Wall clock time and date at job start Mon Mar 30 2020 02:43:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46952 * 2 1 4 4 N 1.46501 * 109.46999 * 180.02562 * 3 2 1 5 5 N 1.28774 * 125.44905 * 270.00026 * 4 3 2 6 6 N 1.28998 * 108.73114 * 179.97438 * 5 4 3 7 7 C 1.33324 * 107.34910 * 0.02562 * 6 5 4 8 8 C 1.50698 * 126.54810 * 180.02562 * 7 6 5 9 9 H 1.09004 * 109.47085 * 179.97438 * 8 7 6 10 10 C 1.53000 * 109.47302 * 299.97525 * 8 7 6 11 11 C 1.50703 * 109.47136 * 59.97489 * 8 7 6 12 12 H 1.07998 * 120.00207 * 359.97438 * 11 8 7 13 13 C 1.37876 * 120.00228 * 180.02562 * 11 8 7 14 14 N 1.31518 * 119.99862 * 359.97438 * 13 11 8 15 15 Si 1.86800 * 120.00390 * 179.97438 * 13 11 8 16 16 H 1.48505 * 109.46693 * 359.97438 * 15 13 11 17 17 H 1.48495 * 109.47089 * 119.99731 * 15 13 11 18 18 H 1.48497 * 109.47265 * 239.99599 * 15 13 11 19 19 N 1.28882 * 125.44857 * 89.99636 * 4 3 2 20 20 H 1.08998 * 109.47167 * 179.97438 * 1 2 3 21 21 H 1.08993 * 109.47072 * 300.00455 * 1 2 3 22 22 H 1.09000 * 109.47148 * 60.00001 * 1 2 3 23 23 H 1.09001 * 109.46933 * 239.99826 * 2 1 3 24 24 H 1.09000 * 109.47148 * 119.99999 * 2 1 3 25 25 H 1.08993 * 109.47604 * 59.99870 * 3 2 1 26 26 H 1.09000 * 109.47193 * 299.99972 * 3 2 1 27 27 H 1.09003 * 109.47380 * 300.00158 * 10 8 7 28 28 H 1.09004 * 109.47133 * 59.99929 * 10 8 7 29 29 H 1.08994 * 109.47384 * 179.97438 * 10 8 7 30 30 H 0.96997 * 120.00455 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 7 4.2523 1.4423 1.0481 6 7 5.4876 1.4419 0.6765 7 6 5.5017 1.4423 -0.6567 8 6 6.7218 1.4414 -1.5412 9 1 6.4128 1.4416 -2.5865 10 6 7.5589 2.6901 -1.2567 11 6 7.5447 0.2104 -1.2608 12 1 7.2171 -0.5001 -0.5163 13 6 8.7162 -0.0084 -1.9541 14 7 9.1154 0.8570 -2.8604 15 14 9.7366 -1.5339 -1.6061 16 1 9.0750 -2.3415 -0.5499 17 1 9.8567 -2.3424 -2.8458 18 1 11.0893 -1.1302 -1.1455 19 7 4.2520 1.4426 -1.0508 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 1.8933 -0.5139 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 1.6767 1.9564 0.8899 26 1 1.6766 1.9563 -0.8900 27 1 6.9638 3.5805 -1.4594 28 1 7.8680 2.6899 -0.2113 29 1 8.4416 2.6893 -1.8961 30 1 9.9394 0.7030 -3.3484 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260250453.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:58 Heat of formation + Delta-G solvation = 108.141122 kcal Electronic energy + Delta-G solvation = -13651.325180 eV Core-core repulsion = 11291.472740 eV Total energy + Delta-G solvation = -2359.852440 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -43.46012 -36.14963 -34.48270 -32.78455 -32.02481 -29.95154 -27.10267 -25.16639 -23.43054 -22.83625 -21.34843 -20.17568 -17.09376 -16.54176 -15.89660 -15.39567 -14.81429 -13.79911 -13.62050 -13.05666 -12.71513 -12.50891 -12.36431 -11.76092 -11.52519 -11.34483 -10.99778 -10.93090 -10.88573 -10.52847 -10.24620 -10.12640 -10.01664 -9.88533 -9.35907 -8.71917 -8.39486 -6.03678 -4.09196 1.96198 2.53756 3.22301 3.32057 3.39686 3.46580 4.41452 4.47852 4.55284 4.90045 4.98029 5.14972 5.26559 5.28088 5.40727 5.59044 5.73260 5.84785 5.96973 6.59025 6.65979 6.83136 6.91447 7.10106 7.17769 7.62831 7.85068 8.03397 8.28373 8.90702 9.27501 9.54532 11.03149 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.044393 B = 0.007484 C = 0.006965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.576305 B = 3740.327884 C = 4018.902107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.142 4.142 3 C 0.135 3.865 4 N -0.161 5.161 5 N -0.090 5.090 6 N -0.279 5.279 7 C 0.219 3.781 8 C 0.129 3.871 9 H 0.055 0.945 10 C -0.130 4.130 11 C -0.503 4.503 12 H 0.059 0.941 13 C 0.064 3.936 14 N -0.890 5.890 15 Si 0.900 3.100 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.282 1.282 19 N -0.333 5.333 20 H 0.063 0.937 21 H 0.059 0.941 22 H 0.060 0.940 23 H 0.077 0.923 24 H 0.074 0.926 25 H 0.108 0.892 26 H 0.108 0.892 27 H 0.008 0.992 28 H 0.038 0.962 29 H 0.094 0.906 30 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.870 0.578 3.437 14.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.181 4.181 3 C 0.014 3.986 4 N -0.072 5.072 5 N -0.084 5.084 6 N -0.150 5.150 7 C -0.062 4.062 8 C 0.108 3.892 9 H 0.073 0.927 10 C -0.189 4.189 11 C -0.543 4.543 12 H 0.077 0.923 13 C -0.137 4.137 14 N -0.529 5.529 15 Si 0.727 3.273 16 H -0.198 1.198 17 H -0.210 1.210 18 H -0.208 1.208 19 N -0.183 5.183 20 H 0.083 0.917 21 H 0.078 0.922 22 H 0.079 0.921 23 H 0.095 0.905 24 H 0.093 0.907 25 H 0.126 0.874 26 H 0.126 0.874 27 H 0.027 0.973 28 H 0.057 0.943 29 H 0.113 0.887 30 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.134 0.622 3.876 14.669 hybrid contribution 0.728 -0.829 -0.267 1.135 sum -13.406 -0.206 3.608 13.885 Atomic orbital electron populations 1.21673 0.93754 1.02691 1.02298 1.21922 0.97020 0.94928 1.04216 1.22098 0.70928 0.99857 1.05705 1.50053 1.09613 1.45938 1.01602 1.78814 0.97451 1.16974 1.15132 1.75810 1.08262 1.18278 1.12673 1.26815 0.93252 0.95779 0.90400 1.17415 0.83543 0.96395 0.91874 0.92749 1.21762 1.01604 0.94087 1.01477 1.20951 1.06343 1.05287 1.21673 0.92269 1.24887 0.97214 0.96853 0.94778 1.69881 1.23250 1.35286 1.24441 0.86403 0.80038 0.82736 0.78092 1.19759 1.20975 1.20786 1.74750 1.04121 1.24599 1.14818 0.91747 0.92159 0.92092 0.90453 0.90690 0.87411 0.87415 0.97250 0.94261 0.88716 0.92777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.91 37.16 0.37 -0.67 16 2 C -0.14 -1.48 6.26 -26.73 -0.17 -1.65 16 3 C 0.13 1.58 6.60 -4.04 -0.03 1.55 16 4 N -0.16 -2.96 4.00 -10.68 -0.04 -3.01 16 5 N -0.09 -1.88 13.25 60.35 0.80 -1.08 16 6 N -0.28 -6.76 12.50 32.45 0.41 -6.35 16 7 C 0.22 5.38 6.81 -156.62 -1.07 4.31 16 8 C 0.13 3.42 2.77 -92.92 -0.26 3.16 16 9 H 0.05 1.50 8.14 -51.93 -0.42 1.08 16 10 C -0.13 -3.27 8.95 37.16 0.33 -2.94 16 11 C -0.50 -14.25 8.55 -34.44 -0.29 -14.55 16 12 H 0.06 1.72 7.74 -52.49 -0.41 1.32 16 13 C 0.06 1.78 5.30 -17.82 -0.09 1.69 16 14 N -0.89 -25.12 11.32 55.43 0.63 -24.49 16 15 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 16 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 17 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 19 N -0.33 -7.30 12.13 32.47 0.39 -6.90 16 20 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 21 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 22 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 23 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 24 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.11 1.06 8.14 -51.93 -0.42 0.64 16 27 H 0.01 0.20 8.14 -51.93 -0.42 -0.23 16 28 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.09 2.51 6.07 -51.93 -0.32 2.20 16 30 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 262.75 15.07 3.96 3.96 Total: -1.00 -31.35 262.75 -4.17 -35.52 By element: Atomic # 1 Polarization: -1.04 SS G_CDS: -4.08 Total: -5.12 kcal Atomic # 6 Polarization: -7.88 SS G_CDS: -1.21 Total: -9.09 kcal Atomic # 7 Polarization: -44.02 SS G_CDS: 2.18 Total: -41.84 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -31.35 -4.17 -35.52 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260250453.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.659 kcal (2) G-P(sol) polarization free energy of solvation -31.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds