Wall clock time and date at job start Mon Mar 30 2020 02:38:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.33241 * 125.52876 * 2 1 4 4 C 1.30838 * 109.82942 * 180.12568 * 3 2 1 5 5 C 1.50697 * 125.96157 * 179.86262 * 4 3 2 6 6 H 1.08996 * 109.47188 * 194.69219 * 5 4 3 7 7 N 1.46905 * 109.47125 * 314.68997 * 5 4 3 8 8 C 1.53001 * 109.47213 * 74.68841 * 5 4 3 9 9 C 1.50698 * 109.47176 * 174.99984 * 8 5 4 10 10 H 1.07997 * 119.99944 * 359.97438 * 9 8 5 11 11 C 1.37872 * 120.00026 * 180.02562 * 9 8 5 12 12 N 1.31510 * 120.00285 * 179.97438 * 11 9 8 13 13 Si 1.86799 * 120.00057 * 0.02562 * 11 9 8 14 14 H 1.48498 * 109.47612 * 89.99782 * 13 11 9 15 15 H 1.48505 * 109.47212 * 210.00085 * 13 11 9 16 16 H 1.48502 * 109.47147 * 329.99507 * 13 11 9 17 17 N 1.34429 * 108.07411 * 359.59960 * 4 3 2 18 18 C 1.46504 * 126.82166 * 180.20467 * 17 4 3 19 19 N 1.30720 * 125.52288 * 179.67245 * 2 1 3 20 20 H 1.08998 * 109.46761 * 270.30022 * 1 2 3 21 21 H 1.09005 * 109.46665 * 30.29466 * 1 2 3 22 22 H 1.08997 * 109.47304 * 150.29948 * 1 2 3 23 23 H 1.00901 * 110.99869 * 296.04907 * 7 5 4 24 24 H 1.00896 * 110.99543 * 60.00030 * 7 5 4 25 25 H 1.08997 * 109.47039 * 295.00606 * 8 5 4 26 26 H 1.09001 * 109.46723 * 55.00082 * 8 5 4 27 27 H 0.96998 * 120.00498 * 180.02562 * 12 11 9 28 28 H 1.08997 * 109.46702 * 90.00045 * 18 17 4 29 29 H 1.08998 * 109.46934 * 209.99708 * 18 17 4 30 30 H 1.08998 * 109.46713 * 330.00269 * 18 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2813 1.0843 0.0000 4 6 3.5409 0.7303 -0.0027 5 6 4.7229 1.6651 -0.0065 6 1 5.6238 1.1106 -0.2688 7 7 4.5003 2.7318 -0.9918 8 6 4.8900 2.2817 1.3837 9 6 6.1419 3.1201 1.4142 10 1 6.7570 3.2043 0.5306 11 6 6.5025 3.7787 2.5706 12 7 7.5952 4.5099 2.5974 13 14 5.4397 3.6312 4.0996 14 1 5.8971 2.4746 4.9109 15 1 5.5529 4.8750 4.9030 16 1 4.0239 3.4270 3.7006 17 7 3.5966 -0.6128 0.0044 18 6 4.8048 -1.4415 0.0087 19 7 2.2666 -1.0639 0.0061 20 1 -0.3633 0.0054 1.0277 21 1 -0.3633 0.8874 -0.5184 22 1 -0.3634 -0.8926 -0.5092 23 1 4.4510 2.3559 -1.9268 24 1 3.6702 3.2609 -0.7705 25 1 4.0273 2.9085 1.6093 26 1 4.9663 1.4876 2.1265 27 1 7.8492 4.9729 3.4110 28 1 5.1044 -1.6415 1.0374 29 1 4.6009 -2.3836 -0.5001 30 1 5.6077 -0.9157 -0.5080 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260007204.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:07 Heat of formation + Delta-G solvation = 80.742852 kcal Electronic energy + Delta-G solvation = -13825.453636 eV Core-core repulsion = 11464.413118 eV Total energy + Delta-G solvation = -2361.040518 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.87093 -35.85523 -34.11846 -32.44804 -30.96172 -29.33509 -28.96070 -26.28480 -24.44533 -21.49013 -20.52973 -19.39404 -17.02997 -16.31219 -15.87617 -15.27920 -14.61845 -14.05639 -13.78032 -13.66976 -13.20494 -12.93663 -12.51836 -12.34474 -12.29617 -11.66514 -11.49436 -11.14398 -10.51582 -10.31481 -9.80497 -9.72618 -9.41374 -9.20629 -9.02861 -8.51669 -8.26835 -5.99623 -3.96167 1.84288 2.53653 3.13705 3.31647 3.40471 3.45862 4.28225 4.48108 4.59504 4.98089 5.13869 5.19126 5.23924 5.38605 5.45085 5.56788 5.64292 5.77763 6.02971 6.28242 6.53465 6.70216 6.95325 7.02753 7.22600 7.63322 7.79957 7.99986 8.39867 8.58448 9.10674 9.61872 11.13530 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.035880 B = 0.008956 C = 0.008484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.194582 B = 3125.532087 C = 3299.462939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 C 0.213 3.787 3 N -0.544 5.544 4 C 0.258 3.742 5 C 0.184 3.816 6 H 0.094 0.906 7 N -0.801 5.801 8 C 0.004 3.996 9 C -0.499 4.499 10 H 0.083 0.917 11 C 0.068 3.932 12 N -0.902 5.902 13 Si 0.870 3.130 14 H -0.280 1.280 15 H -0.287 1.287 16 H -0.266 1.266 17 N -0.383 5.383 18 C 0.096 3.904 19 N -0.337 5.337 20 H 0.080 0.920 21 H 0.083 0.917 22 H 0.076 0.924 23 H 0.326 0.674 24 H 0.350 0.650 25 H 0.028 0.972 26 H 0.012 0.988 27 H 0.262 0.738 28 H 0.081 0.919 29 H 0.087 0.913 30 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.153 -10.283 -5.530 14.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.069 4.069 3 N -0.273 5.273 4 C -0.020 4.020 5 C 0.068 3.932 6 H 0.112 0.888 7 N -0.328 5.328 8 C -0.035 4.035 9 C -0.537 4.537 10 H 0.102 0.898 11 C -0.133 4.133 12 N -0.541 5.541 13 Si 0.698 3.302 14 H -0.206 1.206 15 H -0.213 1.213 16 H -0.191 1.191 17 N -0.172 5.172 18 C -0.046 4.046 19 N -0.166 5.166 20 H 0.098 0.902 21 H 0.102 0.898 22 H 0.095 0.905 23 H 0.137 0.863 24 H 0.164 0.836 25 H 0.046 0.954 26 H 0.030 0.970 27 H 0.072 0.928 28 H 0.099 0.901 29 H 0.106 0.894 30 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -8.650 -10.325 -5.164 14.426 hybrid contribution -1.106 -0.656 0.803 1.516 sum -9.756 -10.981 -4.361 15.323 Atomic orbital electron populations 1.20015 0.84339 1.03515 1.03412 1.24237 0.98086 0.86153 0.98412 1.70299 1.00004 1.30639 1.26375 1.26763 0.97075 0.84166 0.94028 1.20435 0.87793 0.87426 0.97519 0.88801 1.58891 1.46459 1.23925 1.03488 1.19600 0.99244 0.96007 0.88625 1.20915 1.06054 1.27622 0.99093 0.89846 1.24939 0.94867 0.95087 0.98422 1.69888 1.24109 1.32011 1.28103 0.86933 0.81923 0.77540 0.83815 1.20561 1.21273 1.19112 1.50247 1.05751 1.06053 1.55169 1.21948 0.82963 0.95619 1.04106 1.77862 0.87169 1.22905 1.28694 0.90183 0.89789 0.90470 0.86313 0.83568 0.95396 0.96981 0.92806 0.90091 0.89419 0.88649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.64 10.51 36.01 0.38 -0.26 16 2 C 0.21 3.64 8.14 -156.85 -1.28 2.36 16 3 N -0.54 -10.32 11.05 -8.16 -0.09 -10.41 16 4 C 0.26 4.77 6.80 -155.69 -1.06 3.71 16 5 C 0.18 3.54 3.07 -68.86 -0.21 3.33 16 6 H 0.09 1.69 6.80 -51.93 -0.35 1.34 16 7 N -0.80 -14.65 8.94 -5.65 -0.05 -14.70 16 8 C 0.00 0.09 3.67 -27.88 -0.10 -0.01 16 9 C -0.50 -13.79 9.39 -34.44 -0.32 -14.11 16 10 H 0.08 2.48 7.99 -52.49 -0.42 2.06 16 11 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 12 N -0.90 -27.54 13.96 55.43 0.77 -26.77 16 13 Si 0.87 21.83 27.47 -169.99 -4.67 17.16 16 14 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 15 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 16 H -0.27 -6.60 6.54 56.52 0.37 -6.24 16 17 N -0.38 -6.42 4.04 -65.10 -0.26 -6.68 16 18 C 0.10 1.16 11.29 59.85 0.68 1.83 16 19 N -0.34 -5.90 12.70 32.42 0.41 -5.48 16 20 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 21 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 22 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 23 H 0.33 5.03 9.06 -39.29 -0.36 4.67 16 24 H 0.35 6.47 8.87 -39.29 -0.35 6.13 16 25 H 0.03 0.70 7.20 -51.93 -0.37 0.32 16 26 H 0.01 0.29 7.57 -51.93 -0.39 -0.11 16 27 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 28 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.10 1.00 6.98 -51.93 -0.36 0.63 16 LS Contribution 260.73 15.07 3.93 3.93 Total: -1.00 -33.38 260.73 -5.86 -39.24 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -3.89 Total: 5.01 kcal Atomic # 6 Polarization: 0.72 SS G_CDS: -2.02 Total: -1.29 kcal Atomic # 7 Polarization: -64.83 SS G_CDS: 0.78 Total: -64.05 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.67 Total: 17.16 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -33.38 -5.86 -39.24 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260007204.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.982 kcal (2) G-P(sol) polarization free energy of solvation -33.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds