Wall clock time and date at job start Mon Mar 30 2020 02:52:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 H 1.09004 * 115.55736 * 29.31467 * 10 9 7 12 12 C 1.53030 * 117.50703 * 243.61023 * 10 9 7 13 13 C 1.52747 * 59.99565 * 252.53525 * 12 10 9 14 14 C 1.50212 * 119.76926 * 251.03097 * 13 12 10 15 15 C 1.55154 * 115.26970 * 303.46764 * 14 13 12 16 16 C 1.54794 * 110.11547 * 318.99433 * 15 14 13 17 17 O 1.39909 * 110.59691 * 321.38380 * 16 15 14 18 18 C 1.42725 * 109.46394 * 101.76950 * 17 16 15 19 19 C 1.46606 * 113.72928 * 268.08914 * 18 17 16 20 20 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 22 22 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 23 23 H 1.08999 * 117.50094 * 0.02562 * 12 10 9 24 24 H 1.09002 * 117.50159 * 145.02329 * 12 10 9 25 25 H 1.08995 * 108.32427 * 64.97351 * 14 13 12 26 26 H 1.08996 * 108.31971 * 181.96712 * 14 13 12 27 27 H 1.08996 * 109.36138 * 198.79322 * 15 14 13 28 28 H 1.09002 * 109.25649 * 79.11980 * 15 14 13 29 29 H 1.09006 * 109.24552 * 201.10469 * 16 15 14 30 30 H 1.08990 * 109.25782 * 81.67611 * 16 15 14 31 31 H 1.08998 * 108.63318 * 146.99430 * 18 17 16 32 32 H 1.08993 * 108.52298 * 29.10799 * 18 17 16 33 33 H 1.09001 * 109.79950 * 298.64083 * 19 18 17 34 34 H 1.08995 * 109.85102 * 177.79824 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 1 3.2024 -3.4646 0.4720 12 6 2.2459 -4.5860 -1.2304 13 6 1.6770 -5.0772 0.0993 14 6 2.4217 -6.1134 0.8918 15 6 2.7206 -7.4358 0.1374 16 6 1.4935 -7.8556 -0.7077 17 8 0.3061 -7.5889 -0.0175 18 6 -0.2843 -6.3950 -0.5304 19 6 0.1224 -5.1815 0.1845 20 1 -0.4850 0.8401 -0.0004 21 1 0.6242 -2.5609 0.8844 22 1 0.6244 -2.5529 -0.8956 23 1 1.5384 -4.3649 -2.0296 24 1 3.2037 -4.9960 -1.5507 25 1 3.3688 -5.6819 1.2154 26 1 1.8370 -6.3505 1.7806 27 1 2.9478 -8.2202 0.8592 28 1 3.5783 -7.2892 -0.5191 29 1 1.5528 -8.9228 -0.9218 30 1 1.4963 -7.3007 -1.6458 31 1 -1.3685 -6.4884 -0.4690 32 1 -0.0033 -6.2924 -1.5785 33 1 -0.1867 -5.2465 1.2278 34 1 -0.3324 -4.3074 -0.2815 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260218229.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:32 Heat of formation + Delta-G solvation = -55.564941 kcal Electronic energy + Delta-G solvation = -14322.398314 eV Core-core repulsion = 12026.694639 eV Total energy + Delta-G solvation = -2295.703675 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.136 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.09443 -38.35113 -35.07468 -33.69473 -32.16445 -29.89274 -27.49193 -25.36160 -24.69119 -22.40168 -21.30763 -19.37710 -18.55599 -17.24179 -17.05391 -16.61062 -16.05138 -15.81449 -14.88712 -14.41555 -14.35111 -13.98476 -13.78270 -13.39298 -13.17371 -12.80813 -12.74449 -12.42043 -12.38398 -11.78784 -11.65387 -11.51520 -11.39197 -11.24450 -10.75740 -10.48950 -10.38492 -10.06193 -8.20324 -6.30574 1.38709 1.39000 1.52319 2.39978 2.91204 3.12027 3.17138 3.66086 3.91177 4.04630 4.12660 4.21846 4.30011 4.33497 4.55792 4.60171 4.71250 4.80562 4.83611 4.97432 5.02919 5.05372 5.15699 5.21116 5.21928 5.31519 5.38132 5.52815 5.56361 5.69036 5.83486 6.27781 6.35096 6.85027 7.38043 8.91263 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.060678 B = 0.007111 C = 0.006667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 461.340879 B = 3936.763829 C = 4199.095831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.964 3.036 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.278 1.278 7 C -0.539 4.539 8 H 0.056 0.944 9 C 0.063 3.937 10 C -0.140 4.140 11 H 0.084 0.916 12 C -0.158 4.158 13 C -0.118 4.118 14 C -0.073 4.073 15 C -0.133 4.133 16 C 0.048 3.952 17 O -0.375 6.375 18 C 0.064 3.936 19 C -0.116 4.116 20 H 0.263 0.737 21 H -0.009 1.009 22 H -0.005 1.005 23 H 0.082 0.918 24 H 0.105 0.895 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.092 0.908 30 H 0.060 0.940 31 H 0.086 0.914 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.629 -14.088 -2.122 14.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.788 3.212 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.204 1.204 7 C -0.577 4.577 8 H 0.075 0.925 9 C 0.027 3.973 10 C -0.158 4.158 11 H 0.102 0.898 12 C -0.194 4.194 13 C -0.118 4.118 14 C -0.111 4.111 15 C -0.171 4.171 16 C -0.029 4.029 17 O -0.293 6.293 18 C -0.012 4.012 19 C -0.153 4.153 20 H 0.072 0.928 21 H 0.009 0.991 22 H 0.013 0.987 23 H 0.100 0.900 24 H 0.123 0.877 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.095 0.905 28 H 0.097 0.903 29 H 0.110 0.890 30 H 0.078 0.922 31 H 0.104 0.896 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.405 -14.104 -1.965 14.642 hybrid contribution 0.212 1.494 0.004 1.509 sum 3.617 -12.610 -1.961 13.264 Atomic orbital electron populations 1.70097 1.07699 1.27654 1.51866 1.25952 0.95774 1.03218 0.94826 0.85419 0.79033 0.78891 0.77827 1.18762 1.20243 1.20381 1.21734 0.93412 0.92391 1.50142 0.92545 1.18475 0.93020 0.91435 0.94400 1.22584 1.00046 0.90700 1.02471 0.89783 1.23011 1.02315 1.03276 0.90834 1.21496 0.94467 0.95527 1.00286 1.20649 0.98736 0.93823 0.97853 1.22694 0.98509 0.95933 0.99951 1.22738 0.84449 1.01262 0.94472 1.87676 1.37855 1.41541 1.62222 1.21395 0.98416 0.84484 0.96943 1.21134 0.93942 0.98696 1.01561 0.92787 0.99118 0.98660 0.89976 0.87699 0.92698 0.92782 0.90460 0.90335 0.89035 0.92164 0.89613 0.91978 0.92119 0.91650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.20 13.29 21.45 0.28 -56.92 16 2 C 0.00 -0.01 5.46 84.66 0.46 0.45 16 3 Si 0.96 44.85 29.54 68.60 2.03 46.87 16 4 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 5 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 6 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 7 C -0.54 -31.30 9.08 25.60 0.23 -31.07 16 8 H 0.06 3.18 7.68 -2.91 -0.02 3.16 16 9 C 0.06 3.40 3.78 29.85 0.11 3.51 16 10 C -0.14 -5.94 5.38 -10.83 -0.06 -6.00 16 11 H 0.08 3.61 7.94 -2.39 -0.02 3.59 16 12 C -0.16 -5.38 9.06 30.52 0.28 -5.11 16 13 C -0.12 -4.02 1.40 -52.15 -0.07 -4.09 16 14 C -0.07 -2.12 5.02 30.43 0.15 -1.96 16 15 C -0.13 -2.94 6.38 31.94 0.20 -2.74 16 16 C 0.05 1.06 6.24 72.59 0.45 1.52 16 17 O -0.37 -10.30 10.24 -139.87 -1.43 -11.74 16 18 C 0.06 1.78 5.89 70.01 0.41 2.19 16 19 C -0.12 -3.97 5.03 29.67 0.15 -3.82 16 20 H 0.26 15.11 8.31 -92.70 -0.77 14.34 16 21 H -0.01 -0.55 7.97 -2.38 -0.02 -0.57 16 22 H 0.00 -0.28 7.35 -2.39 -0.02 -0.30 16 23 H 0.08 2.88 8.03 -2.39 -0.02 2.86 16 24 H 0.10 3.04 8.14 -2.39 -0.02 3.03 16 25 H 0.05 1.58 7.89 -2.39 -0.02 1.56 16 26 H 0.05 1.64 7.97 -2.39 -0.02 1.62 16 27 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.09 1.61 8.14 -2.38 -0.02 1.59 16 30 H 0.06 1.30 6.49 -2.39 -0.02 1.28 16 31 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 32 H 0.06 1.60 6.70 -2.39 -0.02 1.58 16 33 H 0.06 2.14 8.13 -2.39 -0.02 2.12 16 34 H 0.06 2.56 6.40 -2.39 -0.02 2.55 16 Total: -1.00 -64.32 268.69 4.25 -60.07 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: 1.05 Total: 8.83 kcal Atomic # 6 Polarization: -49.44 SS G_CDS: 2.32 Total: -47.12 kcal Atomic # 7 Polarization: -57.20 SS G_CDS: 0.28 Total: -56.92 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: -1.43 Total: -11.74 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.87 kcal Total: -64.32 4.25 -60.07 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260218229.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.503 kcal (2) G-P(sol) polarization free energy of solvation -64.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds