Wall clock time and date at job start Mon Mar 30 2020 02:52:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 H 1.09004 * 115.55736 * 29.31467 * 10 9 7 12 12 C 1.53030 * 117.50703 * 243.61023 * 10 9 7 13 13 C 1.52747 * 59.99565 * 252.53525 * 12 10 9 14 14 C 1.50212 * 119.76926 * 251.03097 * 13 12 10 15 15 C 1.55154 * 115.26970 * 303.46764 * 14 13 12 16 16 C 1.54794 * 110.11547 * 318.99433 * 15 14 13 17 17 O 1.39909 * 110.59691 * 321.38380 * 16 15 14 18 18 C 1.42725 * 109.46394 * 101.76950 * 17 16 15 19 19 C 1.46606 * 113.72928 * 268.08914 * 18 17 16 20 20 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 22 22 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 23 23 H 1.08999 * 117.50094 * 0.02562 * 12 10 9 24 24 H 1.09002 * 117.50159 * 145.02329 * 12 10 9 25 25 H 1.08995 * 108.32427 * 64.97351 * 14 13 12 26 26 H 1.08996 * 108.31971 * 181.96712 * 14 13 12 27 27 H 1.08996 * 109.36138 * 198.79322 * 15 14 13 28 28 H 1.09002 * 109.25649 * 79.11980 * 15 14 13 29 29 H 1.09006 * 109.24552 * 201.10469 * 16 15 14 30 30 H 1.08990 * 109.25782 * 81.67611 * 16 15 14 31 31 H 1.08998 * 108.63318 * 146.99430 * 18 17 16 32 32 H 1.08993 * 108.52298 * 29.10799 * 18 17 16 33 33 H 1.09001 * 109.79950 * 298.64083 * 19 18 17 34 34 H 1.08995 * 109.85102 * 177.79824 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 1 3.2024 -3.4646 0.4720 12 6 2.2459 -4.5860 -1.2304 13 6 1.6770 -5.0772 0.0993 14 6 2.4217 -6.1134 0.8918 15 6 2.7206 -7.4358 0.1374 16 6 1.4935 -7.8556 -0.7077 17 8 0.3061 -7.5889 -0.0175 18 6 -0.2843 -6.3950 -0.5304 19 6 0.1224 -5.1815 0.1845 20 1 -0.4850 0.8401 -0.0004 21 1 0.6242 -2.5609 0.8844 22 1 0.6244 -2.5529 -0.8956 23 1 1.5384 -4.3649 -2.0296 24 1 3.2037 -4.9960 -1.5507 25 1 3.3688 -5.6819 1.2154 26 1 1.8370 -6.3505 1.7806 27 1 2.9478 -8.2202 0.8592 28 1 3.5783 -7.2892 -0.5191 29 1 1.5528 -8.9228 -0.9218 30 1 1.4963 -7.3007 -1.6458 31 1 -1.3685 -6.4884 -0.4690 32 1 -0.0033 -6.2924 -1.5785 33 1 -0.1867 -5.2465 1.2278 34 1 -0.3324 -4.3074 -0.2815 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260218229.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:33 Heat of formation + Delta-G solvation = -38.658759 kcal Electronic energy + Delta-G solvation = -14321.665207 eV Core-core repulsion = 12026.694639 eV Total energy + Delta-G solvation = -2294.970568 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.81804 -36.97510 -33.05717 -32.44337 -30.66802 -27.99652 -26.28784 -23.60655 -23.16874 -21.23832 -19.67492 -17.98796 -16.51282 -16.04627 -15.75343 -14.96768 -14.68366 -14.30487 -13.45926 -13.00877 -12.86708 -12.29884 -12.18754 -11.85882 -11.66836 -11.20417 -10.91066 -10.86174 -10.62329 -10.51010 -10.38758 -10.12339 -9.68967 -9.43308 -9.15539 -8.96868 -8.58691 -8.26095 -6.00070 -4.01362 3.31116 3.38647 3.42923 4.18618 4.40692 4.50184 4.97408 5.13554 5.20614 5.34411 5.39692 5.45200 5.51214 5.61982 5.73827 5.79786 5.89258 5.97487 6.14634 6.21428 6.32711 6.36403 6.42247 6.53692 6.67456 6.76436 6.87942 7.12650 7.43428 7.69034 7.78599 7.99133 8.44385 9.04524 9.62153 11.11176 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.060678 B = 0.007111 C = 0.006667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 461.340879 B = 3936.763829 C = 4199.095831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.515 4.515 8 H 0.055 0.945 9 C 0.050 3.950 10 C -0.105 4.105 11 H 0.089 0.911 12 C -0.179 4.179 13 C -0.140 4.140 14 C -0.071 4.071 15 C -0.139 4.139 16 C 0.057 3.943 17 O -0.364 6.364 18 C 0.060 3.940 19 C -0.115 4.115 20 H 0.260 0.740 21 H 0.023 0.977 22 H 0.018 0.982 23 H 0.086 0.914 24 H 0.078 0.922 25 H 0.053 0.947 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.057 0.943 31 H 0.073 0.927 32 H 0.051 0.949 33 H 0.069 0.931 34 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.298 -12.975 -1.506 13.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.553 4.553 8 H 0.073 0.927 9 C 0.013 3.987 10 C -0.123 4.123 11 H 0.107 0.893 12 C -0.216 4.216 13 C -0.140 4.140 14 C -0.109 4.109 15 C -0.177 4.177 16 C -0.021 4.021 17 O -0.282 6.282 18 C -0.017 4.017 19 C -0.153 4.153 20 H 0.069 0.931 21 H 0.041 0.959 22 H 0.037 0.963 23 H 0.104 0.896 24 H 0.096 0.904 25 H 0.072 0.928 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.075 0.925 31 H 0.091 0.909 32 H 0.070 0.930 33 H 0.087 0.913 34 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 2.065 -12.975 -1.349 13.208 hybrid contribution 0.650 1.162 -0.212 1.348 sum 2.715 -11.813 -1.561 12.221 Atomic orbital electron populations 1.69968 1.06014 1.26467 1.51156 1.25015 0.94851 0.99216 0.95446 0.86546 0.80127 0.83843 0.77552 1.19775 1.21051 1.21029 1.21299 0.93073 0.90892 1.50064 0.92651 1.18758 0.92882 0.89923 0.97132 1.22887 1.00948 0.90137 0.98315 0.89320 1.22982 1.01221 1.05757 0.91592 1.21435 0.94168 0.97738 1.00614 1.20614 0.99259 0.92936 0.98056 1.22705 0.97929 0.97510 0.99584 1.22513 0.85368 0.99577 0.94633 1.87677 1.36884 1.42052 1.61611 1.21483 0.97556 0.85593 0.97026 1.21157 0.94108 0.98127 1.01885 0.93079 0.95905 0.96330 0.89581 0.90353 0.92794 0.92007 0.91962 0.91901 0.91540 0.92508 0.90917 0.93038 0.91273 0.89126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.82 13.29 55.43 0.74 -26.08 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 4 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.51 -14.60 9.08 -34.44 -0.31 -14.91 16 8 H 0.06 1.54 7.68 -52.49 -0.40 1.14 16 9 C 0.05 1.27 3.78 -27.88 -0.11 1.17 16 10 C -0.10 -2.19 5.38 -90.67 -0.49 -2.68 16 11 H 0.09 1.88 7.94 -51.93 -0.41 1.47 16 12 C -0.18 -3.16 9.06 -26.85 -0.24 -3.40 16 13 C -0.14 -2.42 1.40 -154.46 -0.22 -2.64 16 14 C -0.07 -1.09 5.02 -26.98 -0.14 -1.23 16 15 C -0.14 -1.78 6.38 -24.65 -0.16 -1.94 16 16 C 0.06 0.73 6.24 38.10 0.24 0.96 16 17 O -0.36 -5.44 10.24 -32.69 -0.33 -5.78 16 18 C 0.06 0.87 5.89 34.11 0.20 1.07 16 19 C -0.12 -1.96 5.03 -28.16 -0.14 -2.10 16 20 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 21 H 0.02 0.62 7.97 -51.93 -0.41 0.21 16 22 H 0.02 0.50 7.35 -51.93 -0.38 0.12 16 23 H 0.09 1.55 8.03 -51.93 -0.42 1.13 16 24 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 25 H 0.05 0.82 7.89 -51.93 -0.41 0.41 16 26 H 0.06 0.98 7.97 -51.93 -0.41 0.56 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.71 6.49 -51.93 -0.34 0.38 16 31 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.05 0.71 6.70 -51.93 -0.35 0.36 16 33 H 0.07 1.19 8.13 -51.93 -0.42 0.76 16 34 H 0.09 1.69 6.40 -51.93 -0.33 1.36 16 LS Contribution 268.69 15.07 4.05 4.05 Total: -1.00 -29.60 268.69 -7.57 -37.17 By element: Atomic # 1 Polarization: 3.68 SS G_CDS: -5.54 Total: -1.86 kcal Atomic # 6 Polarization: -22.74 SS G_CDS: -1.46 Total: -24.20 kcal Atomic # 7 Polarization: -26.82 SS G_CDS: 0.74 Total: -26.08 kcal Atomic # 8 Polarization: -5.44 SS G_CDS: -0.33 Total: -5.78 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -29.60 -7.57 -37.17 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260218229.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.492 kcal (2) G-P(sol) polarization free energy of solvation -29.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds