Wall clock time and date at job start Mon Mar 30 2020 02:48:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52990 * 109.47306 * 2 1 4 4 N 1.46496 * 109.47323 * 120.00388 * 2 1 3 5 5 N 1.28782 * 125.45072 * 299.69361 * 4 2 1 6 6 N 1.28989 * 108.72921 * 179.83176 * 5 4 2 7 7 C 1.33311 * 107.35638 * 0.41812 * 6 5 4 8 8 C 1.50701 * 126.55536 * 179.73566 * 7 6 5 9 9 H 1.08996 * 109.47504 * 180.02562 * 8 7 6 10 10 C 1.53003 * 109.46542 * 60.00781 * 8 7 6 11 11 C 1.50699 * 109.47239 * 300.01025 * 8 7 6 12 12 H 1.08005 * 119.99962 * 35.00962 * 11 8 7 13 13 C 1.37873 * 119.99726 * 215.00904 * 11 8 7 14 14 N 1.31517 * 120.00005 * 184.91757 * 13 11 8 15 15 Si 1.86794 * 120.00376 * 4.91475 * 13 11 8 16 16 H 1.48499 * 109.47064 * 84.83014 * 15 13 11 17 17 H 1.48500 * 109.47573 * 204.83391 * 15 13 11 18 18 H 1.48499 * 109.47040 * 324.83516 * 15 13 11 19 19 N 1.28885 * 125.45101 * 119.99677 * 4 2 1 20 20 H 1.08995 * 109.47351 * 59.99435 * 1 2 3 21 21 H 1.09000 * 109.46900 * 299.99787 * 1 2 3 22 22 H 1.09004 * 109.47635 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.46900 * 240.00213 * 2 1 3 24 24 H 1.09004 * 109.47531 * 180.02562 * 3 2 1 25 25 H 1.09005 * 109.47376 * 300.00544 * 3 2 1 26 26 H 1.09000 * 109.46967 * 60.00255 * 3 2 1 27 27 H 1.09005 * 109.47168 * 175.02674 * 10 8 7 28 28 H 1.09005 * 109.47258 * 295.02254 * 10 8 7 29 29 H 1.08996 * 109.47285 * 55.02260 * 10 8 7 30 30 H 0.96990 * 120.00427 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0184 -0.6907 1.1961 5 7 1.7774 -0.3402 2.4117 6 7 2.3596 -1.1733 3.2060 7 6 2.9928 -2.0689 2.4484 8 6 3.8165 -3.2336 2.9343 9 1 4.2066 -3.7849 2.0788 10 6 2.9408 -4.1591 3.7815 11 6 4.9634 -2.7244 3.7688 12 1 4.8308 -1.8550 4.3957 13 6 6.1819 -3.3685 3.7319 14 7 7.1531 -2.9843 4.5312 15 14 6.4533 -4.7867 2.5470 16 1 6.8516 -4.2533 1.2195 17 1 7.5279 -5.6690 3.0686 18 1 5.1962 -5.5653 2.4106 19 7 2.7624 -1.7430 1.2002 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 3.1300 1.4424 -0.0005 25 1 1.6766 1.9563 -0.8900 26 1 1.6767 1.9562 0.8900 27 1 3.5115 -5.0453 4.0595 28 1 2.6230 -3.6343 4.6825 29 1 2.0643 -4.4570 3.2063 30 1 8.0104 -3.4371 4.5051 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260103315.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:55 Heat of formation + Delta-G solvation = 111.897431 kcal Electronic energy + Delta-G solvation = -13882.460198 eV Core-core repulsion = 11522.770644 eV Total energy + Delta-G solvation = -2359.689554 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -43.51686 -36.54255 -34.44786 -32.62313 -31.81560 -29.94879 -27.56469 -25.25210 -24.37227 -23.34196 -20.91829 -19.74933 -17.16868 -16.78536 -16.37005 -15.03282 -14.50486 -13.91913 -13.41464 -12.93981 -12.83272 -12.51159 -12.45661 -12.24471 -11.81201 -11.74506 -11.38271 -11.09430 -10.93076 -10.72774 -10.23958 -10.19583 -10.10158 -9.79608 -9.34383 -8.87956 -8.58888 -6.11120 -4.12264 1.95033 2.45217 3.17027 3.29652 3.36231 3.37585 4.31014 4.38430 4.61083 4.78875 4.95716 5.22899 5.26649 5.30221 5.43936 5.47711 5.59877 5.86501 5.92432 6.35416 6.40984 6.57222 6.69641 6.74676 6.92074 7.04353 7.35637 7.61491 8.46301 8.97991 9.23450 9.48040 11.01414 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.046108 B = 0.008457 C = 0.008326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.118531 B = 3310.010320 C = 3362.087699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.157 3.843 3 C -0.164 4.164 4 N -0.155 5.155 5 N -0.083 5.083 6 N -0.278 5.278 7 C 0.220 3.780 8 C 0.099 3.901 9 H 0.055 0.945 10 C -0.132 4.132 11 C -0.507 4.507 12 H 0.083 0.917 13 C 0.076 3.924 14 N -0.892 5.892 15 Si 0.872 3.128 16 H -0.274 1.274 17 H -0.286 1.286 18 H -0.261 1.261 19 N -0.337 5.337 20 H 0.084 0.916 21 H 0.075 0.925 22 H 0.064 0.936 23 H 0.116 0.884 24 H 0.067 0.933 25 H 0.084 0.916 26 H 0.075 0.925 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.023 0.977 30 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.163 4.162 -10.786 16.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.056 3.944 3 C -0.222 4.222 4 N -0.067 5.067 5 N -0.076 5.076 6 N -0.149 5.149 7 C -0.062 4.062 8 C 0.076 3.924 9 H 0.073 0.927 10 C -0.191 4.191 11 C -0.546 4.546 12 H 0.101 0.899 13 C -0.127 4.127 14 N -0.529 5.529 15 Si 0.699 3.301 16 H -0.199 1.199 17 H -0.212 1.212 18 H -0.186 1.186 19 N -0.186 5.186 20 H 0.103 0.897 21 H 0.094 0.906 22 H 0.083 0.917 23 H 0.134 0.866 24 H 0.086 0.914 25 H 0.103 0.897 26 H 0.094 0.906 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.042 0.958 30 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -11.362 4.694 -10.736 16.322 hybrid contribution 0.678 -1.053 -0.723 1.446 sum -10.684 3.641 -11.459 16.084 Atomic orbital electron populations 1.22179 0.92138 1.03591 1.04141 1.21642 0.95787 0.93668 0.83348 1.22192 1.02605 0.93349 1.04090 1.50195 1.31513 1.17455 1.07536 1.78747 1.19080 1.21265 0.88531 1.75789 1.11080 1.02939 1.25138 1.26485 0.96608 0.99304 0.83804 1.17760 0.92254 0.86445 0.95899 0.92669 1.21946 0.97572 0.99432 1.00109 1.20821 0.93189 1.15491 1.25117 0.89910 1.25004 0.95618 0.96760 0.95277 1.69883 1.03990 1.41647 1.37358 0.86922 0.78405 0.82944 0.81827 1.19935 1.21173 1.18584 1.74719 1.14325 1.04528 1.25046 0.89680 0.90610 0.91652 0.86578 0.91419 0.89704 0.90579 0.92530 0.92277 0.95823 0.92388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.51 9.39 37.16 0.35 -1.16 16 2 C 0.16 1.87 3.84 -67.94 -0.26 1.61 16 3 C -0.16 -1.65 9.38 37.15 0.35 -1.31 16 4 N -0.15 -2.82 3.73 -4.96 -0.02 -2.84 16 5 N -0.08 -1.69 12.95 60.35 0.78 -0.91 16 6 N -0.28 -6.62 12.50 32.45 0.41 -6.21 16 7 C 0.22 5.26 6.86 -156.62 -1.07 4.19 16 8 C 0.10 2.45 2.43 -92.92 -0.23 2.23 16 9 H 0.06 1.36 5.29 -51.93 -0.27 1.08 16 10 C -0.13 -2.91 9.16 37.16 0.34 -2.57 16 11 C -0.51 -14.58 8.84 -34.44 -0.30 -14.88 16 12 H 0.08 2.64 8.06 -52.48 -0.42 2.22 16 13 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 14 N -0.89 -27.18 13.96 55.43 0.77 -26.41 16 15 Si 0.87 21.23 26.99 -169.99 -4.59 16.64 16 16 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16 17 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 18 H -0.26 -5.99 6.82 56.52 0.39 -5.60 16 19 N -0.34 -7.28 12.13 32.47 0.39 -6.89 16 20 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 21 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 22 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 23 H 0.12 1.22 8.14 -51.93 -0.42 0.79 16 24 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 28 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 29 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 261.73 15.07 3.94 3.94 Total: -1.00 -32.85 261.73 -3.31 -36.16 By element: Atomic # 1 Polarization: 0.39 SS G_CDS: -4.08 Total: -3.69 kcal Atomic # 6 Polarization: -8.86 SS G_CDS: -0.93 Total: -9.79 kcal Atomic # 7 Polarization: -45.60 SS G_CDS: 2.34 Total: -43.27 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.59 Total: 16.64 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -32.85 -3.31 -36.16 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260103315.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.057 kcal (2) G-P(sol) polarization free energy of solvation -32.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds