Wall clock time and date at job start Mon Mar 30 2020 02:14:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.40064 * 126.03631 * 2 1 4 4 C 1.30828 * 108.34128 * 179.97438 * 3 2 1 5 5 C 1.50707 * 125.85790 * 180.02562 * 4 3 2 6 6 C 1.53000 * 109.46700 * 225.02505 * 5 4 3 7 7 C 1.52995 * 109.47255 * 105.02417 * 5 4 3 8 8 C 1.50694 * 109.46990 * 345.02143 * 5 4 3 9 9 H 1.08002 * 120.00110 * 2.00842 * 8 5 4 10 10 C 1.37878 * 119.99783 * 182.28312 * 8 5 4 11 11 N 1.31512 * 120.00224 * 353.16459 * 10 8 5 12 12 Si 1.86801 * 120.00193 * 173.16778 * 10 8 5 13 13 H 1.48500 * 109.47142 * 94.98347 * 12 10 8 14 14 H 1.48493 * 109.47216 * 214.99098 * 12 10 8 15 15 H 1.48511 * 109.46837 * 334.99029 * 12 10 8 16 16 C 1.39817 * 108.28142 * 0.26461 * 4 3 2 17 17 C 1.35127 * 126.03321 * 179.97438 * 2 1 3 18 18 O 1.35762 * 126.19816 * 0.02562 * 17 2 1 19 19 H 1.09009 * 109.47205 * 90.02233 * 1 2 3 20 20 H 1.09001 * 109.47512 * 210.02256 * 1 2 3 21 21 H 1.09001 * 109.47242 * 330.02295 * 1 2 3 22 22 H 1.08996 * 109.47113 * 180.02562 * 6 5 4 23 23 H 1.09003 * 109.47363 * 299.99967 * 6 5 4 24 24 H 1.09001 * 109.47691 * 60.00117 * 6 5 4 25 25 H 1.08999 * 109.47541 * 293.96285 * 7 5 4 26 26 H 1.09010 * 109.47024 * 53.96256 * 7 5 4 27 27 H 1.08993 * 109.47343 * 173.96039 * 7 5 4 28 28 H 0.96993 * 120.00659 * 180.02562 * 11 10 8 29 29 H 1.08002 * 126.08194 * 179.69881 * 16 4 3 30 30 H 0.96701 * 113.99661 * 90.00176 * 18 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2890 1.1326 0.0000 4 6 3.5354 0.7350 0.0006 5 6 4.7477 1.6303 0.0013 6 6 5.7641 1.1132 -1.0187 7 6 5.3794 1.6323 1.3948 8 6 4.3365 3.0328 -0.3659 9 1 3.2965 3.2608 -0.5468 10 6 5.2888 4.0237 -0.4764 11 7 6.5345 3.7800 -0.1320 12 14 4.8098 5.7125 -1.1153 13 1 4.5187 6.6110 0.0307 14 1 5.9282 6.2751 -1.9139 15 1 3.6015 5.5937 -1.9705 16 6 3.5497 -0.6631 -0.0052 17 6 2.2599 -1.0927 0.0005 18 8 1.8456 -2.3856 0.0006 19 1 -0.3634 -0.0004 -1.0277 20 1 -0.3634 -0.8898 0.5142 21 1 -0.3634 0.8902 0.5135 22 1 6.6411 1.7604 -1.0179 23 1 6.0614 0.0987 -0.7532 24 1 5.3141 1.1118 -2.0115 25 1 4.6953 2.0995 2.1032 26 1 5.5788 0.6064 1.7048 27 1 6.3141 2.1922 1.3691 28 1 7.2044 4.4772 -0.2093 29 1 4.4290 -1.2902 -0.0108 30 1 1.7259 -2.7603 -0.8828 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260246780.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:28 Heat of formation + Delta-G solvation = 12.933132 kcal Electronic energy + Delta-G solvation = -14100.711471 eV Core-core repulsion = 11704.437752 eV Total energy + Delta-G solvation = -2396.273719 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.17591 -38.38049 -37.10481 -34.06111 -32.43434 -30.09128 -27.53911 -27.18614 -27.03598 -23.11935 -22.08060 -20.21274 -19.14053 -17.61578 -17.30281 -16.57437 -16.07732 -15.26716 -15.10645 -14.76515 -14.45071 -13.95700 -13.43593 -13.22289 -13.16609 -12.80269 -12.57602 -12.49437 -12.37323 -12.11920 -11.67941 -11.61248 -11.20590 -10.54671 -10.34428 -9.82112 -9.35354 -7.96806 -6.07420 0.88192 1.43168 1.45276 1.55742 1.61088 1.98173 2.50401 3.16009 3.27581 3.77707 4.34777 4.42183 4.63937 4.69387 4.79806 4.92137 4.98310 5.05707 5.14598 5.19047 5.42739 5.66396 5.68914 5.84541 5.95117 6.10869 6.20335 6.48325 6.79120 6.90660 7.09092 7.58091 9.04424 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.042566 B = 0.009799 C = 0.008509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.644478 B = 2856.668996 C = 3289.925536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.400 5.400 3 N -0.311 5.311 4 C 0.110 3.890 5 C 0.121 3.879 6 C -0.111 4.111 7 C -0.109 4.109 8 C -0.513 4.513 9 H 0.047 0.953 10 C 0.024 3.976 11 N -0.905 5.905 12 Si 0.944 3.056 13 H -0.281 1.281 14 H -0.279 1.279 15 H -0.279 1.279 16 C -0.301 4.301 17 C 0.258 3.742 18 O -0.464 6.464 19 H 0.087 0.913 20 H 0.108 0.892 21 H 0.085 0.915 22 H 0.065 0.935 23 H 0.039 0.961 24 H 0.020 0.980 25 H 0.012 0.988 26 H 0.031 0.969 27 H 0.072 0.928 28 H 0.260 0.740 29 H 0.157 0.843 30 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.323 -9.987 -1.574 13.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.192 5.192 3 N -0.136 5.136 4 C -0.055 4.055 5 C 0.119 3.881 6 C -0.169 4.169 7 C -0.168 4.168 8 C -0.551 4.551 9 H 0.066 0.934 10 C -0.175 4.175 11 N -0.544 5.544 12 Si 0.771 3.229 13 H -0.208 1.208 14 H -0.204 1.204 15 H -0.204 1.204 16 C -0.331 4.331 17 C 0.088 3.912 18 O -0.270 6.270 19 H 0.106 0.894 20 H 0.126 0.874 21 H 0.104 0.896 22 H 0.084 0.916 23 H 0.058 0.942 24 H 0.040 0.960 25 H 0.031 0.969 26 H 0.050 0.950 27 H 0.091 0.909 28 H 0.070 0.930 29 H 0.174 0.826 30 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges -9.112 -8.977 -0.978 12.828 hybrid contribution 0.228 0.262 -0.764 0.839 sum -8.884 -8.714 -1.742 12.566 Atomic orbital electron populations 1.22052 0.72823 1.05311 1.04375 1.49479 1.08027 1.03495 1.58202 1.77583 1.02704 1.05774 1.27571 1.22792 0.93814 0.93813 0.95106 1.16847 0.86525 0.90982 0.93749 1.21571 1.00107 0.98461 0.96798 1.21618 1.01262 0.98077 0.95838 1.21303 0.93439 0.94103 1.46305 0.93443 1.25474 0.95156 1.01239 0.95634 1.69931 1.02032 1.34055 1.48410 0.85766 0.77692 0.81068 0.78374 1.20753 1.20442 1.20385 1.21289 0.96486 0.94882 1.20438 1.18650 0.88679 0.81248 1.02610 1.84799 1.88597 1.17778 1.35844 0.89410 0.87373 0.89615 0.91572 0.94156 0.96046 0.96919 0.95036 0.90937 0.93041 0.82569 0.72273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.21 11.42 127.77 1.46 3.67 16 2 N -0.40 -14.25 4.02 -481.25 -1.93 -16.18 16 3 N -0.31 -14.53 11.44 -47.42 -0.54 -15.07 16 4 C 0.11 5.17 5.65 43.09 0.24 5.41 16 5 C 0.12 6.21 0.69 -53.68 -0.04 6.17 16 6 C -0.11 -5.33 7.95 71.98 0.57 -4.76 16 7 C -0.11 -5.48 8.16 71.98 0.59 -4.90 16 8 C -0.51 -29.17 7.89 25.60 0.20 -28.97 16 9 H 0.05 2.82 7.01 -2.91 -0.02 2.80 16 10 C 0.02 1.31 5.12 84.66 0.43 1.75 16 11 N -0.90 -50.51 9.48 21.45 0.20 -50.31 16 12 Si 0.94 44.82 29.54 68.60 2.03 46.85 16 13 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 14 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 15 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 16 C -0.30 -11.78 10.12 22.12 0.22 -11.56 16 17 C 0.26 8.64 7.98 83.65 0.67 9.31 16 18 O -0.46 -10.99 13.57 -90.89 -1.23 -12.22 16 19 H 0.09 1.68 8.14 -2.38 -0.02 1.66 16 20 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 21 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 22 H 0.07 3.43 6.16 -2.39 -0.01 3.42 16 23 H 0.04 1.67 7.52 -2.39 -0.02 1.66 16 24 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.03 1.39 8.14 -2.38 -0.02 1.37 16 27 H 0.07 3.86 6.20 -2.39 -0.01 3.84 16 28 H 0.26 13.86 8.31 -92.71 -0.77 13.09 16 29 H 0.16 5.52 7.70 -2.91 -0.02 5.50 16 30 H 0.42 5.16 9.06 -74.06 -0.67 4.49 16 Total: -1.00 -68.01 255.14 3.34 -64.66 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: 0.47 Total: 6.14 kcal Atomic # 6 Polarization: -28.22 SS G_CDS: 4.35 Total: -23.87 kcal Atomic # 7 Polarization: -79.29 SS G_CDS: -2.27 Total: -81.56 kcal Atomic # 8 Polarization: -10.99 SS G_CDS: -1.23 Total: -12.22 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -68.01 3.34 -64.66 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260246780.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.596 kcal (2) G-P(sol) polarization free energy of solvation -68.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds