Wall clock time and date at job start Mon Mar 30 2020 02:38:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.33241 * 125.52876 * 2 1 4 4 C 1.30838 * 109.82942 * 180.12568 * 3 2 1 5 5 C 1.50697 * 125.96157 * 179.86262 * 4 3 2 6 6 H 1.08996 * 109.47188 * 194.69219 * 5 4 3 7 7 N 1.46905 * 109.47125 * 314.68997 * 5 4 3 8 8 C 1.53001 * 109.47213 * 74.68841 * 5 4 3 9 9 C 1.50698 * 109.47176 * 174.99984 * 8 5 4 10 10 H 1.07997 * 119.99944 * 359.97438 * 9 8 5 11 11 C 1.37872 * 120.00026 * 180.02562 * 9 8 5 12 12 N 1.31510 * 120.00285 * 179.97438 * 11 9 8 13 13 Si 1.86799 * 120.00057 * 0.02562 * 11 9 8 14 14 H 1.48498 * 109.47612 * 89.99782 * 13 11 9 15 15 H 1.48505 * 109.47212 * 210.00085 * 13 11 9 16 16 H 1.48502 * 109.47147 * 329.99507 * 13 11 9 17 17 N 1.34429 * 108.07411 * 359.59960 * 4 3 2 18 18 C 1.46504 * 126.82166 * 180.20467 * 17 4 3 19 19 N 1.30720 * 125.52288 * 179.67245 * 2 1 3 20 20 H 1.08998 * 109.46761 * 270.30022 * 1 2 3 21 21 H 1.09005 * 109.46665 * 30.29466 * 1 2 3 22 22 H 1.08997 * 109.47304 * 150.29948 * 1 2 3 23 23 H 1.00901 * 110.99869 * 296.04907 * 7 5 4 24 24 H 1.00896 * 110.99543 * 60.00030 * 7 5 4 25 25 H 1.08997 * 109.47039 * 295.00606 * 8 5 4 26 26 H 1.09001 * 109.46723 * 55.00082 * 8 5 4 27 27 H 0.96998 * 120.00498 * 180.02562 * 12 11 9 28 28 H 1.08997 * 109.46702 * 90.00045 * 18 17 4 29 29 H 1.08998 * 109.46934 * 209.99708 * 18 17 4 30 30 H 1.08998 * 109.46713 * 330.00269 * 18 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2813 1.0843 0.0000 4 6 3.5409 0.7303 -0.0027 5 6 4.7229 1.6651 -0.0065 6 1 5.6238 1.1106 -0.2688 7 7 4.5003 2.7318 -0.9918 8 6 4.8900 2.2817 1.3837 9 6 6.1419 3.1201 1.4142 10 1 6.7570 3.2043 0.5306 11 6 6.5025 3.7787 2.5706 12 7 7.5952 4.5099 2.5974 13 14 5.4397 3.6312 4.0996 14 1 5.8971 2.4746 4.9109 15 1 5.5529 4.8750 4.9030 16 1 4.0239 3.4270 3.7006 17 7 3.5966 -0.6128 0.0044 18 6 4.8048 -1.4415 0.0087 19 7 2.2666 -1.0639 0.0061 20 1 -0.3633 0.0054 1.0277 21 1 -0.3633 0.8874 -0.5184 22 1 -0.3634 -0.8926 -0.5092 23 1 4.4510 2.3559 -1.9268 24 1 3.6702 3.2609 -0.7705 25 1 4.0273 2.9085 1.6093 26 1 4.9663 1.4876 2.1265 27 1 7.8492 4.9729 3.4110 28 1 5.1044 -1.6415 1.0374 29 1 4.6009 -2.3836 -0.5001 30 1 5.6077 -0.9157 -0.5080 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260007204.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:06 Heat of formation + Delta-G solvation = 55.748612 kcal Electronic energy + Delta-G solvation = -13826.537467 eV Core-core repulsion = 11464.413118 eV Total energy + Delta-G solvation = -2362.124349 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -43.17384 -37.44287 -35.33304 -34.52600 -32.25343 -30.87305 -30.37371 -27.54270 -26.05851 -23.23877 -21.78597 -20.87953 -18.97190 -17.72909 -17.19908 -16.78818 -16.30652 -15.77137 -15.20032 -14.73107 -14.62938 -14.38476 -14.03737 -13.50616 -13.35263 -13.27243 -12.88075 -12.85432 -12.39337 -12.11022 -11.77645 -11.34957 -11.06763 -10.73986 -10.72254 -10.34201 -9.72223 -8.21405 -6.21701 0.51949 1.33335 1.36776 1.38019 1.47732 1.82332 2.38122 3.00396 3.12163 3.45516 3.73521 3.82885 4.09923 4.30330 4.37651 4.53718 4.63835 4.71015 4.86742 4.88473 5.04730 5.26449 5.37290 5.51669 5.61317 5.79593 6.19654 6.39242 6.62688 6.86843 7.08820 7.39633 8.94862 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.035880 B = 0.008956 C = 0.008484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.194582 B = 3125.532087 C = 3299.462939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 C 0.202 3.798 3 N -0.566 5.566 4 C 0.246 3.754 5 C 0.195 3.805 6 H 0.106 0.894 7 N -0.810 5.810 8 C 0.011 3.989 9 C -0.494 4.494 10 H 0.053 0.947 11 C 0.010 3.990 12 N -0.947 5.947 13 Si 0.934 3.066 14 H -0.268 1.268 15 H -0.284 1.284 16 H -0.261 1.261 17 N -0.380 5.380 18 C 0.084 3.916 19 N -0.349 5.349 20 H 0.091 0.909 21 H 0.093 0.907 22 H 0.096 0.904 23 H 0.343 0.657 24 H 0.349 0.651 25 H 0.015 0.985 26 H 0.015 0.985 27 H 0.264 0.736 28 H 0.088 0.912 29 H 0.110 0.890 30 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.488 -11.611 -5.387 16.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.080 4.080 3 N -0.296 5.296 4 C -0.034 4.034 5 C 0.079 3.921 6 H 0.123 0.877 7 N -0.338 5.338 8 C -0.028 4.028 9 C -0.533 4.533 10 H 0.071 0.929 11 C -0.186 4.186 12 N -0.588 5.588 13 Si 0.759 3.241 14 H -0.194 1.194 15 H -0.210 1.210 16 H -0.186 1.186 17 N -0.170 5.170 18 C -0.057 4.057 19 N -0.179 5.179 20 H 0.110 0.890 21 H 0.112 0.888 22 H 0.115 0.885 23 H 0.156 0.844 24 H 0.162 0.838 25 H 0.033 0.967 26 H 0.033 0.967 27 H 0.073 0.927 28 H 0.107 0.893 29 H 0.128 0.872 30 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -9.982 -11.685 -5.040 16.174 hybrid contribution -0.662 -0.279 0.676 0.986 sum -10.644 -11.965 -4.364 16.598 Atomic orbital electron populations 1.20216 0.81283 1.05001 1.04579 1.25114 0.99944 0.85375 0.97579 1.70280 1.00503 1.31921 1.26885 1.26352 0.96717 0.84884 0.95403 1.20066 0.88979 0.87705 0.95333 0.87655 1.58841 1.46480 1.24040 1.04444 1.19418 0.96447 0.95321 0.91590 1.21112 1.06867 1.27492 0.97780 0.92924 1.25743 0.96085 0.95036 1.01763 1.70024 1.26087 1.33566 1.29153 0.85915 0.80254 0.77839 0.80102 1.19373 1.21030 1.18583 1.50518 1.06623 1.05878 1.53988 1.22340 0.81842 0.96318 1.05203 1.77831 0.87535 1.23412 1.29113 0.89030 0.88783 0.88519 0.84393 0.83763 0.96694 0.96726 0.92701 0.89347 0.87193 0.87170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.10 10.51 71.24 0.75 -0.35 16 2 C 0.20 6.48 8.14 138.63 1.13 7.60 16 3 N -0.57 -20.62 11.05 -179.72 -1.99 -22.61 16 4 C 0.25 8.69 6.80 138.22 0.94 9.63 16 5 C 0.19 7.29 3.07 44.17 0.14 7.43 16 6 H 0.11 3.65 6.80 -2.39 -0.02 3.64 16 7 N -0.81 -29.03 8.94 -171.80 -1.54 -30.57 16 8 C 0.01 0.52 3.67 29.85 0.11 0.62 16 9 C -0.49 -27.44 9.39 25.60 0.24 -27.20 16 10 H 0.05 3.19 7.99 -2.91 -0.02 3.17 16 11 C 0.01 0.60 5.47 84.65 0.46 1.06 16 12 N -0.95 -58.58 13.96 21.44 0.30 -58.28 16 13 Si 0.93 44.82 27.47 68.60 1.88 46.71 16 14 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 15 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 16 H -0.26 -12.24 6.54 99.48 0.65 -11.59 16 17 N -0.38 -11.98 4.04 -359.87 -1.45 -13.44 16 18 C 0.08 1.81 11.29 127.77 1.44 3.25 16 19 N -0.35 -11.49 12.70 -51.33 -0.65 -12.14 16 20 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 21 H 0.09 1.80 8.14 -2.38 -0.02 1.78 16 22 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 23 H 0.34 10.20 9.06 -89.69 -0.81 9.38 16 24 H 0.35 12.70 8.87 -89.70 -0.80 11.90 16 25 H 0.01 0.73 7.20 -2.39 -0.02 0.71 16 26 H 0.01 0.67 7.57 -2.39 -0.02 0.65 16 27 H 0.26 15.36 8.31 -92.71 -0.77 14.58 16 28 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.11 2.04 6.98 -2.39 -0.02 2.02 16 Total: -1.00 -70.67 260.73 1.26 -69.40 By element: Atomic # 1 Polarization: 19.38 SS G_CDS: -0.50 Total: 18.88 kcal Atomic # 6 Polarization: -3.16 SS G_CDS: 5.21 Total: 2.05 kcal Atomic # 7 Polarization: -131.71 SS G_CDS: -5.33 Total: -137.04 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 1.88 Total: 46.71 kcal Total: -70.67 1.26 -69.40 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260007204.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.150 kcal (2) G-P(sol) polarization free energy of solvation -70.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds