Wall clock time and date at job start Mon Mar 30 2020 02:43:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 N 1.46506 * 109.47289 * 240.00314 * 2 1 3 5 5 C 1.35319 * 125.86676 * 84.99561 * 4 2 1 6 6 C 1.35353 * 106.17252 * 180.02562 * 5 4 2 7 7 C 1.50701 * 126.74897 * 179.97438 * 6 5 4 8 8 H 1.08995 * 109.47004 * 245.00061 * 7 6 5 9 9 N 1.46894 * 109.46967 * 5.00456 * 7 6 5 10 10 C 1.50697 * 109.46578 * 125.00416 * 7 6 5 11 11 H 1.08003 * 120.00490 * 359.97438 * 10 7 6 12 12 C 1.37883 * 119.99762 * 179.97438 * 10 7 6 13 13 N 1.31519 * 119.99603 * 0.02562 * 12 10 7 14 14 Si 1.86793 * 120.00158 * 179.97438 * 12 10 7 15 15 H 1.48505 * 109.47212 * 90.00132 * 14 12 10 16 16 H 1.48503 * 109.47161 * 210.00241 * 14 12 10 17 17 H 1.48507 * 109.47418 * 329.99984 * 14 12 10 18 18 N 1.33771 * 106.49777 * 0.02562 * 6 5 4 19 19 N 1.28641 * 108.88552 * 359.72911 * 18 6 5 20 20 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 21 21 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 23 23 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 24 24 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 25 25 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 26 26 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 27 27 H 1.07992 * 126.91268 * 359.97438 * 5 4 2 28 28 H 1.00904 * 111.00158 * 296.04085 * 9 7 6 29 29 H 1.00898 * 111.00584 * 59.99701 * 9 7 6 30 30 H 0.96995 * 119.99415 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1925 -0.1341 -2.4174 6 6 2.6543 -1.1218 -3.2194 7 6 3.0037 -1.0074 -4.6809 8 1 2.3228 -1.6248 -5.2666 9 7 2.8821 0.3937 -5.1051 10 6 4.4193 -1.4767 -4.8970 11 1 5.0073 -1.8228 -4.0598 12 6 4.9639 -1.4643 -6.1637 13 7 4.2480 -1.0424 -7.1830 14 14 6.7188 -2.0454 -6.4316 15 1 6.7198 -3.5031 -6.7150 16 1 7.3112 -1.3170 -7.5822 17 1 7.5207 -1.7779 -5.2106 18 7 2.7384 -2.2198 -2.4599 19 7 2.3596 -1.9297 -1.2652 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5139 -0.8900 23 1 1.8934 -0.5138 0.8899 24 1 1.6767 1.9563 0.8900 25 1 3.1300 1.4425 -0.0005 26 1 1.6766 1.9564 -0.8899 27 1 2.0007 0.8914 -2.6961 28 1 1.9277 0.7126 -5.0305 29 1 3.5039 0.9869 -4.5764 30 1 4.6309 -1.0340 -8.0741 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259973827.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:16 Heat of formation + Delta-G solvation = 95.990370 kcal Electronic energy + Delta-G solvation = -13864.351756 eV Core-core repulsion = 11503.972420 eV Total energy + Delta-G solvation = -2360.379336 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.56593 -36.38743 -34.64370 -31.64026 -30.91886 -29.30537 -27.57266 -26.16266 -23.51740 -22.72219 -20.16617 -20.00309 -16.94051 -16.44212 -15.65459 -14.77226 -14.52468 -14.34054 -14.00685 -13.34410 -13.15243 -12.73187 -12.54592 -12.14423 -11.72877 -11.54817 -11.30138 -11.12012 -10.75953 -10.67349 -10.10832 -9.71137 -9.45468 -9.20036 -8.42008 -8.12333 -7.22775 -5.79655 -3.91358 2.21978 2.76619 3.42099 3.44372 3.48466 3.54890 4.33599 4.58446 4.61504 4.78604 5.02119 5.20362 5.36942 5.39117 5.44876 5.47694 5.73117 5.79125 5.86126 6.01874 6.19283 6.51116 7.07782 7.19793 7.44184 8.02630 8.25616 8.60400 8.99437 9.19836 9.31770 9.75646 11.25575 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.053612 B = 0.007845 C = 0.007543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.142016 B = 3568.375724 C = 3711.317107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.140 3.860 3 C -0.163 4.163 4 N -0.296 5.296 5 C -0.086 4.086 6 C 0.001 3.999 7 C 0.295 3.705 8 H 0.057 0.943 9 N -0.804 5.804 10 C -0.519 4.519 11 H 0.055 0.945 12 C 0.082 3.918 13 N -0.852 5.852 14 Si 0.887 3.113 15 H -0.281 1.281 16 H -0.288 1.288 17 H -0.276 1.276 18 N -0.260 5.260 19 N -0.111 5.111 20 H 0.079 0.921 21 H 0.066 0.934 22 H 0.065 0.935 23 H 0.106 0.894 24 H 0.081 0.919 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.174 0.826 28 H 0.297 0.703 29 H 0.319 0.681 30 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.905 6.858 12.837 16.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.038 3.962 3 C -0.222 4.222 4 N -0.093 5.093 5 C -0.235 4.235 6 C -0.140 4.140 7 C 0.184 3.816 8 H 0.074 0.926 9 N -0.330 5.330 10 C -0.558 4.558 11 H 0.074 0.926 12 C -0.124 4.124 13 N -0.487 5.487 14 Si 0.715 3.285 15 H -0.207 1.207 16 H -0.214 1.214 17 H -0.202 1.202 18 N -0.126 5.126 19 N -0.089 5.089 20 H 0.098 0.902 21 H 0.086 0.914 22 H 0.084 0.916 23 H 0.124 0.876 24 H 0.100 0.900 25 H 0.087 0.913 26 H 0.088 0.912 27 H 0.191 0.809 28 H 0.108 0.892 29 H 0.131 0.869 30 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -6.526 5.313 12.695 15.230 hybrid contribution 0.504 1.041 0.417 1.229 sum -6.022 6.354 13.111 15.765 Atomic orbital electron populations 1.22200 0.93049 1.03551 1.03306 1.21484 0.95426 0.93548 0.85730 1.22180 1.02620 0.93663 1.03702 1.47377 1.43855 1.08621 1.09436 1.23074 1.12631 1.01940 0.85836 1.24443 0.99033 0.88429 1.02056 1.17601 0.97831 0.87461 0.78745 0.92552 1.59237 1.07245 1.03676 1.62813 1.20774 0.97106 1.44368 0.93540 0.92641 1.24927 0.97097 0.94341 0.96082 1.70102 1.35749 1.43957 0.98902 0.86707 0.85513 0.78772 0.77528 1.20689 1.21374 1.20154 1.75063 1.16145 1.25445 0.95975 1.78192 1.17041 0.96200 1.17481 0.90248 0.91450 0.91567 0.87550 0.89982 0.91258 0.91190 0.80861 0.89229 0.86933 0.93518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.49 9.52 37.16 0.35 -1.13 16 2 C 0.14 1.56 3.85 -67.93 -0.26 1.30 16 3 C -0.16 -1.42 8.83 37.16 0.33 -1.09 16 4 N -0.30 -4.97 3.25 -54.76 -0.18 -5.15 16 5 C -0.09 -1.55 9.73 -17.04 -0.17 -1.71 16 6 C 0.00 0.02 6.37 -82.78 -0.53 -0.51 16 7 C 0.30 7.56 3.16 -70.02 -0.22 7.34 16 8 H 0.06 1.60 8.14 -51.93 -0.42 1.18 16 9 N -0.80 -18.27 8.02 -6.66 -0.05 -18.33 16 10 C -0.52 -14.86 8.70 -34.44 -0.30 -15.16 16 11 H 0.06 1.65 7.74 -52.48 -0.41 1.25 16 12 C 0.08 2.34 5.39 -17.82 -0.10 2.24 16 13 N -0.85 -25.09 12.77 55.43 0.71 -24.38 16 14 Si 0.89 22.12 29.54 -169.99 -5.02 17.10 16 15 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 16 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 17 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 18 N -0.26 -6.28 12.40 33.29 0.41 -5.86 16 19 N -0.11 -2.31 13.17 60.35 0.79 -1.52 16 20 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 21 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 22 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.11 1.09 8.14 -51.93 -0.42 0.67 16 24 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.07 0.60 7.17 -51.93 -0.37 0.23 16 27 H 0.17 2.54 7.01 -52.49 -0.37 2.17 16 28 H 0.30 5.79 8.75 -39.29 -0.34 5.45 16 29 H 0.32 6.85 8.80 -39.29 -0.35 6.51 16 30 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 260.79 15.07 3.93 3.93 Total: -1.00 -33.29 260.79 -4.23 -37.52 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -3.93 Total: 5.44 kcal Atomic # 6 Polarization: -7.85 SS G_CDS: -0.89 Total: -8.74 kcal Atomic # 7 Polarization: -56.92 SS G_CDS: 1.68 Total: -55.24 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -33.29 -4.23 -37.52 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259973827.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.508 kcal (2) G-P(sol) polarization free energy of solvation -33.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds