution 1.304 0.148 2.372 2.711 sum -3.387 -9.845 -1.312 10.494 Atomic orbital electron populations 1.22050 0.93493 1.02811 1.03914 1.21819 0.96274 0.78075 1.04226 1.47206 1.32054 1.11170 1.19911 1.23329 1.01401 0.96781 0.99786 1.22591 0.98730 0.94677 0.92980 1.17190 0.88390 0.91533 0.92273 0.93953 1.21079 1.28681 1.15280 0.90136 0.92236 1.24958 0.95131 0.94853 0.98897 1.69862 1.29991 1.17773 1.35111 0.86586 0.78082 0.77908 0.85031 1.20208 1.21234 1.20215 1.21961 0.99676 0.99209 0.85313 1.58951 1.25405 1.34389 1.19477 1.74979 1.09211 1.15151 1.14325 1.78061 1.22266 0.93566 1.15576 0.90667 0.91854 0.90909 0.89314 0.88424 0.80231 0.92738 0.91303 0.94195 0.85601 0.87382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.73 10.04 37.16 0.37 -1.35 16 2 C 0.12 1.40 7.18 -4.04 -0.03 1.37 16 3 N -0.31 -5.55 3.44 -61.26 -0.21 -5.76 16 4 C -0.06 -1.30 10.47 -17.04 -0.18 -1.48 16 5 C 0.05 1.13 5.88 -82.78 -0.49 0.64 16 6 C 0.13 3.23 2.38 -92.93 -0.22 3.01 16 7 H 0.04 1.20 8.14 -51.93 -0.42 0.78 16 8 C -0.51 -13.52 8.28 -34.44 -0.29 -13.81 16 9 H 0.06 1.52 6.89 -52.48 -0.36 1.16 16 10 C 0.06 1.68 5.29 -17.82 -0.09 1.59 16 11 N -0.89 -24.41 11.30 55.43 0.63 -23.78 16 12 Si 0.90 20.44 29.54 -169.99 -5.02 15.42 16 13 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 14 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 15 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 16 C 0.07 1.64 6.00 -3.82 -0.02 1.62 16 17 N -0.86 -18.09 9.34 -10.37 -0.10 -18.19 16 18 N -0.27 -6.50 12.41 33.29 0.41 -6.08 16 19 N -0.12 -2.48 12.91 60.35 0.78 -1.70 16 20 H 0.07 0.55 8.14 -51.92 -0.42 0.13 16 21 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 22 H 0.07 0.86 8.12 -51.93 -0.42 0.44 16 23 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 24 H 0.10 0.91 8.07 -51.93 -0.42 0.49 16 25 H 0.18 3.25 7.75 -52.49 -0.41 2.84 16 26 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 27 H 0.07 1.78 5.95 -51.93 -0.31 1.47 16 28 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16 29 H 0.33 7.00 8.99 -39.29 -0.35 6.65 16 30 H 0.32 5.84 9.08 -39.29 -0.36 5.49 16 LS Contribution 259.65 15.07 3.91 3.91 Total: -1.00 -30.65 259.65 -4.42 -35.07 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: -3.88 Total: 9.53 kcal Atomic # 6 Polarization: -7.47 SS G_CDS: -0.94 Total: -8.42 kcal Atomic # 7 Polarization: -57.03 SS G_CDS: 1.51 Total: -55.52 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -30.65 -4.42 -35.07 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259860399.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.835 kcal (2) G-P(sol) polarization free energy of solvation -30.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds