Wall clock time and date at job start Mon Mar 30 2020 02:39:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50697 * 109.47135 * 2 1 4 4 N 1.35314 * 126.91111 * 265.02348 * 3 2 1 5 5 H 0.96995 * 125.87275 * 359.71951 * 4 3 2 6 6 N 1.28724 * 108.26263 * 179.73694 * 4 3 2 7 7 N 1.28632 * 110.17684 * 359.97438 * 6 4 3 8 8 C 1.33770 * 108.88863 * 359.97438 * 7 6 4 9 9 C 1.50703 * 126.75334 * 179.97438 * 8 7 6 10 10 H 1.08997 * 109.46910 * 180.02562 * 9 8 7 11 11 C 1.50700 * 109.46907 * 60.00571 * 9 8 7 12 12 H 1.08006 * 119.99693 * 296.70149 * 11 9 8 13 13 C 1.37872 * 120.00085 * 116.69584 * 11 9 8 14 14 N 1.31517 * 120.00150 * 6.56511 * 13 11 9 15 15 Si 1.86805 * 120.00009 * 186.55911 * 13 11 9 16 16 H 1.48505 * 109.46828 * 90.00471 * 15 13 11 17 17 H 1.48493 * 109.47282 * 210.00190 * 15 13 11 18 18 H 1.48494 * 109.47122 * 330.00836 * 15 13 11 19 19 C 1.52998 * 109.47196 * 300.00361 * 9 8 7 20 20 N 1.46901 * 109.46875 * 185.30920 * 19 9 8 21 21 H 1.09002 * 109.46764 * 59.99672 * 1 2 3 22 22 H 1.08997 * 109.47185 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.46913 * 300.00267 * 1 2 3 24 24 H 1.09005 * 109.46958 * 240.00180 * 2 1 3 25 25 H 1.08994 * 109.47071 * 120.00360 * 2 1 3 26 26 H 0.97003 * 119.99914 * 179.97438 * 14 13 11 27 27 H 1.09003 * 109.47161 * 305.30528 * 19 9 8 28 28 H 1.08994 * 109.46834 * 65.31188 * 19 9 8 29 29 H 1.00904 * 111.00195 * 56.04614 * 20 19 9 30 30 H 1.00901 * 110.99936 * 180.02562 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.3917 2.1557 -1.0778 5 1 2.3754 1.8570 -2.0005 6 7 2.7594 3.3193 -0.6683 7 7 2.6617 3.3903 0.6124 8 6 2.2078 2.2210 1.0775 9 6 1.9457 1.8641 2.5179 10 1 1.5813 0.8386 2.5776 11 6 0.9100 2.7995 3.0867 12 1 1.1195 3.8565 3.1604 13 6 -0.3048 2.3061 3.5128 14 7 -0.5129 1.0079 3.5441 15 14 -1.6553 3.4815 4.0459 16 1 -2.4927 3.8382 2.8725 17 1 -2.5009 2.8289 5.0774 18 1 -1.0458 4.7119 4.6114 19 6 3.2429 1.9914 3.3192 20 7 3.0178 1.5225 4.6930 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 -1.3675 0.6607 3.8443 27 1 4.0196 1.3863 2.8515 28 1 3.5572 3.0348 3.3382 29 1 2.6637 0.5777 4.6993 30 1 3.8604 1.5969 5.2431 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259914173.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:23 Heat of formation + Delta-G solvation = 54.061578 kcal Electronic energy + Delta-G solvation = -14264.028414 eV Core-core repulsion = 11901.830909 eV Total energy + Delta-G solvation = -2362.197505 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -44.01609 -37.16088 -35.27935 -34.03075 -33.80355 -31.16202 -29.01679 -26.08367 -24.79940 -23.90298 -22.50898 -21.03194 -18.94606 -18.02107 -16.84954 -16.47758 -16.31689 -15.62762 -15.27073 -14.85267 -14.30577 -13.94737 -13.55525 -13.30459 -12.90686 -12.69003 -12.55425 -12.38748 -12.33692 -11.98531 -11.64871 -11.44879 -10.98489 -10.88480 -10.42894 -9.57893 -9.12350 -7.97688 -5.96010 0.80992 1.41946 1.45329 1.54412 1.85958 2.10792 2.54723 3.32878 3.78413 3.97308 4.06019 4.36836 4.47946 4.52942 4.67919 4.72974 4.83770 4.96069 5.10047 5.28214 5.29908 5.61611 5.64961 5.79556 5.96172 6.28704 6.43355 6.67745 6.99490 7.07998 7.62514 7.76117 9.09617 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.025101 B = 0.013093 C = 0.011766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.211784 B = 2137.976318 C = 2379.091045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.032 4.032 3 C -0.023 4.023 4 N -0.377 5.377 5 H 0.458 0.542 6 N -0.124 5.124 7 N -0.304 5.304 8 C 0.005 3.995 9 C 0.110 3.890 10 H 0.077 0.923 11 C -0.483 4.483 12 H 0.024 0.976 13 C 0.041 3.959 14 N -0.898 5.898 15 Si 0.928 3.072 16 H -0.286 1.286 17 H -0.279 1.279 18 H -0.284 1.284 19 C 0.092 3.908 20 N -0.836 5.836 21 H 0.049 0.951 22 H 0.078 0.922 23 H 0.044 0.956 24 H 0.107 0.893 25 H 0.085 0.915 26 H 0.259 0.741 27 H 0.002 0.998 28 H 0.037 0.963 29 H 0.340 0.660 30 H 0.336 0.664 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.627 -6.537 -7.584 10.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.071 4.071 3 C -0.157 4.157 4 N -0.101 5.101 5 H 0.307 0.693 6 N -0.103 5.103 7 N -0.171 5.171 8 C -0.135 4.135 9 C 0.089 3.911 10 H 0.095 0.905 11 C -0.522 4.522 12 H 0.042 0.958 13 C -0.159 4.159 14 N -0.537 5.537 15 Si 0.757 3.243 16 H -0.213 1.213 17 H -0.205 1.205 18 H -0.209 1.209 19 C -0.039 4.039 20 N -0.365 5.365 21 H 0.068 0.932 22 H 0.096 0.904 23 H 0.063 0.937 24 H 0.125 0.875 25 H 0.103 0.897 26 H 0.069 0.931 27 H 0.020 0.980 28 H 0.056 0.944 29 H 0.153 0.847 30 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 3.507 -4.593 -7.789 9.699 hybrid contribution -0.537 -0.824 -0.125 0.992 sum 2.970 -5.418 -7.915 10.041 Atomic orbital electron populations 1.21734 0.94417 1.02588 1.01680 1.20028 0.96116 0.86364 1.04614 1.22379 1.07659 0.99076 0.86548 1.44806 1.44551 1.09622 1.11142 0.69336 1.78021 1.21014 1.03560 1.07660 1.74919 1.18150 1.23113 1.00930 1.22912 1.01170 0.89639 0.99744 1.17378 0.92344 0.98907 0.82483 0.90500 1.20742 0.99291 0.92666 1.39459 0.95780 1.25209 0.99302 0.96052 0.95325 1.69877 1.24143 1.11231 1.48487 0.86037 0.80453 0.80080 0.77768 1.21256 1.20481 1.20928 1.21606 0.95944 0.97336 0.89031 1.58301 1.35523 1.29882 1.12829 0.93173 0.90360 0.93685 0.87453 0.89702 0.93115 0.98014 0.94441 0.84733 0.85203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.49 9.90 71.98 0.71 -3.78 16 2 C -0.03 -0.90 6.08 29.85 0.18 -0.71 16 3 C -0.02 -0.82 6.56 41.35 0.27 -0.55 16 4 N -0.38 -11.84 6.98 -47.79 -0.33 -12.17 16 5 H 0.46 9.30 8.96 -219.96 -1.97 7.33 16 6 N -0.12 -4.99 13.38 37.02 0.50 -4.49 16 7 N -0.30 -14.44 12.41 -48.60 -0.60 -15.05 16 8 C 0.00 0.21 5.74 41.60 0.24 0.45 16 9 C 0.11 5.32 2.63 -12.29 -0.03 5.29 16 10 H 0.08 3.83 5.89 -2.39 -0.01 3.82 16 11 C -0.48 -26.88 8.02 25.60 0.21 -26.68 16 12 H 0.02 1.45 7.82 -2.91 -0.02 1.43 16 13 C 0.04 2.23 5.45 84.65 0.46 2.69 16 14 N -0.90 -47.78 12.43 21.45 0.27 -47.52 16 15 Si 0.93 44.95 29.54 68.60 2.03 46.98 16 16 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 17 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 18 H -0.28 -14.09 7.11 99.48 0.71 -13.38 16 19 C 0.09 4.09 6.14 86.30 0.53 4.62 16 20 N -0.84 -33.98 9.35 -186.72 -1.75 -35.73 16 21 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 22 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 23 H 0.04 1.85 7.95 -2.39 -0.02 1.83 16 24 H 0.11 2.02 8.14 -2.38 -0.02 2.00 16 25 H 0.08 2.53 7.51 -2.39 -0.02 2.52 16 26 H 0.26 13.33 8.31 -92.71 -0.77 12.56 16 27 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 28 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.34 13.43 8.99 -89.69 -0.81 12.63 16 30 H 0.34 11.25 9.08 -89.69 -0.81 10.43 16 Total: -1.00 -65.94 261.14 0.26 -65.68 By element: Atomic # 1 Polarization: 23.39 SS G_CDS: -2.41 Total: 20.98 kcal Atomic # 6 Polarization: -21.25 SS G_CDS: 2.57 Total: -18.68 kcal Atomic # 7 Polarization: -113.04 SS G_CDS: -1.92 Total: -114.96 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -65.94 0.26 -65.68 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259914173.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.741 kcal (2) G-P(sol) polarization free energy of solvation -65.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds