Wall clock time and date at job start Mon Mar 30 2020 02:50:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.46984 * 2 1 4 4 C 1.35316 * 125.86780 * 124.99506 * 3 2 1 5 5 C 1.35355 * 106.17300 * 179.97438 * 4 3 2 6 6 C 1.50699 * 126.74766 * 180.02562 * 5 4 3 7 7 H 1.09001 * 109.47101 * 204.99976 * 6 5 4 8 8 C 1.50692 * 109.47599 * 325.00633 * 6 5 4 9 9 H 1.08008 * 119.99832 * 359.97438 * 8 6 5 10 10 C 1.37880 * 120.00332 * 180.02562 * 8 6 5 11 11 N 1.31517 * 119.99749 * 359.97438 * 10 8 6 12 12 Si 1.86800 * 120.00178 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.47263 * 59.99686 * 12 10 8 14 14 H 1.48495 * 109.47316 * 180.02562 * 12 10 8 15 15 H 1.48503 * 109.47005 * 299.99953 * 12 10 8 16 16 C 1.53005 * 109.46885 * 85.00715 * 6 5 4 17 17 N 1.46900 * 109.47118 * 64.99831 * 16 6 5 18 18 N 1.33768 * 106.49655 * 0.02562 * 5 4 3 19 19 N 1.28635 * 108.88723 * 359.97438 * 18 5 4 20 20 H 1.09008 * 109.46853 * 179.97438 * 1 2 3 21 21 H 1.08999 * 109.47457 * 299.99869 * 1 2 3 22 22 H 1.09001 * 109.47046 * 60.00076 * 1 2 3 23 23 H 1.08999 * 109.47457 * 240.00131 * 2 1 3 24 24 H 1.09001 * 109.47046 * 119.99924 * 2 1 3 25 25 H 1.07996 * 126.91291 * 0.25267 * 4 3 2 26 26 H 0.96999 * 119.99254 * 179.97438 * 11 10 8 27 27 H 1.08995 * 109.46783 * 184.99985 * 16 6 5 28 28 H 1.09007 * 109.46937 * 304.99343 * 16 6 5 29 29 H 1.00895 * 111.00375 * 56.04787 * 17 16 6 30 30 H 1.00901 * 110.99484 * 180.02562 * 17 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8755 1.9191 0.8983 5 6 3.0540 3.2077 0.5243 6 6 3.9236 4.2322 1.2063 7 1 3.5500 5.2318 0.9839 8 6 3.8943 4.0047 2.6956 9 1 3.3046 3.1990 3.1073 10 6 4.6196 4.8258 3.5329 11 7 5.3373 5.8072 3.0316 12 14 4.5826 4.5442 5.3792 13 1 5.0918 3.1826 5.6825 14 1 5.4387 5.5545 6.0512 15 1 3.1875 4.6720 5.8716 16 6 5.3609 4.1004 0.6984 17 7 5.4084 4.4393 -0.7302 18 7 2.3068 3.3927 -0.5697 19 7 1.7058 2.2916 -0.8546 20 1 -0.3633 -1.0278 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 1.8934 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 3.3296 1.4195 1.7412 26 1 5.8472 6.3850 3.6207 27 1 6.0065 4.7800 1.2547 28 1 5.7039 3.0755 0.8404 29 1 5.0349 5.3618 -0.8957 30 1 6.3479 4.3594 -1.0896 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259860399.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:00 Heat of formation + Delta-G solvation = 65.623153 kcal Electronic energy + Delta-G solvation = -13899.758379 eV Core-core repulsion = 11538.062222 eV Total energy + Delta-G solvation = -2361.696157 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -43.88092 -37.38168 -35.89936 -34.06328 -32.36520 -31.49155 -29.25236 -25.96451 -25.32637 -23.71484 -22.11931 -21.00686 -18.37546 -18.04334 -17.10678 -16.61955 -16.27032 -15.53006 -15.36794 -15.00917 -14.35721 -13.89935 -13.87509 -13.12044 -13.03920 -12.98829 -12.78723 -12.44706 -12.25549 -12.03782 -11.66336 -11.58281 -11.10678 -10.66933 -10.51458 -9.70738 -9.25381 -8.08234 -6.23499 0.92212 1.47490 1.49260 1.56307 1.76069 1.96265 2.45972 3.19128 3.68484 3.91902 4.05394 4.09596 4.31802 4.43416 4.63085 4.73875 4.79755 4.88251 5.06589 5.10349 5.24602 5.47179 5.59480 5.83731 5.91315 6.01864 6.21924 6.55520 6.75857 6.92490 7.44167 7.85934 8.95586 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.031842 B = 0.010007 C = 0.008094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.124963 B = 2797.244068 C = 3458.546245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.102 3.898 3 N -0.289 5.289 4 C -0.054 4.054 5 C 0.016 3.984 6 C 0.132 3.868 7 H -0.002 1.002 8 C -0.526 4.526 9 H 0.066 0.934 10 C 0.016 3.984 11 N -0.917 5.917 12 Si 0.961 3.039 13 H -0.262 1.262 14 H -0.288 1.288 15 H -0.276 1.276 16 C 0.084 3.916 17 N -0.851 5.851 18 N -0.309 5.309 19 N -0.125 5.125 20 H 0.114 0.886 21 H 0.049 0.951 22 H 0.054 0.946 23 H 0.111 0.889 24 H 0.131 0.869 25 H 0.205 0.795 26 H 0.262 0.738 27 H 0.046 0.954 28 H 0.040 0.960 29 H 0.332 0.668 30 H 0.334 0.666 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.801 -12.260 -1.592 12.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.017 4.017 3 N -0.085 5.085 4 C -0.205 4.205 5 C -0.122 4.122 6 C 0.111 3.889 7 H 0.016 0.984 8 C -0.565 4.565 9 H 0.085 0.915 10 C -0.183 4.183 11 N -0.556 5.556 12 Si 0.786 3.214 13 H -0.187 1.187 14 H -0.213 1.213 15 H -0.201 1.201 16 C -0.047 4.047 17 N -0.379 5.379 18 N -0.175 5.175 19 N -0.103 5.103 20 H 0.133 0.867 21 H 0.069 0.931 22 H 0.074 0.926 23 H 0.129 0.871 24 H 0.149 0.851 25 H 0.222 0.778 26 H 0.072 0.928 27 H 0.064 0.936 28 H 0.059 0.941 29 H 0.144 0.856 30 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -5.031 -12.472 -2.920 13.762 hybrid contribution 1.350 0.829 2.063 2.601 sum -3.681 -11.643 -0.858 12.241 Atomic orbital electron populations 1.22045 0.92375 1.04929 1.02384 1.22496 0.97249 0.74925 1.07066 1.47681 1.30228 1.12649 1.17965 1.23545 1.00980 0.95773 1.00176 1.22422 0.99964 0.95919 0.93923 1.16971 0.89419 0.89976 0.92542 0.98397 1.21368 1.28750 1.15594 0.90810 0.91548 1.25749 0.94718 0.94539 1.03267 1.70007 1.30570 1.18499 1.36506 0.85558 0.77908 0.78306 0.79580 1.18680 1.21332 1.20094 1.21664 0.98365 0.98452 0.86233 1.58865 1.26696 1.34374 1.17944 1.74916 1.10455 1.16852 1.15272 1.77939 1.22301 0.93716 1.16380 0.86708 0.93147 0.92648 0.87067 0.85056 0.77828 0.92848 0.93632 0.94120 0.85642 0.85502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.84 10.04 71.98 0.72 -2.12 16 2 C 0.10 2.03 7.18 86.38 0.62 2.65 16 3 N -0.29 -9.81 3.44 -347.73 -1.20 -11.01 16 4 C -0.05 -2.12 10.47 83.49 0.87 -1.24 16 5 C 0.02 0.76 5.88 41.60 0.24 1.01 16 6 C 0.13 6.86 2.38 -12.29 -0.03 6.84 16 7 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 8 C -0.53 -27.82 8.28 25.60 0.21 -27.61 16 9 H 0.07 3.33 6.89 -2.91 -0.02 3.31 16 10 C 0.02 0.87 5.29 84.66 0.45 1.32 16 11 N -0.92 -51.16 11.30 21.45 0.24 -50.92 16 12 Si 0.96 41.46 29.54 68.60 2.03 43.49 16 13 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 14 H -0.29 -12.36 7.11 99.48 0.71 -11.65 16 15 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 16 C 0.08 4.06 6.00 86.31 0.52 4.58 16 17 N -0.85 -36.34 9.34 -186.71 -1.74 -38.08 16 18 N -0.31 -15.01 12.41 -48.60 -0.60 -15.62 16 19 N -0.12 -5.22 12.91 37.02 0.48 -4.75 16 20 H 0.11 1.16 8.14 -2.38 -0.02 1.15 16 21 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 22 H 0.05 1.19 8.12 -2.39 -0.02 1.17 16 23 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 24 H 0.13 1.80 8.07 -2.39 -0.02 1.78 16 25 H 0.20 6.78 7.75 -2.91 -0.02 6.76 16 26 H 0.26 13.99 8.31 -92.71 -0.77 13.22 16 27 H 0.05 2.42 5.95 -2.39 -0.01 2.40 16 28 H 0.04 1.92 8.14 -2.38 -0.02 1.90 16 29 H 0.33 14.37 8.99 -89.70 -0.81 13.57 16 30 H 0.33 12.20 9.08 -89.69 -0.81 11.39 16 Total: -1.00 -67.17 259.65 2.35 -64.82 By element: Atomic # 1 Polarization: 27.12 SS G_CDS: -0.46 Total: 26.66 kcal Atomic # 6 Polarization: -18.20 SS G_CDS: 3.61 Total: -14.59 kcal Atomic # 7 Polarization: -117.55 SS G_CDS: -2.82 Total: -120.38 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 2.03 Total: 43.49 kcal Total: -67.17 2.35 -64.82 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259860399.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.440 kcal (2) G-P(sol) polarization free energy of solvation -67.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds