Wall clock time and date at job start Mon Mar 30 2020 02:48:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52990 * 109.47306 * 2 1 4 4 N 1.46496 * 109.47323 * 120.00388 * 2 1 3 5 5 N 1.28782 * 125.45072 * 299.69361 * 4 2 1 6 6 N 1.28989 * 108.72921 * 179.83176 * 5 4 2 7 7 C 1.33311 * 107.35638 * 0.41812 * 6 5 4 8 8 C 1.50701 * 126.55536 * 179.73566 * 7 6 5 9 9 H 1.08996 * 109.47504 * 180.02562 * 8 7 6 10 10 C 1.53003 * 109.46542 * 60.00781 * 8 7 6 11 11 C 1.50699 * 109.47239 * 300.01025 * 8 7 6 12 12 H 1.08005 * 119.99962 * 35.00962 * 11 8 7 13 13 C 1.37873 * 119.99726 * 215.00904 * 11 8 7 14 14 N 1.31517 * 120.00005 * 184.91757 * 13 11 8 15 15 Si 1.86794 * 120.00376 * 4.91475 * 13 11 8 16 16 H 1.48499 * 109.47064 * 84.83014 * 15 13 11 17 17 H 1.48500 * 109.47573 * 204.83391 * 15 13 11 18 18 H 1.48499 * 109.47040 * 324.83516 * 15 13 11 19 19 N 1.28885 * 125.45101 * 119.99677 * 4 2 1 20 20 H 1.08995 * 109.47351 * 59.99435 * 1 2 3 21 21 H 1.09000 * 109.46900 * 299.99787 * 1 2 3 22 22 H 1.09004 * 109.47635 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.46900 * 240.00213 * 2 1 3 24 24 H 1.09004 * 109.47531 * 180.02562 * 3 2 1 25 25 H 1.09005 * 109.47376 * 300.00544 * 3 2 1 26 26 H 1.09000 * 109.46967 * 60.00255 * 3 2 1 27 27 H 1.09005 * 109.47168 * 175.02674 * 10 8 7 28 28 H 1.09005 * 109.47258 * 295.02254 * 10 8 7 29 29 H 1.08996 * 109.47285 * 55.02260 * 10 8 7 30 30 H 0.96990 * 120.00427 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0184 -0.6907 1.1961 5 7 1.7774 -0.3402 2.4117 6 7 2.3596 -1.1733 3.2060 7 6 2.9928 -2.0689 2.4484 8 6 3.8165 -3.2336 2.9343 9 1 4.2066 -3.7849 2.0788 10 6 2.9408 -4.1591 3.7815 11 6 4.9634 -2.7244 3.7688 12 1 4.8308 -1.8550 4.3957 13 6 6.1819 -3.3685 3.7319 14 7 7.1531 -2.9843 4.5312 15 14 6.4533 -4.7867 2.5470 16 1 6.8516 -4.2533 1.2195 17 1 7.5279 -5.6690 3.0686 18 1 5.1962 -5.5653 2.4106 19 7 2.7624 -1.7430 1.2002 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 3.1300 1.4424 -0.0005 25 1 1.6766 1.9563 -0.8900 26 1 1.6767 1.9562 0.8900 27 1 3.5115 -5.0453 4.0595 28 1 2.6230 -3.6343 4.6825 29 1 2.0643 -4.4570 3.2063 30 1 8.0104 -3.4371 4.5051 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260103315.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:55 Heat of formation + Delta-G solvation = 88.358354 kcal Electronic energy + Delta-G solvation = -13883.480929 eV Core-core repulsion = 11522.770644 eV Total energy + Delta-G solvation = -2360.710285 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -45.15758 -37.82191 -36.25099 -34.27076 -33.76677 -31.59595 -28.33649 -27.30050 -25.79869 -25.12328 -22.38919 -21.43328 -19.05691 -18.24775 -17.99022 -16.81167 -15.84709 -15.51636 -14.72464 -14.43505 -14.40511 -14.25038 -13.62494 -13.35342 -13.19285 -13.12804 -12.84594 -12.63175 -12.54233 -12.16863 -12.02080 -11.85894 -11.79401 -11.73870 -11.31314 -10.75621 -10.66427 -8.31253 -6.39274 0.35202 1.17521 1.35285 1.38636 1.42226 1.50887 2.34523 2.97941 3.16468 3.50410 3.73417 3.81184 3.93320 4.43616 4.54827 4.60726 4.64614 4.71230 4.72589 4.83090 4.87774 4.98458 5.13788 5.15892 5.24328 5.46899 5.52277 5.58701 6.25770 6.67258 7.25090 7.55186 8.85442 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.046108 B = 0.008457 C = 0.008326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.118531 B = 3310.010320 C = 3362.087699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.134 3.866 3 C -0.159 4.159 4 N -0.131 5.131 5 N -0.082 5.082 6 N -0.317 5.317 7 C 0.197 3.803 8 C 0.099 3.901 9 H 0.063 0.937 10 C -0.125 4.125 11 C -0.515 4.515 12 H 0.031 0.969 13 C 0.020 3.980 14 N -0.942 5.942 15 Si 0.940 3.060 16 H -0.267 1.267 17 H -0.279 1.279 18 H -0.233 1.233 19 N -0.338 5.338 20 H 0.129 0.871 21 H 0.065 0.935 22 H 0.057 0.943 23 H 0.137 0.863 24 H 0.048 0.952 25 H 0.131 0.869 26 H 0.065 0.935 27 H 0.063 0.937 28 H 0.046 0.954 29 H 0.050 0.950 30 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.603 3.560 -13.580 18.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.036 3.964 3 C -0.217 4.217 4 N -0.046 5.046 5 N -0.075 5.075 6 N -0.187 5.187 7 C -0.086 4.086 8 C 0.077 3.923 9 H 0.081 0.919 10 C -0.184 4.184 11 C -0.554 4.554 12 H 0.049 0.951 13 C -0.179 4.179 14 N -0.581 5.581 15 Si 0.762 3.238 16 H -0.192 1.192 17 H -0.205 1.205 18 H -0.156 1.156 19 N -0.189 5.189 20 H 0.147 0.853 21 H 0.084 0.916 22 H 0.076 0.924 23 H 0.155 0.845 24 H 0.067 0.933 25 H 0.149 0.851 26 H 0.084 0.916 27 H 0.082 0.918 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -12.838 4.110 -13.526 19.096 hybrid contribution 1.037 -0.667 0.067 1.235 sum -11.801 3.443 -13.459 18.228 Atomic orbital electron populations 1.22211 0.89575 1.03651 1.05848 1.22511 0.97853 0.94402 0.81606 1.22236 1.01396 0.92212 1.05893 1.50893 1.29153 1.16041 1.08532 1.78642 1.18920 1.20696 0.89223 1.75741 1.12450 1.03877 1.26626 1.26251 0.97866 0.99738 0.84704 1.17669 0.91597 0.87311 0.95759 0.91892 1.21830 0.98224 0.98836 0.99516 1.20890 0.95249 1.14092 1.25186 0.95107 1.25924 0.94937 0.99971 0.97041 1.70035 1.04799 1.43732 1.39528 0.85842 0.79601 0.79336 0.79006 1.19249 1.20504 1.15599 1.74630 1.14721 1.05618 1.23905 0.85271 0.91561 0.92398 0.84484 0.93296 0.85073 0.91593 0.91779 0.93510 0.93072 0.92082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.34 9.39 71.98 0.68 -1.66 16 2 C 0.13 2.82 3.84 44.99 0.17 3.00 16 3 C -0.16 -2.77 9.38 71.98 0.67 -2.09 16 4 N -0.13 -4.60 3.73 -169.59 -0.63 -5.23 16 5 N -0.08 -3.33 12.95 37.02 0.48 -2.85 16 6 N -0.32 -15.34 12.50 -51.26 -0.64 -15.98 16 7 C 0.20 9.42 6.86 138.55 0.95 10.37 16 8 C 0.10 4.88 2.43 -12.29 -0.03 4.85 16 9 H 0.06 2.98 5.29 -2.39 -0.01 2.96 16 10 C -0.13 -5.41 9.16 71.98 0.66 -4.75 16 11 C -0.52 -30.51 8.84 25.60 0.23 -30.29 16 12 H 0.03 2.08 8.06 -2.91 -0.02 2.06 16 13 C 0.02 1.14 5.47 84.65 0.46 1.61 16 14 N -0.94 -59.15 13.96 21.45 0.30 -58.85 16 15 Si 0.94 43.15 26.99 68.60 1.85 45.00 16 16 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 17 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 18 H -0.23 -9.59 6.82 99.48 0.68 -8.91 16 19 N -0.34 -14.23 12.13 -51.20 -0.62 -14.85 16 20 H 0.13 0.86 8.14 -2.39 -0.02 0.84 16 21 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 22 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 23 H 0.14 2.36 8.14 -2.39 -0.02 2.34 16 24 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 25 H 0.13 1.10 8.14 -2.38 -0.02 1.08 16 26 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.06 2.62 8.14 -2.38 -0.02 2.60 16 28 H 0.05 2.09 8.14 -2.38 -0.02 2.07 16 29 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.27 15.70 8.31 -92.72 -0.77 14.93 16 Total: -1.00 -74.10 261.73 5.62 -68.48 By element: Atomic # 1 Polarization: 2.16 SS G_CDS: 1.09 Total: 3.25 kcal Atomic # 6 Polarization: -22.76 SS G_CDS: 3.79 Total: -18.97 kcal Atomic # 7 Polarization: -96.65 SS G_CDS: -1.12 Total: -97.76 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 1.85 Total: 45.00 kcal Total: -74.10 5.62 -68.48 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260103315.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.842 kcal (2) G-P(sol) polarization free energy of solvation -74.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds