Wall clock time and date at job start Mon Mar 30 2020 02:25:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35762 * 117.00338 * 2 1 4 4 C 1.35945 * 126.19637 * 266.30589 * 3 2 1 5 5 C 1.50702 * 126.08061 * 0.02562 * 4 3 2 6 6 H 1.08999 * 109.46935 * 0.20203 * 5 4 3 7 7 C 1.52999 * 109.47359 * 120.20758 * 5 4 3 8 8 C 1.50697 * 109.46651 * 240.20880 * 5 4 3 9 9 H 1.08003 * 120.00494 * 0.02562 * 8 5 4 10 10 C 1.37880 * 119.99810 * 180.02562 * 8 5 4 11 11 N 1.31517 * 120.00251 * 359.97438 * 10 8 5 12 12 Si 1.86803 * 119.99949 * 179.97438 * 10 8 5 13 13 H 1.48495 * 109.47472 * 0.02562 * 12 10 8 14 14 H 1.48504 * 109.46959 * 120.00250 * 12 10 8 15 15 H 1.48505 * 109.46997 * 239.99605 * 12 10 8 16 16 C 1.39818 * 107.83467 * 180.15783 * 4 3 2 17 17 N 1.30831 * 108.28393 * 359.60517 * 16 4 3 18 18 N 1.35135 * 126.19038 * 86.02691 * 3 2 1 19 19 C 1.46506 * 126.03814 * 0.02562 * 18 3 2 20 20 H 1.08999 * 109.47602 * 301.41895 * 1 2 3 21 21 H 1.09004 * 109.46714 * 61.41805 * 1 2 3 22 22 H 1.09000 * 109.47318 * 181.40801 * 1 2 3 23 23 H 1.08998 * 109.46882 * 179.97438 * 7 5 4 24 24 H 1.09002 * 109.47067 * 300.00171 * 7 5 4 25 25 H 1.09005 * 109.46917 * 59.99646 * 7 5 4 26 26 H 0.96996 * 120.00155 * 180.02562 * 11 10 8 27 27 H 1.08001 * 125.85510 * 179.86474 * 16 4 3 28 28 H 1.08997 * 109.46452 * 275.10400 * 19 18 3 29 29 H 1.08999 * 109.47147 * 35.10355 * 19 18 3 30 30 H 1.08992 * 109.47078 * 155.10798 * 19 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2096 0.0000 4 6 2.4729 1.8928 -1.0948 5 6 2.3465 1.4423 -2.5273 6 1 1.8502 0.4725 -2.5608 7 6 1.5223 2.4645 -3.3126 8 6 3.7184 1.3258 -3.1401 9 1 4.5942 1.5547 -2.5510 10 6 3.8554 0.9271 -4.4528 11 7 2.7890 0.6479 -5.1701 12 14 5.5559 0.7834 -5.2126 13 1 6.5817 1.1500 -4.2033 14 1 5.7811 -0.6142 -5.6613 15 1 5.6568 1.6994 -6.3771 16 6 3.0534 3.0864 -0.6550 17 7 2.9717 3.1260 0.6501 18 7 2.3403 1.9549 1.0880 19 6 2.0517 1.6001 2.4798 20 1 -0.3634 0.5357 0.8769 21 1 -0.3633 0.4917 -0.9025 22 1 -0.3634 -1.0273 0.0253 23 1 1.4313 2.1388 -4.3489 24 1 0.5300 2.5488 -2.8694 25 1 2.0187 3.4344 -3.2791 26 1 2.8855 0.3671 -6.0935 27 1 3.4901 3.8472 -1.2850 28 1 1.0323 1.8970 2.7264 29 1 2.1580 0.5231 2.6098 30 1 2.7498 2.1163 3.1386 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259958731.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:48 Heat of formation + Delta-G solvation = 40.535109 kcal Electronic energy + Delta-G solvation = -14101.536175 eV Core-core repulsion = 11706.459367 eV Total energy + Delta-G solvation = -2395.076807 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.71739 -37.40602 -34.52836 -32.43577 -30.60207 -28.48786 -26.34509 -25.83432 -24.98541 -21.68019 -20.37995 -19.23284 -17.11448 -16.16796 -15.63862 -15.06326 -14.64161 -14.19157 -13.93211 -13.12192 -12.97224 -12.56429 -12.34655 -12.20449 -11.46630 -11.34232 -10.93654 -10.77009 -10.63170 -10.27896 -10.05894 -9.57302 -9.43217 -8.86943 -8.63117 -8.26357 -7.38288 -5.90467 -3.95273 2.23255 2.89837 3.35633 3.43211 3.46845 3.54149 4.22336 4.52861 4.96508 5.32367 5.35740 5.40442 5.55071 5.57822 5.70774 5.80443 6.31693 6.37710 6.73373 6.83939 6.97771 7.11228 7.34895 7.47343 7.80604 8.03312 8.10009 8.21830 8.33455 8.55377 9.07307 9.68415 11.15418 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.038612 B = 0.009742 C = 0.008957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.992395 B = 2873.563531 C = 3125.385042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.302 6.302 3 C 0.211 3.789 4 C -0.167 4.167 5 C 0.108 3.892 6 H 0.034 0.966 7 C -0.129 4.129 8 C -0.498 4.498 9 H 0.056 0.944 10 C 0.060 3.940 11 N -0.893 5.893 12 Si 0.890 3.110 13 H -0.273 1.273 14 H -0.286 1.286 15 H -0.285 1.285 16 C 0.063 3.937 17 N -0.299 5.299 18 N -0.398 5.398 19 C 0.107 3.893 20 H 0.037 0.963 21 H 0.055 0.945 22 H 0.095 0.905 23 H 0.084 0.916 24 H 0.003 0.997 25 H 0.027 0.973 26 H 0.258 0.742 27 H 0.183 0.817 28 H 0.062 0.938 29 H 0.079 0.921 30 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.467 0.845 10.168 11.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.212 6.212 3 C 0.046 3.954 4 C -0.178 4.178 5 C 0.088 3.912 6 H 0.052 0.948 7 C -0.187 4.187 8 C -0.536 4.536 9 H 0.074 0.926 10 C -0.141 4.141 11 N -0.533 5.533 12 Si 0.718 3.282 13 H -0.198 1.198 14 H -0.212 1.212 15 H -0.211 1.211 16 C -0.121 4.121 17 N -0.124 5.124 18 N -0.192 5.192 19 C -0.035 4.035 20 H 0.056 0.944 21 H 0.074 0.926 22 H 0.113 0.887 23 H 0.103 0.897 24 H 0.022 0.978 25 H 0.046 0.954 26 H 0.068 0.932 27 H 0.200 0.800 28 H 0.080 0.920 29 H 0.098 0.902 30 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -4.245 1.140 11.140 11.976 hybrid contribution 0.531 -0.513 -1.030 1.267 sum -3.714 0.627 10.111 10.790 Atomic orbital electron populations 1.23046 0.79434 1.03012 1.00767 1.86125 1.19778 1.22080 1.93210 1.18840 1.02451 0.87003 0.87074 1.20762 1.05220 0.94642 0.97222 1.17222 0.96163 0.94656 0.83116 0.94782 1.21762 0.95230 0.98285 1.03421 1.21171 0.91879 1.44513 0.96054 0.92590 1.24945 0.96476 0.95457 0.97201 1.69894 1.27884 1.46714 1.08764 0.86560 0.84887 0.77552 0.79157 1.19803 1.21183 1.21110 1.23570 0.98874 0.98523 0.91139 1.77273 1.19793 1.01702 1.13619 1.48719 1.49213 1.15534 1.05713 1.21619 1.01277 1.01393 0.79223 0.94420 0.92585 0.88701 0.89717 0.97797 0.95372 0.93187 0.80009 0.91994 0.90240 0.89701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.13 101.05 1.12 1.61 16 2 O -0.30 -5.88 10.24 -19.00 -0.19 -6.08 16 3 C 0.21 4.42 6.94 -16.92 -0.12 4.30 16 4 C -0.17 -3.84 4.76 -104.85 -0.50 -4.34 16 5 C 0.11 2.78 2.67 -92.92 -0.25 2.53 16 6 H 0.03 0.96 7.89 -51.93 -0.41 0.55 16 7 C -0.13 -3.14 8.86 37.16 0.33 -2.81 16 8 C -0.50 -13.88 8.42 -34.44 -0.29 -14.17 16 9 H 0.06 1.58 7.73 -52.48 -0.41 1.17 16 10 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 11 N -0.89 -25.60 11.32 55.43 0.63 -24.98 16 12 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 13 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 14 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 15 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 16 C 0.06 1.34 11.52 -17.39 -0.20 1.14 16 17 N -0.30 -6.02 12.57 30.61 0.38 -5.63 16 18 N -0.40 -7.44 4.02 -68.28 -0.27 -7.71 16 19 C 0.11 1.39 11.42 59.85 0.68 2.07 16 20 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 21 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 22 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 23 H 0.08 2.25 6.07 -51.93 -0.32 1.93 16 24 H 0.00 0.07 8.14 -51.93 -0.42 -0.36 16 25 H 0.03 0.64 8.02 -51.93 -0.42 0.22 16 26 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 27 H 0.18 3.50 8.06 -52.49 -0.42 3.07 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 263.09 15.07 3.96 3.96 Total: -1.00 -31.41 263.09 -3.89 -35.29 By element: Atomic # 1 Polarization: 0.73 SS G_CDS: -4.06 Total: -3.33 kcal Atomic # 6 Polarization: -8.79 SS G_CDS: 0.69 Total: -8.10 kcal Atomic # 7 Polarization: -39.06 SS G_CDS: 0.74 Total: -38.32 kcal Atomic # 8 Polarization: -5.88 SS G_CDS: -0.19 Total: -6.08 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -31.41 -3.89 -35.29 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259958731.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.830 kcal (2) G-P(sol) polarization free energy of solvation -31.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds