Wall clock time and date at job start Mon Mar 30 2020 02:51:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.35313 * 125.86407 * 2 1 4 4 C 1.35349 * 106.17427 * 180.11834 * 3 2 1 5 5 C 1.50700 * 126.74914 * 179.85534 * 4 3 2 6 6 H 1.09009 * 109.47161 * 154.71092 * 5 4 3 7 7 C 1.53001 * 109.47413 * 34.71149 * 5 4 3 8 8 N 1.46904 * 109.47012 * 65.00023 * 7 5 4 9 9 C 1.52996 * 109.47144 * 274.70815 * 5 4 3 10 10 C 1.50702 * 109.47159 * 185.00130 * 9 5 4 11 11 H 1.08002 * 120.00299 * 0.02562 * 10 9 5 12 12 C 1.37884 * 119.99942 * 179.72211 * 10 9 5 13 13 N 1.31514 * 119.99698 * 0.28408 * 12 10 9 14 14 Si 1.86794 * 119.99837 * 180.27476 * 12 10 9 15 15 H 1.48504 * 109.47196 * 60.00645 * 14 12 10 16 16 H 1.48504 * 109.46887 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47679 * 300.00280 * 14 12 10 18 18 N 1.33768 * 106.49576 * 359.58896 * 4 3 2 19 19 N 1.28634 * 108.88696 * 0.26586 * 18 4 3 20 20 H 1.08998 * 109.47118 * 270.32309 * 1 2 3 21 21 H 1.09000 * 109.47545 * 30.32802 * 1 2 3 22 22 H 1.09009 * 109.46575 * 150.32437 * 1 2 3 23 23 H 1.08007 * 126.91439 * 359.97438 * 3 2 1 24 24 H 1.09004 * 109.47114 * 184.99630 * 7 5 4 25 25 H 1.08989 * 109.47131 * 304.99654 * 7 5 4 26 26 H 1.00904 * 110.99671 * 180.02562 * 8 7 5 27 27 H 1.00901 * 110.99818 * 303.95295 * 8 7 5 28 28 H 1.09004 * 109.47066 * 65.00333 * 9 5 4 29 29 H 1.08994 * 109.47405 * 305.00163 * 9 5 4 30 30 H 0.97005 * 119.99651 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2578 1.0966 0.0000 4 6 3.5321 0.6406 -0.0027 5 6 4.7879 1.4737 -0.0068 6 1 5.6055 0.9007 0.4308 7 6 4.5595 2.7447 0.8137 8 7 4.3359 2.3858 2.2205 9 6 5.1438 1.8526 -1.4458 10 6 6.4635 2.5801 -1.4619 11 1 6.9954 2.7544 -0.5383 12 6 6.9948 3.0178 -2.6566 13 7 6.3473 2.8052 -3.7814 14 14 8.6343 3.9128 -2.6774 15 1 9.6883 3.0283 -2.1187 16 1 8.9820 4.2763 -4.0747 17 1 8.5358 5.1457 -1.8556 18 7 3.4576 -0.6950 0.0050 19 7 2.2192 -1.0430 0.0064 20 1 -0.3633 0.0058 1.0276 21 1 -0.3634 0.8870 -0.5189 22 1 -0.3633 -0.8930 -0.5088 23 1 1.9380 2.1282 -0.0004 24 1 5.4358 3.3885 0.7379 25 1 3.6865 3.2727 0.4302 26 1 4.1820 3.2088 2.7836 27 1 3.5679 1.7376 2.3106 28 1 4.3672 2.4996 -1.8538 29 1 5.2194 0.9495 -2.0512 30 1 6.7210 3.1134 -4.6218 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260137407.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:36 Heat of formation + Delta-G solvation = 60.533540 kcal Electronic energy + Delta-G solvation = -13769.275127 eV Core-core repulsion = 11407.358267 eV Total energy + Delta-G solvation = -2361.916859 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -44.18022 -37.94037 -35.37359 -34.83260 -32.73221 -31.08447 -28.74610 -27.46294 -24.71354 -23.76932 -22.71605 -20.85441 -18.66001 -17.95178 -17.51102 -16.69488 -16.37635 -15.84994 -15.52358 -15.10751 -14.26687 -14.02982 -13.91428 -13.83000 -13.06477 -13.01212 -12.75527 -12.57270 -12.26859 -12.03866 -11.70336 -11.50795 -11.13615 -10.89344 -10.51483 -9.98770 -9.48131 -8.15558 -6.25593 0.66856 1.43854 1.47411 1.53984 1.58538 1.64294 2.45437 3.18017 3.42092 3.73963 3.88597 4.07772 4.22932 4.36244 4.41181 4.52767 4.63181 4.83513 4.90109 5.06668 5.24572 5.36094 5.50701 5.72384 5.75901 5.85574 6.26405 6.30669 6.73228 6.88921 7.42997 7.56790 8.96321 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.043135 B = 0.007931 C = 0.007248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.971912 B = 3529.821696 C = 3862.450113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.284 5.284 3 C -0.046 4.046 4 C -0.013 4.013 5 C 0.010 3.990 6 H 0.057 0.943 7 C 0.090 3.910 8 N -0.852 5.852 9 C 0.049 3.951 10 C -0.531 4.531 11 H 0.066 0.934 12 C 0.002 3.998 13 N -0.935 5.935 14 Si 0.963 3.037 15 H -0.272 1.272 16 H -0.286 1.286 17 H -0.261 1.261 18 N -0.315 5.315 19 N -0.119 5.119 20 H 0.115 0.885 21 H 0.125 0.875 22 H 0.107 0.893 23 H 0.219 0.781 24 H 0.075 0.925 25 H 0.038 0.962 26 H 0.351 0.649 27 H 0.336 0.664 28 H 0.003 0.997 29 H -0.025 1.025 30 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.502 1.406 9.260 16.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.079 5.079 3 C -0.197 4.197 4 C -0.152 4.152 5 C -0.011 4.011 6 H 0.075 0.925 7 C -0.041 4.041 8 N -0.383 5.383 9 C 0.010 3.990 10 C -0.569 4.569 11 H 0.084 0.916 12 C -0.196 4.196 13 N -0.575 5.575 14 Si 0.787 3.213 15 H -0.197 1.197 16 H -0.211 1.211 17 H -0.185 1.185 18 N -0.180 5.180 19 N -0.098 5.098 20 H 0.133 0.867 21 H 0.144 0.856 22 H 0.126 0.874 23 H 0.235 0.765 24 H 0.093 0.907 25 H 0.057 0.943 26 H 0.165 0.835 27 H 0.149 0.851 28 H 0.021 0.979 29 H -0.006 1.006 30 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.795 -0.440 9.065 15.687 hybrid contribution -0.163 1.655 -0.745 1.822 sum -12.958 1.215 8.320 15.447 Atomic orbital electron populations 1.22761 0.69626 1.07630 1.06935 1.47609 1.10921 1.03899 1.45437 1.23649 0.89949 0.95731 1.10406 1.22328 0.96761 0.90802 1.05287 1.19458 0.90600 0.93781 0.97225 0.92477 1.21565 1.00767 0.94742 0.87010 1.58647 1.50611 1.19973 1.09064 1.18860 0.95744 0.94103 0.90244 1.21570 1.05833 1.36024 0.93446 0.91590 1.25936 1.01343 0.97113 0.95216 1.70108 1.40700 1.48110 0.98603 0.85535 0.79376 0.79274 0.77084 1.19725 1.21144 1.18519 1.74989 1.10463 1.13962 1.18632 1.78103 0.96508 1.13598 1.21549 0.86703 0.85627 0.87442 0.76458 0.90696 0.94347 0.83512 0.85146 0.97868 1.00636 0.92910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.84 11.39 127.77 1.46 2.30 16 2 N -0.28 -7.59 3.74 -369.21 -1.38 -8.97 16 3 C -0.05 -1.35 10.36 83.49 0.86 -0.49 16 4 C -0.01 -0.50 5.34 41.60 0.22 -0.28 16 5 C 0.01 0.45 2.48 -11.54 -0.03 0.42 16 6 H 0.06 2.76 8.14 -2.38 -0.02 2.74 16 7 C 0.09 3.17 5.84 86.30 0.50 3.67 16 8 N -0.85 -24.67 9.62 -186.72 -1.80 -26.47 16 9 C 0.05 2.61 4.43 29.85 0.13 2.75 16 10 C -0.53 -29.99 8.34 25.60 0.21 -29.78 16 11 H 0.07 3.57 7.08 -2.91 -0.02 3.55 16 12 C 0.00 0.09 5.46 84.66 0.46 0.55 16 13 N -0.93 -57.26 13.29 21.45 0.28 -56.97 16 14 Si 0.96 44.38 29.54 68.60 2.03 46.41 16 15 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 16 H -0.29 -12.96 7.11 99.48 0.71 -12.26 16 17 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 18 N -0.32 -13.65 12.41 -48.60 -0.60 -14.25 16 19 N -0.12 -4.32 13.17 37.02 0.49 -3.83 16 20 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 21 H 0.13 0.83 8.14 -2.39 -0.02 0.81 16 22 H 0.11 1.16 8.14 -2.38 -0.02 1.15 16 23 H 0.22 4.63 7.35 -2.91 -0.02 4.61 16 24 H 0.07 2.91 6.82 -2.38 -0.02 2.90 16 25 H 0.04 1.19 7.11 -2.39 -0.02 1.17 16 26 H 0.35 7.92 9.08 -89.69 -0.81 7.11 16 27 H 0.34 9.26 7.74 -89.69 -0.69 8.57 16 28 H 0.00 0.16 8.14 -2.38 -0.02 0.15 16 29 H -0.02 -1.54 8.14 -2.39 -0.02 -1.56 16 30 H 0.26 15.15 8.31 -92.70 -0.77 14.38 16 Total: -1.00 -75.49 259.04 2.49 -73.00 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -0.35 Total: 11.96 kcal Atomic # 6 Polarization: -24.69 SS G_CDS: 3.83 Total: -20.86 kcal Atomic # 7 Polarization: -107.49 SS G_CDS: -3.01 Total: -110.50 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -75.49 2.49 -73.00 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260137407.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.535 kcal (2) G-P(sol) polarization free energy of solvation -75.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds