Wall clock time and date at job start Mon Mar 30 2020 02:25:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35762 * 117.00338 * 2 1 4 4 C 1.35945 * 126.19637 * 266.30589 * 3 2 1 5 5 C 1.50702 * 126.08061 * 0.02562 * 4 3 2 6 6 H 1.08999 * 109.46935 * 0.20203 * 5 4 3 7 7 C 1.52999 * 109.47359 * 120.20758 * 5 4 3 8 8 C 1.50697 * 109.46651 * 240.20880 * 5 4 3 9 9 H 1.08003 * 120.00494 * 0.02562 * 8 5 4 10 10 C 1.37880 * 119.99810 * 180.02562 * 8 5 4 11 11 N 1.31517 * 120.00251 * 359.97438 * 10 8 5 12 12 Si 1.86803 * 119.99949 * 179.97438 * 10 8 5 13 13 H 1.48495 * 109.47472 * 0.02562 * 12 10 8 14 14 H 1.48504 * 109.46959 * 120.00250 * 12 10 8 15 15 H 1.48505 * 109.46997 * 239.99605 * 12 10 8 16 16 C 1.39818 * 107.83467 * 180.15783 * 4 3 2 17 17 N 1.30831 * 108.28393 * 359.60517 * 16 4 3 18 18 N 1.35135 * 126.19038 * 86.02691 * 3 2 1 19 19 C 1.46506 * 126.03814 * 0.02562 * 18 3 2 20 20 H 1.08999 * 109.47602 * 301.41895 * 1 2 3 21 21 H 1.09004 * 109.46714 * 61.41805 * 1 2 3 22 22 H 1.09000 * 109.47318 * 181.40801 * 1 2 3 23 23 H 1.08998 * 109.46882 * 179.97438 * 7 5 4 24 24 H 1.09002 * 109.47067 * 300.00171 * 7 5 4 25 25 H 1.09005 * 109.46917 * 59.99646 * 7 5 4 26 26 H 0.96996 * 120.00155 * 180.02562 * 11 10 8 27 27 H 1.08001 * 125.85510 * 179.86474 * 16 4 3 28 28 H 1.08997 * 109.46452 * 275.10400 * 19 18 3 29 29 H 1.08999 * 109.47147 * 35.10355 * 19 18 3 30 30 H 1.08992 * 109.47078 * 155.10798 * 19 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2096 0.0000 4 6 2.4729 1.8928 -1.0948 5 6 2.3465 1.4423 -2.5273 6 1 1.8502 0.4725 -2.5608 7 6 1.5223 2.4645 -3.3126 8 6 3.7184 1.3258 -3.1401 9 1 4.5942 1.5547 -2.5510 10 6 3.8554 0.9271 -4.4528 11 7 2.7890 0.6479 -5.1701 12 14 5.5559 0.7834 -5.2126 13 1 6.5817 1.1500 -4.2033 14 1 5.7811 -0.6142 -5.6613 15 1 5.6568 1.6994 -6.3771 16 6 3.0534 3.0864 -0.6550 17 7 2.9717 3.1260 0.6501 18 7 2.3403 1.9549 1.0880 19 6 2.0517 1.6001 2.4798 20 1 -0.3634 0.5357 0.8769 21 1 -0.3633 0.4917 -0.9025 22 1 -0.3634 -1.0273 0.0253 23 1 1.4313 2.1388 -4.3489 24 1 0.5300 2.5488 -2.8694 25 1 2.0187 3.4344 -3.2791 26 1 2.8855 0.3671 -6.0935 27 1 3.4901 3.8472 -1.2850 28 1 1.0323 1.8970 2.7264 29 1 2.1580 0.5231 2.6098 30 1 2.7498 2.1163 3.1386 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259958731.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:47 Heat of formation + Delta-G solvation = 19.288681 kcal Electronic energy + Delta-G solvation = -14102.457489 eV Core-core repulsion = 11706.459367 eV Total energy + Delta-G solvation = -2395.998122 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.26309 -38.85946 -36.43655 -34.04375 -32.45287 -29.99574 -27.68168 -27.26936 -27.04712 -23.48766 -21.87940 -20.93414 -18.61539 -18.15989 -17.12166 -16.60936 -16.50692 -15.46529 -15.42402 -14.69699 -14.56083 -14.44167 -13.66838 -13.48271 -13.25651 -12.83183 -12.73261 -12.67842 -12.31006 -12.18454 -12.03106 -11.32293 -11.13139 -10.86824 -10.38520 -10.10145 -9.04557 -8.01909 -6.14546 0.71519 1.43624 1.45559 1.49615 1.57255 1.89322 2.50039 2.83061 3.24892 3.69580 4.25699 4.38678 4.39541 4.43415 4.61800 4.65893 4.68745 4.77237 4.98752 5.04946 5.26146 5.34041 5.47551 5.67397 5.77491 6.01319 6.16880 6.43956 6.63149 6.78042 6.93657 7.52443 9.02491 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.038612 B = 0.009742 C = 0.008957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.992395 B = 2873.563531 C = 3125.385042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.322 6.322 3 C 0.219 3.781 4 C -0.210 4.210 5 C 0.115 3.885 6 H -0.001 1.001 7 C -0.117 4.117 8 C -0.514 4.514 9 H 0.047 0.953 10 C 0.014 3.986 11 N -0.918 5.918 12 Si 0.952 3.048 13 H -0.271 1.271 14 H -0.283 1.283 15 H -0.277 1.277 16 C 0.057 3.943 17 N -0.301 5.301 18 N -0.388 5.388 19 C 0.094 3.906 20 H 0.064 0.936 21 H 0.039 0.961 22 H 0.125 0.875 23 H 0.059 0.941 24 H 0.019 0.981 25 H 0.034 0.966 26 H 0.260 0.740 27 H 0.191 0.809 28 H 0.089 0.911 29 H 0.094 0.906 30 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.447 0.862 11.604 12.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.232 6.232 3 C 0.052 3.948 4 C -0.222 4.222 5 C 0.095 3.905 6 H 0.017 0.983 7 C -0.175 4.175 8 C -0.552 4.552 9 H 0.065 0.935 10 C -0.184 4.184 11 N -0.558 5.558 12 Si 0.778 3.222 13 H -0.195 1.195 14 H -0.209 1.209 15 H -0.203 1.203 16 C -0.127 4.127 17 N -0.127 5.127 18 N -0.182 5.182 19 C -0.046 4.046 20 H 0.083 0.917 21 H 0.058 0.942 22 H 0.143 0.857 23 H 0.078 0.922 24 H 0.038 0.962 25 H 0.053 0.947 26 H 0.070 0.930 27 H 0.208 0.792 28 H 0.107 0.893 29 H 0.112 0.888 30 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -4.235 1.165 12.608 13.351 hybrid contribution 0.435 -0.592 -1.359 1.545 sum -3.800 0.573 11.249 11.887 Atomic orbital electron populations 1.23316 0.76704 1.05328 1.01237 1.86069 1.22339 1.21447 1.93326 1.18843 1.01606 0.86898 0.87449 1.20550 1.08562 0.96577 0.96480 1.16958 0.94897 0.93242 0.85408 0.98303 1.21583 0.96072 0.98110 1.01731 1.21420 0.92678 1.44696 0.96434 0.93509 1.25676 0.99963 0.95163 0.97643 1.70014 1.29650 1.47128 1.09017 0.85596 0.80656 0.77567 0.78366 1.19548 1.20906 1.20252 1.23641 0.99108 0.98268 0.91659 1.77226 1.20026 1.02524 1.12937 1.49082 1.47538 1.14390 1.07223 1.22104 1.03424 1.02736 0.76298 0.91725 0.94168 0.85676 0.92236 0.96196 0.94731 0.93033 0.79185 0.89254 0.88766 0.87926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.78 11.13 113.37 1.26 2.05 16 2 O -0.32 -12.16 10.24 -90.89 -0.93 -13.09 16 3 C 0.22 8.97 6.94 83.65 0.58 9.55 16 4 C -0.21 -9.69 4.76 -20.01 -0.10 -9.78 16 5 C 0.11 6.03 2.67 -12.29 -0.03 6.00 16 6 H 0.00 -0.07 7.89 -2.39 -0.02 -0.09 16 7 C -0.12 -5.79 8.86 71.98 0.64 -5.15 16 8 C -0.51 -29.17 8.42 25.60 0.22 -28.96 16 9 H 0.05 2.67 7.73 -2.91 -0.02 2.65 16 10 C 0.01 0.77 5.30 84.65 0.45 1.21 16 11 N -0.92 -53.47 11.32 21.45 0.24 -53.23 16 12 Si 0.95 44.54 29.54 68.60 2.03 46.56 16 13 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 14 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 15 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 16 C 0.06 2.38 11.52 85.22 0.98 3.36 16 17 N -0.30 -11.68 12.57 -57.06 -0.72 -12.40 16 18 N -0.39 -13.71 4.02 -481.26 -1.93 -15.64 16 19 C 0.09 2.12 11.42 127.77 1.46 3.58 16 20 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 21 H 0.04 1.22 8.14 -2.38 -0.02 1.20 16 22 H 0.13 2.61 8.14 -2.39 -0.02 2.59 16 23 H 0.06 3.23 6.07 -2.39 -0.01 3.21 16 24 H 0.02 0.86 8.14 -2.39 -0.02 0.85 16 25 H 0.03 1.60 8.02 -2.38 -0.02 1.58 16 26 H 0.26 14.36 8.31 -92.71 -0.77 13.58 16 27 H 0.19 7.31 8.06 -2.91 -0.02 7.28 16 28 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -67.48 263.09 5.26 -62.22 By element: Atomic # 1 Polarization: 2.61 SS G_CDS: 1.12 Total: 3.72 kcal Atomic # 6 Polarization: -23.60 SS G_CDS: 5.46 Total: -18.15 kcal Atomic # 7 Polarization: -78.86 SS G_CDS: -2.41 Total: -81.27 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: -0.93 Total: -13.09 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.56 kcal Total: -67.48 5.26 -62.22 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259958731.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.509 kcal (2) G-P(sol) polarization free energy of solvation -67.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds