Wall clock time and date at job start Mon Mar 30 2020 02:14:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.40064 * 126.03631 * 2 1 4 4 C 1.30828 * 108.34128 * 179.97438 * 3 2 1 5 5 C 1.50707 * 125.85790 * 180.02562 * 4 3 2 6 6 C 1.53000 * 109.46700 * 225.02505 * 5 4 3 7 7 C 1.52995 * 109.47255 * 105.02417 * 5 4 3 8 8 C 1.50694 * 109.46990 * 345.02143 * 5 4 3 9 9 H 1.08002 * 120.00110 * 2.00842 * 8 5 4 10 10 C 1.37878 * 119.99783 * 182.28312 * 8 5 4 11 11 N 1.31512 * 120.00224 * 353.16459 * 10 8 5 12 12 Si 1.86801 * 120.00193 * 173.16778 * 10 8 5 13 13 H 1.48500 * 109.47142 * 94.98347 * 12 10 8 14 14 H 1.48493 * 109.47216 * 214.99098 * 12 10 8 15 15 H 1.48511 * 109.46837 * 334.99029 * 12 10 8 16 16 C 1.39817 * 108.28142 * 0.26461 * 4 3 2 17 17 C 1.35127 * 126.03321 * 179.97438 * 2 1 3 18 18 O 1.35762 * 126.19816 * 0.02562 * 17 2 1 19 19 H 1.09009 * 109.47205 * 90.02233 * 1 2 3 20 20 H 1.09001 * 109.47512 * 210.02256 * 1 2 3 21 21 H 1.09001 * 109.47242 * 330.02295 * 1 2 3 22 22 H 1.08996 * 109.47113 * 180.02562 * 6 5 4 23 23 H 1.09003 * 109.47363 * 299.99967 * 6 5 4 24 24 H 1.09001 * 109.47691 * 60.00117 * 6 5 4 25 25 H 1.08999 * 109.47541 * 293.96285 * 7 5 4 26 26 H 1.09010 * 109.47024 * 53.96256 * 7 5 4 27 27 H 1.08993 * 109.47343 * 173.96039 * 7 5 4 28 28 H 0.96993 * 120.00659 * 180.02562 * 11 10 8 29 29 H 1.08002 * 126.08194 * 179.69881 * 16 4 3 30 30 H 0.96701 * 113.99661 * 90.00176 * 18 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2890 1.1326 0.0000 4 6 3.5354 0.7350 0.0006 5 6 4.7477 1.6303 0.0013 6 6 5.7641 1.1132 -1.0187 7 6 5.3794 1.6323 1.3948 8 6 4.3365 3.0328 -0.3659 9 1 3.2965 3.2608 -0.5468 10 6 5.2888 4.0237 -0.4764 11 7 6.5345 3.7800 -0.1320 12 14 4.8098 5.7125 -1.1153 13 1 4.5187 6.6110 0.0307 14 1 5.9282 6.2751 -1.9139 15 1 3.6015 5.5937 -1.9705 16 6 3.5497 -0.6631 -0.0052 17 6 2.2599 -1.0927 0.0005 18 8 1.8456 -2.3856 0.0006 19 1 -0.3634 -0.0004 -1.0277 20 1 -0.3634 -0.8898 0.5142 21 1 -0.3634 0.8902 0.5135 22 1 6.6411 1.7604 -1.0179 23 1 6.0614 0.0987 -0.7532 24 1 5.3141 1.1118 -2.0115 25 1 4.6953 2.0995 2.1032 26 1 5.5788 0.6064 1.7048 27 1 6.3141 2.1922 1.3691 28 1 7.2044 4.4772 -0.2093 29 1 4.4290 -1.2902 -0.0108 30 1 1.7259 -2.7603 -0.8828 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260246780.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:29 Heat of formation + Delta-G solvation = 36.096345 kcal Electronic energy + Delta-G solvation = -14099.707039 eV Core-core repulsion = 11704.437752 eV Total energy + Delta-G solvation = -2395.269287 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.68082 -37.04792 -35.33686 -32.43551 -30.60970 -28.56954 -25.88640 -25.54037 -24.97516 -21.38480 -20.71295 -18.56698 -17.63528 -15.97620 -15.65968 -14.67746 -14.60529 -13.86240 -13.72992 -13.03800 -12.58803 -12.46162 -12.19829 -11.51107 -11.35458 -11.07916 -10.90775 -10.54870 -10.48147 -10.12646 -9.87936 -9.67926 -9.46407 -8.58653 -8.35338 -8.15964 -7.86821 -5.89008 -3.93696 2.27888 2.95318 3.37042 3.43852 3.49897 3.62846 4.36958 4.52882 4.99545 5.37833 5.39437 5.60319 5.76788 6.18720 6.35327 6.60070 6.80944 6.89845 6.96697 6.99996 7.08251 7.40064 7.50064 7.66055 7.88197 7.93850 8.07714 8.22970 8.43579 8.70509 9.09697 9.69955 11.14257 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.042566 B = 0.009799 C = 0.008509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.644478 B = 2856.668996 C = 3289.925536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.403 5.403 3 N -0.267 5.267 4 C 0.133 3.867 5 C 0.131 3.869 6 C -0.124 4.124 7 C -0.121 4.121 8 C -0.495 4.495 9 H 0.067 0.933 10 C 0.062 3.938 11 N -0.891 5.891 12 Si 0.891 3.109 13 H -0.283 1.283 14 H -0.287 1.287 15 H -0.275 1.275 16 C -0.276 4.276 17 C 0.231 3.769 18 O -0.474 6.474 19 H 0.064 0.936 20 H 0.078 0.922 21 H 0.085 0.915 22 H 0.087 0.913 23 H 0.015 0.985 24 H 0.027 0.973 25 H 0.028 0.972 26 H 0.010 0.990 27 H 0.090 0.910 28 H 0.258 0.742 29 H 0.145 0.855 30 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.169 -8.623 -1.235 11.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.195 5.195 3 N -0.090 5.090 4 C -0.033 4.033 5 C 0.129 3.871 6 C -0.182 4.182 7 C -0.180 4.180 8 C -0.534 4.534 9 H 0.085 0.915 10 C -0.138 4.138 11 N -0.531 5.531 12 Si 0.719 3.281 13 H -0.210 1.210 14 H -0.213 1.213 15 H -0.200 1.200 16 C -0.306 4.306 17 C 0.063 3.937 18 O -0.276 6.276 19 H 0.083 0.917 20 H 0.096 0.904 21 H 0.104 0.896 22 H 0.105 0.895 23 H 0.034 0.966 24 H 0.046 0.954 25 H 0.048 0.952 26 H 0.029 0.971 27 H 0.108 0.892 28 H 0.068 0.932 29 H 0.162 0.838 30 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -7.948 -7.597 -0.620 11.013 hybrid contribution 0.006 -0.046 -0.876 0.878 sum -7.942 -7.643 -1.496 11.124 Atomic orbital electron populations 1.21615 0.75889 1.03800 1.02350 1.49185 1.06368 1.04318 1.59645 1.77727 1.02071 1.03203 1.25982 1.23060 0.94240 0.92573 0.93436 1.16879 0.85053 0.91485 0.93673 1.21751 1.01423 0.97639 0.97384 1.21784 1.02754 0.97389 0.96052 1.21152 0.94248 0.92208 1.45744 0.91513 1.24887 0.95035 0.98458 0.95408 1.69837 1.01642 1.33293 1.48291 0.86588 0.78035 0.84474 0.78958 1.20959 1.21342 1.19988 1.21194 0.94764 0.96176 1.18492 1.18782 0.89463 0.79975 1.05475 1.84843 1.89088 1.20274 1.33387 0.91732 0.90353 0.89608 0.89473 0.96612 0.95407 0.95239 0.97093 0.89161 0.93164 0.83756 0.75702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.40 11.42 59.85 0.68 2.08 16 2 N -0.40 -7.61 4.02 -68.28 -0.27 -7.89 16 3 N -0.27 -6.25 11.44 33.66 0.38 -5.86 16 4 C 0.13 3.15 5.65 -82.43 -0.47 2.68 16 5 C 0.13 3.33 0.69 -156.81 -0.11 3.22 16 6 C -0.12 -2.96 7.95 37.16 0.30 -2.67 16 7 C -0.12 -3.00 8.16 37.16 0.30 -2.70 16 8 C -0.50 -13.80 7.89 -34.44 -0.27 -14.07 16 9 H 0.07 1.93 7.01 -52.49 -0.37 1.56 16 10 C 0.06 1.71 5.12 -17.82 -0.09 1.62 16 11 N -0.89 -24.61 9.48 55.43 0.53 -24.09 16 12 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 13 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 14 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 15 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 16 C -0.28 -5.62 10.12 -39.81 -0.40 -6.03 16 17 C 0.23 4.19 7.98 -16.92 -0.14 4.05 16 18 O -0.47 -6.63 13.57 -19.00 -0.26 -6.89 16 19 H 0.06 0.73 8.14 -51.92 -0.42 0.30 16 20 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 21 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 22 H 0.09 2.24 6.16 -51.93 -0.32 1.92 16 23 H 0.01 0.32 7.52 -51.93 -0.39 -0.07 16 24 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 25 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.01 0.23 8.14 -51.92 -0.42 -0.19 16 27 H 0.09 2.36 6.20 -51.93 -0.32 2.04 16 28 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 29 H 0.14 2.69 7.70 -52.49 -0.40 2.29 16 30 H 0.39 3.35 9.06 45.56 0.41 3.76 16 LS Contribution 255.14 15.07 3.84 3.84 Total: -1.00 -31.50 255.14 -4.05 -35.56 By element: Atomic # 1 Polarization: 3.57 SS G_CDS: -3.06 Total: 0.51 kcal Atomic # 6 Polarization: -11.61 SS G_CDS: -0.19 Total: -11.80 kcal Atomic # 7 Polarization: -38.47 SS G_CDS: 0.64 Total: -37.84 kcal Atomic # 8 Polarization: -6.63 SS G_CDS: -0.26 Total: -6.89 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -31.50 -4.05 -35.56 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260246780.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.652 kcal (2) G-P(sol) polarization free energy of solvation -31.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds