Wall clock time and date at job start Mon Mar 30 2020 02:43:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 N 1.46506 * 109.47289 * 240.00314 * 2 1 3 5 5 C 1.35319 * 125.86676 * 84.99561 * 4 2 1 6 6 C 1.35353 * 106.17252 * 180.02562 * 5 4 2 7 7 C 1.50701 * 126.74897 * 179.97438 * 6 5 4 8 8 H 1.08995 * 109.47004 * 245.00061 * 7 6 5 9 9 N 1.46894 * 109.46967 * 5.00456 * 7 6 5 10 10 C 1.50697 * 109.46578 * 125.00416 * 7 6 5 11 11 H 1.08003 * 120.00490 * 359.97438 * 10 7 6 12 12 C 1.37883 * 119.99762 * 179.97438 * 10 7 6 13 13 N 1.31519 * 119.99603 * 0.02562 * 12 10 7 14 14 Si 1.86793 * 120.00158 * 179.97438 * 12 10 7 15 15 H 1.48505 * 109.47212 * 90.00132 * 14 12 10 16 16 H 1.48503 * 109.47161 * 210.00241 * 14 12 10 17 17 H 1.48507 * 109.47418 * 329.99984 * 14 12 10 18 18 N 1.33771 * 106.49777 * 0.02562 * 6 5 4 19 19 N 1.28641 * 108.88552 * 359.72911 * 18 6 5 20 20 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 21 21 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 23 23 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 24 24 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 25 25 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 26 26 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 27 27 H 1.07992 * 126.91268 * 359.97438 * 5 4 2 28 28 H 1.00904 * 111.00158 * 296.04085 * 9 7 6 29 29 H 1.00898 * 111.00584 * 59.99701 * 9 7 6 30 30 H 0.96995 * 119.99415 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1925 -0.1341 -2.4174 6 6 2.6543 -1.1218 -3.2194 7 6 3.0037 -1.0074 -4.6809 8 1 2.3228 -1.6248 -5.2666 9 7 2.8821 0.3937 -5.1051 10 6 4.4193 -1.4767 -4.8970 11 1 5.0073 -1.8228 -4.0598 12 6 4.9639 -1.4643 -6.1637 13 7 4.2480 -1.0424 -7.1830 14 14 6.7188 -2.0454 -6.4316 15 1 6.7198 -3.5031 -6.7150 16 1 7.3112 -1.3170 -7.5822 17 1 7.5207 -1.7779 -5.2106 18 7 2.7384 -2.2198 -2.4599 19 7 2.3596 -1.9297 -1.2652 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5139 -0.8900 23 1 1.8934 -0.5138 0.8899 24 1 1.6767 1.9563 0.8900 25 1 3.1300 1.4425 -0.0005 26 1 1.6766 1.9564 -0.8899 27 1 2.0007 0.8914 -2.6961 28 1 1.9277 0.7126 -5.0305 29 1 3.5039 0.9869 -4.5764 30 1 4.6309 -1.0340 -8.0741 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259973827.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:16 Heat of formation + Delta-G solvation = 70.047601 kcal Electronic energy + Delta-G solvation = -13865.476719 eV Core-core repulsion = 11503.972420 eV Total energy + Delta-G solvation = -2361.504299 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -44.09816 -37.57488 -36.44263 -33.71494 -32.24409 -30.94325 -28.35637 -28.12275 -25.03786 -24.35504 -21.74683 -21.39294 -18.57485 -18.14153 -17.12418 -16.56278 -16.20914 -15.65494 -15.47799 -14.88881 -14.27170 -14.17201 -13.58838 -13.31706 -13.17538 -12.89762 -12.74503 -12.61842 -12.46196 -12.15695 -11.95867 -11.57009 -11.32852 -10.83016 -10.54888 -9.88149 -9.03744 -7.96864 -6.15390 0.75073 1.43462 1.44719 1.53661 1.57643 1.75721 2.50632 3.26251 3.44067 3.69723 3.82539 3.99832 4.16556 4.28070 4.47522 4.58632 4.62022 4.75651 4.77109 4.93914 5.14528 5.19359 5.35359 5.40818 5.79182 5.86805 6.21668 6.64484 7.07463 7.28818 7.54631 7.71958 9.07309 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.053612 B = 0.007845 C = 0.007543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.142016 B = 3568.375724 C = 3711.317107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.124 3.876 3 C -0.159 4.159 4 N -0.277 5.277 5 C -0.054 4.054 6 C -0.037 4.037 7 C 0.305 3.695 8 H 0.015 0.985 9 N -0.808 5.808 10 C -0.536 4.536 11 H 0.034 0.966 12 C 0.038 3.962 13 N -0.878 5.878 14 Si 0.947 3.053 15 H -0.280 1.280 16 H -0.277 1.277 17 H -0.277 1.277 18 N -0.311 5.311 19 N -0.127 5.127 20 H 0.118 0.882 21 H 0.049 0.951 22 H 0.065 0.935 23 H 0.116 0.884 24 H 0.119 0.881 25 H 0.055 0.945 26 H 0.075 0.925 27 H 0.213 0.787 28 H 0.319 0.681 29 H 0.328 0.672 30 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.287 8.796 14.326 18.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.025 3.975 3 C -0.217 4.217 4 N -0.074 5.074 5 C -0.205 4.205 6 C -0.178 4.178 7 C 0.193 3.807 8 H 0.032 0.968 9 N -0.336 5.336 10 C -0.575 4.575 11 H 0.053 0.947 12 C -0.166 4.166 13 N -0.514 5.514 14 Si 0.773 3.227 15 H -0.206 1.206 16 H -0.202 1.202 17 H -0.202 1.202 18 N -0.177 5.177 19 N -0.106 5.106 20 H 0.136 0.864 21 H 0.068 0.932 22 H 0.084 0.916 23 H 0.134 0.866 24 H 0.137 0.863 25 H 0.074 0.926 26 H 0.094 0.906 27 H 0.230 0.770 28 H 0.131 0.869 29 H 0.141 0.859 30 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -6.922 7.250 14.224 17.401 hybrid contribution 0.523 0.500 0.090 0.729 sum -6.398 7.750 14.314 17.490 Atomic orbital electron populations 1.22208 0.91052 1.03015 1.05222 1.22168 0.96985 0.94719 0.83658 1.22225 1.01800 0.91804 1.05858 1.47913 1.41261 1.07553 1.10661 1.23372 1.09524 1.02327 0.85298 1.24066 1.02257 0.90004 1.01493 1.17053 0.95229 0.88107 0.80317 0.96757 1.58924 1.08978 1.02460 1.63189 1.20970 0.98611 1.44768 0.93175 0.94717 1.25585 1.00721 0.94466 0.95796 1.70195 1.37222 1.44825 0.99147 0.85763 0.81116 0.78282 0.77506 1.20564 1.20175 1.20211 1.74971 1.18182 1.27184 0.97344 1.78062 1.17981 0.98212 1.16307 0.86385 0.93222 0.91581 0.86584 0.86298 0.92553 0.90614 0.77048 0.86922 0.85905 0.93368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.32 9.52 71.98 0.69 -1.63 16 2 C 0.12 2.37 3.85 44.99 0.17 2.54 16 3 C -0.16 -2.10 8.83 71.98 0.64 -1.46 16 4 N -0.28 -8.85 3.25 -327.17 -1.06 -9.92 16 5 C -0.05 -1.87 9.73 83.49 0.81 -1.06 16 6 C -0.04 -1.69 6.37 41.60 0.26 -1.43 16 7 C 0.31 16.01 3.16 43.42 0.14 16.15 16 8 H 0.01 0.87 8.14 -2.39 -0.02 0.85 16 9 N -0.81 -36.39 8.02 -174.97 -1.40 -37.79 16 10 C -0.54 -31.52 8.70 25.60 0.22 -31.29 16 11 H 0.03 2.13 7.74 -2.91 -0.02 2.11 16 12 C 0.04 2.19 5.39 84.66 0.46 2.65 16 13 N -0.88 -52.20 12.77 21.45 0.27 -51.93 16 14 Si 0.95 45.93 29.54 68.60 2.03 47.96 16 15 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 16 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 17 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 18 N -0.31 -15.44 12.40 -48.60 -0.60 -16.04 16 19 N -0.13 -5.32 13.17 37.02 0.49 -4.83 16 20 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 21 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 22 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 23 H 0.12 2.04 8.14 -2.39 -0.02 2.02 16 24 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 25 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.07 0.94 7.17 -2.39 -0.02 0.92 16 27 H 0.21 5.45 7.01 -2.91 -0.02 5.43 16 28 H 0.32 12.02 8.75 -89.69 -0.78 11.23 16 29 H 0.33 13.73 8.80 -89.70 -0.79 12.94 16 30 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 Total: -1.00 -74.58 260.79 2.68 -71.90 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: -0.42 Total: 16.20 kcal Atomic # 6 Polarization: -18.93 SS G_CDS: 3.39 Total: -15.54 kcal Atomic # 7 Polarization: -118.20 SS G_CDS: -2.31 Total: -120.51 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.96 kcal Total: -74.58 2.68 -71.90 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259973827.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.944 kcal (2) G-P(sol) polarization free energy of solvation -74.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds