Wall clock time and date at job start Mon Mar 30 2020 02:17:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.46982 * 2 1 4 4 C 1.52999 * 109.47316 * 239.99344 * 2 1 3 5 5 O 1.42905 * 109.46639 * 119.99575 * 2 1 3 6 6 C 1.36178 * 117.00060 * 62.79108 * 5 2 1 7 7 C 1.40506 * 126.05199 * 175.61088 * 6 5 2 8 8 N 1.30948 * 108.41003 * 179.73672 * 7 6 5 9 9 N 1.40077 * 108.35710 * 0.40457 * 8 7 6 10 10 C 1.37338 * 126.09710 * 179.85621 * 9 8 7 11 11 H 1.07995 * 120.00296 * 179.68258 * 10 9 8 12 12 C 1.38990 * 119.99644 * 359.96191 * 10 9 8 13 13 N 1.31297 * 120.00220 * 359.72691 * 12 10 9 14 14 Si 1.86799 * 119.99731 * 179.72271 * 12 10 9 15 15 H 1.48503 * 109.47325 * 60.00260 * 14 12 10 16 16 H 1.48503 * 109.47192 * 179.97438 * 14 12 10 17 17 H 1.48493 * 109.47416 * 300.00093 * 14 12 10 18 18 C 1.35503 * 126.05625 * 355.60007 * 6 5 2 19 19 H 1.08995 * 109.47397 * 306.38681 * 1 2 3 20 20 H 1.09001 * 109.47182 * 66.39089 * 1 2 3 21 21 H 1.09007 * 109.47145 * 186.38895 * 1 2 3 22 22 H 1.09003 * 109.46816 * 179.97438 * 3 2 1 23 23 H 1.08999 * 109.46904 * 299.99503 * 3 2 1 24 24 H 1.09001 * 109.47283 * 59.99844 * 3 2 1 25 25 H 1.09004 * 109.46973 * 294.60512 * 4 2 1 26 26 H 1.08997 * 109.46865 * 54.60250 * 4 2 1 27 27 H 1.09001 * 109.47023 * 174.60408 * 4 2 1 28 28 H 1.08006 * 125.79388 * 0.02562 * 7 6 5 29 29 H 0.96999 * 120.00216 * 179.97438 * 13 12 10 30 30 H 1.08005 * 126.23360 * 0.02754 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7214 -1.2491 5 8 2.0062 -0.6736 1.1669 6 6 1.6892 -1.9920 1.2924 7 6 2.1276 -2.8546 2.3112 8 7 1.6121 -4.0396 2.1000 9 7 0.8346 -3.9815 0.9363 10 6 0.1318 -5.0221 0.3800 11 1 -0.4422 -4.8652 -0.5213 12 6 0.1546 -6.2755 0.9801 13 7 0.8524 -6.4662 2.0758 14 14 -0.8075 -7.6889 0.2277 15 1 -0.3179 -7.9424 -1.1513 16 1 -0.6191 -8.9100 1.0515 17 1 -2.2498 -7.3382 0.1842 18 6 0.8950 -2.7043 0.4570 19 1 -0.3634 0.6096 0.8272 20 1 -0.3633 0.4116 -0.9417 21 1 -0.3634 -1.0213 0.1144 22 1 3.1300 1.4424 0.0005 23 1 1.6767 1.9562 -0.8900 24 1 1.6766 1.9563 0.8900 25 1 1.7578 -1.7732 -1.2020 26 1 1.6000 -0.2665 -2.1365 27 1 3.1258 -0.6384 -1.2987 28 1 2.7756 -2.5847 3.1320 29 1 0.8680 -7.3408 2.4948 30 1 0.4002 -2.3301 -0.4272 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260206790.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:02 Heat of formation + Delta-G solvation = 25.603166 kcal Electronic energy + Delta-G solvation = -14112.632987 eV Core-core repulsion = 11716.908682 eV Total energy + Delta-G solvation = -2395.724305 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.77134 -39.49073 -35.48180 -34.43889 -32.19311 -30.14495 -28.22155 -27.80754 -26.82289 -22.84733 -22.06236 -20.44763 -19.47100 -17.54713 -17.20330 -16.16000 -16.06689 -15.28052 -15.25148 -14.98469 -14.34287 -13.84012 -13.73566 -13.47956 -13.04911 -12.83828 -12.83295 -12.68320 -12.59779 -12.14689 -11.89831 -11.57999 -11.46119 -11.04750 -10.83818 -10.08614 -8.55594 -8.46544 -6.22869 1.30852 1.39659 1.55736 1.75742 2.11798 2.33409 2.55809 3.06821 3.08425 3.96812 4.00023 4.16632 4.29012 4.48505 4.70216 4.72335 4.84387 4.91153 4.93077 4.95750 4.97854 5.18354 5.24442 5.27844 5.41172 5.51930 5.88743 6.10555 6.60649 7.05226 7.46942 7.66519 8.53100 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.056048 B = 0.008447 C = 0.007728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.447753 B = 3314.097308 C = 3622.260124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.099 3.901 3 C -0.128 4.128 4 C -0.186 4.186 5 O -0.319 6.319 6 C -0.052 4.052 7 C -0.084 4.084 8 N -0.294 5.294 9 N -0.168 5.168 10 C -0.357 4.357 11 H 0.135 0.865 12 C -0.005 4.005 13 N -0.824 5.824 14 Si 1.017 2.983 15 H -0.254 1.254 16 H -0.275 1.275 17 H -0.255 1.255 18 C -0.122 4.122 19 H 0.059 0.941 20 H 0.091 0.909 21 H 0.054 0.946 22 H 0.061 0.939 23 H 0.100 0.900 24 H 0.062 0.938 25 H 0.055 0.945 26 H 0.091 0.909 27 H 0.056 0.944 28 H 0.171 0.829 29 H 0.277 0.723 30 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.960 8.707 -7.286 11.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.061 3.939 3 C -0.185 4.185 4 C -0.243 4.243 5 O -0.233 6.233 6 C -0.108 4.108 7 C -0.257 4.257 8 N -0.129 5.129 9 N 0.058 4.942 10 C -0.488 4.488 11 H 0.152 0.848 12 C -0.216 4.216 13 N -0.452 5.452 14 Si 0.836 3.164 15 H -0.178 1.178 16 H -0.200 1.200 17 H -0.179 1.179 18 C -0.268 4.268 19 H 0.078 0.922 20 H 0.110 0.890 21 H 0.073 0.927 22 H 0.080 0.920 23 H 0.119 0.881 24 H 0.081 0.919 25 H 0.074 0.926 26 H 0.110 0.890 27 H 0.075 0.925 28 H 0.188 0.812 29 H 0.087 0.913 30 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -1.853 7.527 -6.577 10.166 hybrid contribution -0.167 0.090 -0.283 0.341 sum -2.020 7.616 -6.860 10.448 Atomic orbital electron populations 1.22625 0.95227 1.02900 1.03436 1.21932 0.94101 0.93650 0.84244 1.21757 1.01745 0.91365 1.03677 1.22634 1.01832 1.01752 0.98114 1.85947 1.75039 1.18386 1.43970 1.18371 1.06887 0.85301 1.00290 1.23514 1.08324 0.91123 1.02729 1.78081 1.12871 1.19135 1.02833 1.44729 1.28220 1.06508 1.14695 1.20515 1.28713 0.88002 1.11573 0.84795 1.26823 0.97316 1.01815 0.95659 1.70359 1.33767 1.24478 1.16643 0.84685 0.78366 0.74899 0.78473 1.17846 1.19958 1.17874 1.22634 1.12062 0.86652 1.05478 0.92215 0.88990 0.92728 0.92039 0.88146 0.91910 0.92615 0.88996 0.92510 0.81171 0.91288 0.80058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.37 8.30 71.98 0.60 -4.77 16 2 C 0.10 3.08 1.11 -10.80 -0.01 3.07 16 3 C -0.13 -2.99 8.84 71.98 0.64 -2.36 16 4 C -0.19 -5.53 8.23 71.98 0.59 -4.93 16 5 O -0.32 -13.42 9.88 -95.58 -0.94 -14.36 16 6 C -0.05 -2.56 6.36 22.19 0.14 -2.42 16 7 C -0.08 -4.51 12.04 85.38 1.03 -3.48 16 8 N -0.29 -17.64 10.40 -56.54 -0.59 -18.23 16 9 N -0.17 -9.58 3.74 -190.08 -0.71 -10.29 16 10 C -0.36 -19.36 10.25 84.01 0.86 -18.50 16 11 H 0.13 6.39 7.83 -2.91 -0.02 6.37 16 12 C 0.00 -0.24 5.50 84.95 0.47 0.23 16 13 N -0.82 -47.46 11.82 21.66 0.26 -47.20 16 14 Si 1.02 38.84 29.55 68.60 2.03 40.87 16 15 H -0.25 -9.11 7.11 99.48 0.71 -8.41 16 16 H -0.27 -10.29 7.11 99.48 0.71 -9.58 16 17 H -0.25 -9.13 7.11 99.48 0.71 -8.42 16 18 C -0.12 -5.97 7.62 83.33 0.63 -5.34 16 19 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 20 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 21 H 0.05 1.89 4.62 -2.38 -0.01 1.88 16 22 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 23 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 24 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 25 H 0.06 1.98 4.57 -2.38 -0.01 1.97 16 26 H 0.09 2.05 8.14 -2.39 -0.02 2.04 16 27 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.17 8.10 8.06 -2.91 -0.02 8.08 16 29 H 0.28 14.65 8.31 -92.71 -0.77 13.88 16 30 H 0.18 7.62 4.63 -2.91 -0.01 7.61 16 Total: -1.00 -68.60 249.97 6.12 -62.48 By element: Atomic # 1 Polarization: 24.09 SS G_CDS: 1.13 Total: 25.22 kcal Atomic # 6 Polarization: -43.43 SS G_CDS: 4.95 Total: -38.49 kcal Atomic # 7 Polarization: -74.68 SS G_CDS: -1.04 Total: -75.72 kcal Atomic # 8 Polarization: -13.42 SS G_CDS: -0.94 Total: -14.36 kcal Atomic # 14 Polarization: 38.84 SS G_CDS: 2.03 Total: 40.87 kcal Total: -68.60 6.12 -62.48 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260206790.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.083 kcal (2) G-P(sol) polarization free energy of solvation -68.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds