Wall clock time and date at job start Mon Mar 30 2020 02:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46952 * 2 1 4 4 N 1.46501 * 109.46999 * 180.02562 * 3 2 1 5 5 N 1.28774 * 125.44905 * 270.00026 * 4 3 2 6 6 N 1.28998 * 108.73114 * 179.97438 * 5 4 3 7 7 C 1.33324 * 107.34910 * 0.02562 * 6 5 4 8 8 C 1.50698 * 126.54810 * 180.02562 * 7 6 5 9 9 H 1.09004 * 109.47085 * 179.97438 * 8 7 6 10 10 C 1.53000 * 109.47302 * 299.97525 * 8 7 6 11 11 C 1.50703 * 109.47136 * 59.97489 * 8 7 6 12 12 H 1.07998 * 120.00207 * 359.97438 * 11 8 7 13 13 C 1.37876 * 120.00228 * 180.02562 * 11 8 7 14 14 N 1.31518 * 119.99862 * 359.97438 * 13 11 8 15 15 Si 1.86800 * 120.00390 * 179.97438 * 13 11 8 16 16 H 1.48505 * 109.46693 * 359.97438 * 15 13 11 17 17 H 1.48495 * 109.47089 * 119.99731 * 15 13 11 18 18 H 1.48497 * 109.47265 * 239.99599 * 15 13 11 19 19 N 1.28882 * 125.44857 * 89.99636 * 4 3 2 20 20 H 1.08998 * 109.47167 * 179.97438 * 1 2 3 21 21 H 1.08993 * 109.47072 * 300.00455 * 1 2 3 22 22 H 1.09000 * 109.47148 * 60.00001 * 1 2 3 23 23 H 1.09001 * 109.46933 * 239.99826 * 2 1 3 24 24 H 1.09000 * 109.47148 * 119.99999 * 2 1 3 25 25 H 1.08993 * 109.47604 * 59.99870 * 3 2 1 26 26 H 1.09000 * 109.47193 * 299.99972 * 3 2 1 27 27 H 1.09003 * 109.47380 * 300.00158 * 10 8 7 28 28 H 1.09004 * 109.47133 * 59.99929 * 10 8 7 29 29 H 1.08994 * 109.47384 * 179.97438 * 10 8 7 30 30 H 0.96997 * 120.00455 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 7 4.2523 1.4423 1.0481 6 7 5.4876 1.4419 0.6765 7 6 5.5017 1.4423 -0.6567 8 6 6.7218 1.4414 -1.5412 9 1 6.4128 1.4416 -2.5865 10 6 7.5589 2.6901 -1.2567 11 6 7.5447 0.2104 -1.2608 12 1 7.2171 -0.5001 -0.5163 13 6 8.7162 -0.0084 -1.9541 14 7 9.1154 0.8570 -2.8604 15 14 9.7366 -1.5339 -1.6061 16 1 9.0750 -2.3415 -0.5499 17 1 9.8567 -2.3424 -2.8458 18 1 11.0893 -1.1302 -1.1455 19 7 4.2520 1.4426 -1.0508 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 1.8933 -0.5139 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 1.6767 1.9564 0.8899 26 1 1.6766 1.9563 -0.8900 27 1 6.9638 3.5805 -1.4594 28 1 7.8680 2.6899 -0.2113 29 1 8.4416 2.6893 -1.8961 30 1 9.9394 0.7030 -3.3484 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260250453.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:57 Heat of formation + Delta-G solvation = 87.464287 kcal Electronic energy + Delta-G solvation = -13652.221795 eV Core-core repulsion = 11291.472740 eV Total energy + Delta-G solvation = -2360.749054 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -45.14389 -37.49344 -36.26721 -34.27868 -33.79818 -31.77347 -28.25925 -27.29271 -25.28146 -24.08374 -22.51324 -22.06172 -18.69383 -18.27574 -17.71599 -16.86361 -16.17764 -15.64556 -14.90648 -14.55473 -14.36520 -13.73417 -13.58002 -13.24449 -12.95535 -12.84468 -12.77744 -12.47281 -12.45483 -12.23402 -11.93629 -11.84900 -11.78053 -11.71542 -11.27411 -10.61228 -10.50286 -8.15445 -6.28865 0.32959 1.22449 1.36190 1.42478 1.45683 1.57175 2.43559 3.12295 3.20186 3.55540 3.67508 3.91351 4.12234 4.36855 4.41669 4.71176 4.74893 4.81946 4.92096 5.05947 5.07839 5.09895 5.15718 5.31301 5.46966 5.50768 5.74864 5.92802 6.18932 6.72847 7.38018 7.55058 8.91043 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.044393 B = 0.007484 C = 0.006965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.576305 B = 3740.327884 C = 4018.902107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.136 4.136 3 C 0.115 3.885 4 N -0.135 5.135 5 N -0.087 5.087 6 N -0.313 5.313 7 C 0.198 3.802 8 C 0.130 3.870 9 H 0.034 0.966 10 C -0.117 4.117 11 C -0.525 4.525 12 H 0.042 0.958 13 C 0.024 3.976 14 N -0.910 5.910 15 Si 0.962 3.038 16 H -0.277 1.277 17 H -0.274 1.274 18 H -0.273 1.273 19 N -0.335 5.335 20 H 0.068 0.932 21 H 0.077 0.923 22 H 0.072 0.928 23 H 0.056 0.944 24 H 0.063 0.937 25 H 0.142 0.858 26 H 0.132 0.868 27 H 0.026 0.974 28 H 0.032 0.968 29 H 0.078 0.922 30 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.294 0.362 3.802 15.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.176 4.176 3 C -0.002 4.002 4 N -0.050 5.050 5 N -0.080 5.080 6 N -0.183 5.183 7 C -0.084 4.084 8 C 0.108 3.892 9 H 0.052 0.948 10 C -0.176 4.176 11 C -0.564 4.564 12 H 0.061 0.939 13 C -0.176 4.176 14 N -0.548 5.548 15 Si 0.787 3.213 16 H -0.202 1.202 17 H -0.199 1.199 18 H -0.198 1.198 19 N -0.186 5.186 20 H 0.087 0.913 21 H 0.096 0.904 22 H 0.091 0.909 23 H 0.075 0.925 24 H 0.082 0.918 25 H 0.160 0.840 26 H 0.150 0.850 27 H 0.045 0.955 28 H 0.051 0.949 29 H 0.096 0.904 30 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -15.573 0.414 4.251 16.148 hybrid contribution 0.983 -0.747 -0.382 1.292 sum -14.590 -0.333 3.869 15.098 Atomic orbital electron populations 1.21649 0.90642 1.03553 1.03771 1.21901 0.99493 0.93491 1.02674 1.22915 0.67080 1.01529 1.08679 1.50662 1.11467 1.42608 1.00220 1.78698 0.96783 1.17063 1.15477 1.75745 1.09993 1.19915 1.12614 1.26382 0.93615 0.97826 0.90572 1.17191 0.84521 0.96283 0.91166 0.94808 1.21579 1.01000 0.94494 1.00527 1.21064 1.07425 1.06031 1.21895 0.93934 1.25607 0.97973 0.99603 0.94420 1.69964 1.23672 1.36499 1.24685 0.85453 0.78555 0.79275 0.78046 1.20180 1.19894 1.19819 1.74672 1.03558 1.24484 1.15895 0.91252 0.90425 0.90885 0.92485 0.91833 0.84008 0.84970 0.95467 0.94854 0.90353 0.92277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 9.91 71.98 0.71 -0.80 16 2 C -0.14 -2.56 6.26 30.59 0.19 -2.37 16 3 C 0.12 2.38 6.60 86.38 0.57 2.95 16 4 N -0.14 -4.80 4.00 -187.69 -0.75 -5.55 16 5 N -0.09 -3.57 13.25 37.02 0.49 -3.07 16 6 N -0.31 -15.23 12.50 -51.26 -0.64 -15.87 16 7 C 0.20 9.82 6.81 138.55 0.94 10.76 16 8 C 0.13 7.02 2.77 -12.29 -0.03 6.99 16 9 H 0.03 1.93 8.14 -2.39 -0.02 1.91 16 10 C -0.12 -5.96 8.95 71.98 0.64 -5.32 16 11 C -0.53 -30.33 8.55 25.60 0.22 -30.11 16 12 H 0.04 2.54 7.74 -2.91 -0.02 2.52 16 13 C 0.02 1.33 5.30 84.65 0.45 1.78 16 14 N -0.91 -51.61 11.32 21.45 0.24 -51.36 16 15 Si 0.96 44.33 29.54 68.60 2.03 46.35 16 16 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 17 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 18 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 19 N -0.34 -14.52 12.13 -51.20 -0.62 -15.14 16 20 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 21 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 22 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 23 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 24 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.14 2.03 8.14 -2.39 -0.02 2.01 16 26 H 0.13 2.15 8.14 -2.39 -0.02 2.14 16 27 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.03 1.67 8.14 -2.39 -0.02 1.66 16 29 H 0.08 4.22 6.07 -2.39 -0.01 4.21 16 30 H 0.27 14.23 8.31 -92.71 -0.77 13.46 16 Total: -1.00 -67.63 262.75 5.56 -62.07 By element: Atomic # 1 Polarization: -2.42 SS G_CDS: 1.12 Total: -1.30 kcal Atomic # 6 Polarization: -19.83 SS G_CDS: 3.70 Total: -16.13 kcal Atomic # 7 Polarization: -89.71 SS G_CDS: -1.28 Total: -90.99 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.35 kcal Total: -67.63 5.56 -62.07 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260250453.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.535 kcal (2) G-P(sol) polarization free energy of solvation -67.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds