Wall clock time and date at job start Mon Mar 30 2020 02:51:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.35313 * 125.86407 * 2 1 4 4 C 1.35349 * 106.17427 * 180.11834 * 3 2 1 5 5 C 1.50700 * 126.74914 * 179.85534 * 4 3 2 6 6 H 1.09009 * 109.47161 * 154.71092 * 5 4 3 7 7 C 1.53001 * 109.47413 * 34.71149 * 5 4 3 8 8 N 1.46904 * 109.47012 * 65.00023 * 7 5 4 9 9 C 1.52996 * 109.47144 * 274.70815 * 5 4 3 10 10 C 1.50702 * 109.47159 * 185.00130 * 9 5 4 11 11 H 1.08002 * 120.00299 * 0.02562 * 10 9 5 12 12 C 1.37884 * 119.99942 * 179.72211 * 10 9 5 13 13 N 1.31514 * 119.99698 * 0.28408 * 12 10 9 14 14 Si 1.86794 * 119.99837 * 180.27476 * 12 10 9 15 15 H 1.48504 * 109.47196 * 60.00645 * 14 12 10 16 16 H 1.48504 * 109.46887 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47679 * 300.00280 * 14 12 10 18 18 N 1.33768 * 106.49576 * 359.58896 * 4 3 2 19 19 N 1.28634 * 108.88696 * 0.26586 * 18 4 3 20 20 H 1.08998 * 109.47118 * 270.32309 * 1 2 3 21 21 H 1.09000 * 109.47545 * 30.32802 * 1 2 3 22 22 H 1.09009 * 109.46575 * 150.32437 * 1 2 3 23 23 H 1.08007 * 126.91439 * 359.97438 * 3 2 1 24 24 H 1.09004 * 109.47114 * 184.99630 * 7 5 4 25 25 H 1.08989 * 109.47131 * 304.99654 * 7 5 4 26 26 H 1.00904 * 110.99671 * 180.02562 * 8 7 5 27 27 H 1.00901 * 110.99818 * 303.95295 * 8 7 5 28 28 H 1.09004 * 109.47066 * 65.00333 * 9 5 4 29 29 H 1.08994 * 109.47405 * 305.00163 * 9 5 4 30 30 H 0.97005 * 119.99651 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2578 1.0966 0.0000 4 6 3.5321 0.6406 -0.0027 5 6 4.7879 1.4737 -0.0068 6 1 5.6055 0.9007 0.4308 7 6 4.5595 2.7447 0.8137 8 7 4.3359 2.3858 2.2205 9 6 5.1438 1.8526 -1.4458 10 6 6.4635 2.5801 -1.4619 11 1 6.9954 2.7544 -0.5383 12 6 6.9948 3.0178 -2.6566 13 7 6.3473 2.8052 -3.7814 14 14 8.6343 3.9128 -2.6774 15 1 9.6883 3.0283 -2.1187 16 1 8.9820 4.2763 -4.0747 17 1 8.5358 5.1457 -1.8556 18 7 3.4576 -0.6950 0.0050 19 7 2.2192 -1.0430 0.0064 20 1 -0.3633 0.0058 1.0276 21 1 -0.3634 0.8870 -0.5189 22 1 -0.3633 -0.8930 -0.5088 23 1 1.9380 2.1282 -0.0004 24 1 5.4358 3.3885 0.7379 25 1 3.6865 3.2727 0.4302 26 1 4.1820 3.2088 2.7836 27 1 3.5679 1.7376 2.3106 28 1 4.3672 2.4996 -1.8538 29 1 5.2194 0.9495 -2.0512 30 1 6.7210 3.1134 -4.6218 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260137407.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:36 Heat of formation + Delta-G solvation = 87.080886 kcal Electronic energy + Delta-G solvation = -13768.123947 eV Core-core repulsion = 11407.358267 eV Total energy + Delta-G solvation = -2360.765680 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.85362 -36.35762 -34.16883 -32.83994 -31.20848 -29.44571 -27.76386 -25.59164 -23.12571 -22.04543 -21.45777 -19.29716 -17.08423 -16.37962 -16.12485 -15.27795 -14.57218 -14.46169 -14.03259 -13.69361 -13.27030 -13.00275 -12.18289 -12.10257 -11.73972 -11.11956 -10.90183 -10.84340 -10.57959 -10.46007 -9.94772 -9.77980 -9.53146 -9.06195 -8.50327 -8.32800 -8.21443 -5.97480 -3.99738 1.92685 2.62498 3.06698 3.36623 3.40974 3.44207 4.47439 4.53085 4.83110 4.89020 5.08896 5.15604 5.33625 5.39302 5.60468 5.85458 5.94461 6.14059 6.53407 6.70431 6.87065 6.90347 7.02868 7.54307 7.71563 7.76921 7.86351 8.01944 8.41421 8.93649 9.06144 9.63929 11.13806 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.043135 B = 0.007931 C = 0.007248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.971912 B = 3529.821696 C = 3862.450113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.301 5.301 3 C -0.069 4.069 4 C 0.020 3.980 5 C -0.002 4.002 6 H 0.086 0.914 7 C 0.077 3.923 8 N -0.852 5.852 9 C 0.037 3.963 10 C -0.518 4.518 11 H 0.060 0.940 12 C 0.058 3.942 13 N -0.896 5.896 14 Si 0.892 3.108 15 H -0.276 1.276 16 H -0.289 1.289 17 H -0.277 1.277 18 N -0.266 5.266 19 N -0.100 5.100 20 H 0.085 0.915 21 H 0.094 0.906 22 H 0.097 0.903 23 H 0.182 0.818 24 H 0.093 0.907 25 H 0.018 0.982 26 H 0.331 0.669 27 H 0.329 0.671 28 H 0.016 0.984 29 H 0.022 0.978 30 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.184 -0.022 8.085 14.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.096 5.096 3 C -0.219 4.219 4 C -0.117 4.117 5 C -0.023 4.023 6 H 0.104 0.896 7 C -0.054 4.054 8 N -0.380 5.380 9 C -0.001 4.001 10 C -0.556 4.556 11 H 0.078 0.922 12 C -0.143 4.143 13 N -0.535 5.535 14 Si 0.720 3.280 15 H -0.201 1.201 16 H -0.214 1.214 17 H -0.203 1.203 18 N -0.132 5.132 19 N -0.079 5.079 20 H 0.104 0.896 21 H 0.113 0.887 22 H 0.116 0.884 23 H 0.199 0.801 24 H 0.111 0.889 25 H 0.037 0.963 26 H 0.143 0.857 27 H 0.141 0.859 28 H 0.034 0.966 29 H 0.040 0.960 30 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -11.439 -1.851 7.857 14.001 hybrid contribution -0.430 2.139 -0.386 2.215 sum -11.869 0.288 7.471 14.028 Atomic orbital electron populations 1.22133 0.73672 1.05520 1.04312 1.47117 1.08826 1.05190 1.48473 1.23282 0.91283 0.94139 1.13180 1.22515 0.95867 0.90989 1.02363 1.19853 0.90183 0.92257 1.00042 0.89561 1.21871 1.00691 0.96964 0.85843 1.58825 1.49932 1.18775 1.10517 1.19085 0.96482 0.96770 0.87784 1.21186 1.05043 1.36256 0.93097 0.92173 1.25010 0.97432 0.96240 0.95661 1.69967 1.38737 1.46829 0.97935 0.86653 0.84329 0.80145 0.76850 1.20127 1.21427 1.20251 1.75066 1.08665 1.12770 1.16727 1.78221 0.96909 1.12296 1.20445 0.89639 0.88709 0.88431 0.80068 0.88864 0.96343 0.85742 0.85895 0.96586 0.95994 0.92984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.69 11.39 59.85 0.68 1.37 16 2 N -0.30 -4.39 3.74 -68.05 -0.25 -4.64 16 3 C -0.07 -1.10 10.36 -17.05 -0.18 -1.27 16 4 C 0.02 0.40 5.34 -82.78 -0.44 -0.04 16 5 C 0.00 -0.05 2.48 -91.77 -0.23 -0.28 16 6 H 0.09 2.00 8.14 -51.92 -0.42 1.57 16 7 C 0.08 1.39 5.84 -3.82 -0.02 1.37 16 8 N -0.85 -13.15 9.62 -10.37 -0.10 -13.25 16 9 C 0.04 0.95 4.43 -27.88 -0.12 0.83 16 10 C -0.52 -14.33 8.34 -34.44 -0.29 -14.62 16 11 H 0.06 1.61 7.08 -52.49 -0.37 1.24 16 12 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 13 N -0.90 -26.86 13.29 55.43 0.74 -26.12 16 14 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 15 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 16 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 18 N -0.27 -5.64 12.41 33.29 0.41 -5.23 16 19 N -0.10 -1.84 13.17 60.35 0.79 -1.05 16 20 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 21 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 22 H 0.10 0.69 8.14 -51.92 -0.42 0.27 16 23 H 0.18 2.31 7.35 -52.48 -0.39 1.92 16 24 H 0.09 1.84 6.82 -51.93 -0.35 1.49 16 25 H 0.02 0.31 7.11 -51.94 -0.37 -0.06 16 26 H 0.33 4.20 9.08 -39.29 -0.36 3.84 16 27 H 0.33 4.90 7.74 -39.29 -0.30 4.60 16 28 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 259.04 15.07 3.90 3.90 Total: -1.00 -33.40 259.04 -4.03 -37.43 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -3.81 Total: 3.50 kcal Atomic # 6 Polarization: -10.40 SS G_CDS: -0.69 Total: -11.10 kcal Atomic # 7 Polarization: -51.89 SS G_CDS: 1.59 Total: -50.30 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -33.40 -4.03 -37.43 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260137407.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.514 kcal (2) G-P(sol) polarization free energy of solvation -33.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds