Wall clock time and date at job start Mon Mar 30 2020 02:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53009 * 109.46900 * 2 1 4 4 N 1.46497 * 109.47494 * 119.99855 * 2 1 3 5 5 C 1.35312 * 125.87066 * 275.00543 * 4 2 1 6 6 C 1.35346 * 106.17696 * 180.02562 * 5 4 2 7 7 C 1.50707 * 126.75098 * 180.02562 * 6 5 4 8 8 H 1.08992 * 109.47349 * 4.99616 * 7 6 5 9 9 N 1.46895 * 109.46790 * 244.99412 * 7 6 5 10 10 C 1.50695 * 109.47014 * 124.99757 * 7 6 5 11 11 H 1.08004 * 120.00546 * 0.27454 * 10 7 6 12 12 C 1.37885 * 119.99721 * 179.97438 * 10 7 6 13 13 N 1.31514 * 120.00035 * 0.02562 * 12 10 7 14 14 Si 1.86803 * 119.99853 * 179.97438 * 12 10 7 15 15 H 1.48500 * 109.47093 * 60.00328 * 14 12 10 16 16 H 1.48495 * 109.47002 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47239 * 300.00048 * 14 12 10 18 18 N 1.33771 * 106.49978 * 0.25719 * 6 5 4 19 19 N 1.28643 * 108.88055 * 359.57036 * 18 6 5 20 20 H 1.08996 * 109.47534 * 299.99862 * 1 2 3 21 21 H 1.09000 * 109.47302 * 60.00367 * 1 2 3 22 22 H 1.09001 * 109.47142 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47339 * 240.00448 * 2 1 3 24 24 H 1.08996 * 109.46767 * 180.02562 * 3 2 1 25 25 H 1.09000 * 109.46843 * 299.99914 * 3 2 1 26 26 H 1.09004 * 109.46758 * 60.00093 * 3 2 1 27 27 H 1.08006 * 126.91253 * 0.05729 * 5 4 2 28 28 H 1.00905 * 111.00362 * 176.04331 * 9 7 6 29 29 H 1.00902 * 111.00742 * 300.00069 * 9 7 6 30 30 H 0.97000 * 119.99706 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0184 -0.6905 1.1961 5 6 2.1925 -0.1343 2.4173 6 6 2.6554 -1.1216 3.2189 7 6 3.0053 -1.0072 4.6803 8 1 2.7462 -0.0111 5.0390 9 7 4.4461 -1.2321 4.8578 10 6 2.2356 -2.0392 5.4634 11 1 1.5638 -2.7138 4.9534 12 6 2.3935 -2.1263 6.8304 13 7 3.2156 -1.3084 7.4508 14 14 1.4388 -3.4051 7.8014 15 1 1.7909 -4.7623 7.3123 16 1 1.7837 -3.2924 9.2413 17 1 -0.0176 -3.1768 7.6223 18 7 2.7462 -2.2179 2.4577 19 7 2.3561 -1.9306 1.2659 20 1 -0.3634 0.5138 0.8899 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 3.1299 1.4426 -0.0005 25 1 1.6766 1.9564 -0.8900 26 1 1.6766 1.9564 0.8900 27 1 2.0003 0.8913 2.6963 28 1 4.7173 -1.0973 5.8204 29 1 4.7117 -2.1495 4.5325 30 1 3.3264 -1.3695 8.4125 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259973826.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:14 Heat of formation + Delta-G solvation = 86.685951 kcal Electronic energy + Delta-G solvation = -13826.124578 eV Core-core repulsion = 11465.341772 eV Total energy + Delta-G solvation = -2360.782806 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.45657 -36.31001 -34.59469 -31.55640 -30.65451 -29.55041 -27.50593 -25.90246 -23.41193 -22.94378 -20.37487 -19.68918 -16.79204 -16.30761 -15.63541 -14.92050 -14.51695 -14.14594 -13.91767 -13.26621 -12.85606 -12.67034 -12.47271 -11.96754 -11.70933 -11.58714 -11.25687 -10.98411 -10.84423 -10.64609 -10.11530 -9.78971 -9.75131 -9.28648 -8.56692 -8.29650 -7.11886 -6.01393 -4.14627 2.33541 2.85798 3.31840 3.35494 3.39613 3.58423 4.40481 4.43412 4.69722 4.86282 5.14214 5.22954 5.28299 5.47330 5.50512 5.55187 5.81233 5.89873 5.95339 6.16787 6.43817 6.75291 7.12787 7.30385 7.62110 7.85909 8.19019 8.75751 9.02350 9.22491 9.40042 9.55870 10.97427 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.048176 B = 0.007929 C = 0.007539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.060876 B = 3530.429242 C = 3713.275102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.142 3.858 3 C -0.163 4.163 4 N -0.298 5.298 5 C -0.072 4.072 6 C 0.043 3.957 7 C 0.285 3.715 8 H 0.051 0.949 9 N -0.849 5.849 10 C -0.534 4.534 11 H 0.057 0.943 12 C 0.064 3.936 13 N -0.899 5.899 14 Si 0.898 3.102 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.278 1.278 18 N -0.260 5.260 19 N -0.114 5.114 20 H 0.066 0.934 21 H 0.078 0.922 22 H 0.066 0.934 23 H 0.106 0.894 24 H 0.068 0.932 25 H 0.080 0.920 26 H 0.070 0.930 27 H 0.178 0.822 28 H 0.356 0.644 29 H 0.319 0.681 30 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.953 6.313 -12.107 14.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.039 3.961 3 C -0.221 4.221 4 N -0.095 5.095 5 C -0.221 4.221 6 C -0.095 4.095 7 C 0.174 3.826 8 H 0.069 0.931 9 N -0.379 5.379 10 C -0.575 4.575 11 H 0.075 0.925 12 C -0.137 4.137 13 N -0.538 5.538 14 Si 0.726 3.274 15 H -0.201 1.201 16 H -0.213 1.213 17 H -0.203 1.203 18 N -0.127 5.127 19 N -0.092 5.092 20 H 0.085 0.915 21 H 0.096 0.904 22 H 0.085 0.915 23 H 0.124 0.876 24 H 0.087 0.913 25 H 0.099 0.901 26 H 0.089 0.911 27 H 0.195 0.805 28 H 0.172 0.828 29 H 0.128 0.872 30 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.645 5.671 -13.209 14.830 hybrid contribution -1.103 -0.355 1.712 2.068 sum -4.749 5.317 -11.497 13.528 Atomic orbital electron populations 1.22208 0.93135 1.03579 1.03300 1.21462 0.95404 0.93514 0.85690 1.22179 1.02559 0.93701 1.03708 1.47346 1.44127 1.08553 1.09435 1.23184 1.11755 1.01871 0.85307 1.22721 0.99685 0.87994 0.99082 1.17315 0.86982 0.97196 0.81143 0.93078 1.59393 1.16409 1.33724 1.28387 1.21791 1.25935 1.17576 0.92163 0.92487 1.24985 0.95327 0.95886 0.97540 1.69729 1.36856 1.37516 1.09749 0.86551 0.80303 0.82018 0.78514 1.20147 1.21251 1.20334 1.75008 1.16324 1.25212 0.96140 1.78171 1.17386 0.96232 1.17421 0.91459 0.90350 0.91465 0.87618 0.91278 0.90085 0.91082 0.80532 0.82769 0.87189 0.92497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.62 9.52 37.16 0.35 -1.27 16 2 C 0.14 1.63 3.85 -67.93 -0.26 1.37 16 3 C -0.16 -1.46 8.83 37.16 0.33 -1.13 16 4 N -0.30 -5.16 3.25 -54.76 -0.18 -5.34 16 5 C -0.07 -1.36 10.61 -17.05 -0.18 -1.54 16 6 C 0.04 1.02 5.99 -82.78 -0.50 0.53 16 7 C 0.29 7.41 3.21 -70.02 -0.22 7.19 16 8 H 0.05 1.38 8.12 -51.93 -0.42 0.95 16 9 N -0.85 -21.47 9.18 -6.65 -0.06 -21.54 16 10 C -0.53 -15.09 8.71 -34.44 -0.30 -15.39 16 11 H 0.06 1.68 7.74 -52.48 -0.41 1.27 16 12 C 0.06 1.78 5.38 -17.82 -0.10 1.69 16 13 N -0.90 -25.14 11.54 55.43 0.64 -24.50 16 14 Si 0.90 21.75 29.54 -169.99 -5.02 16.73 16 15 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 16 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 17 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 18 N -0.26 -6.32 12.40 33.29 0.41 -5.91 16 19 N -0.11 -2.41 13.17 60.35 0.79 -1.62 16 20 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 21 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 22 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 23 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 24 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.07 0.64 7.17 -51.93 -0.37 0.26 16 27 H 0.18 2.77 7.30 -52.48 -0.38 2.39 16 28 H 0.36 9.36 7.08 -39.29 -0.28 9.08 16 29 H 0.32 8.13 8.98 -39.29 -0.35 7.78 16 30 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 260.04 15.07 3.92 3.92 Total: -1.00 -31.35 260.04 -4.26 -35.61 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -3.89 Total: 11.21 kcal Atomic # 6 Polarization: -7.68 SS G_CDS: -0.88 Total: -8.56 kcal Atomic # 7 Polarization: -60.52 SS G_CDS: 1.61 Total: -58.91 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -31.35 -4.26 -35.61 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259973826.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.294 kcal (2) G-P(sol) polarization free energy of solvation -31.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds