Wall clock time and date at job start Mon Mar 30 2020 02:14:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.40076 * 125.98958 * 2 1 4 4 C 1.31102 * 108.18684 * 179.97438 * 3 2 1 5 5 O 1.36002 * 125.95519 * 180.02562 * 4 3 2 6 6 C 1.40291 * 108.08956 * 0.26169 * 4 3 2 7 7 C 1.34948 * 125.98830 * 179.97438 * 2 1 3 8 8 C 1.50702 * 126.08816 * 0.03953 * 7 2 1 9 9 C 1.53003 * 109.46888 * 291.26366 * 8 7 2 10 10 C 1.53008 * 109.46938 * 51.25880 * 8 7 2 11 11 C 1.50695 * 109.47429 * 171.25867 * 8 7 2 12 12 H 1.08004 * 119.99856 * 359.97438 * 11 8 7 13 13 C 1.37876 * 120.00058 * 180.02562 * 11 8 7 14 14 N 1.31514 * 119.99790 * 359.97438 * 13 11 8 15 15 Si 1.86800 * 119.99911 * 179.97438 * 13 11 8 16 16 H 1.48505 * 109.46859 * 89.99803 * 15 13 11 17 17 H 1.48501 * 109.47027 * 209.99659 * 15 13 11 18 18 H 1.48501 * 109.47380 * 329.99862 * 15 13 11 19 19 H 1.09004 * 109.47099 * 95.54159 * 1 2 3 20 20 H 1.08998 * 109.47403 * 215.54175 * 1 2 3 21 21 H 1.09002 * 109.46990 * 335.54045 * 1 2 3 22 22 H 0.96696 * 113.99666 * 90.03026 * 5 4 3 23 23 H 1.08003 * 126.06389 * 179.73444 * 6 4 3 24 24 H 1.08998 * 109.47284 * 63.83654 * 9 8 7 25 25 H 1.09000 * 109.46582 * 183.83809 * 9 8 7 26 26 H 1.08996 * 109.46517 * 303.83529 * 9 8 7 27 27 H 1.08999 * 109.46811 * 59.99791 * 10 8 7 28 28 H 1.08993 * 109.46813 * 180.02562 * 10 8 7 29 29 H 1.09004 * 109.46745 * 300.00618 * 10 8 7 30 30 H 0.97004 * 119.99904 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2881 1.1334 0.0000 4 6 3.5364 0.7326 0.0006 5 8 4.6333 1.5366 0.0012 6 6 3.5434 -0.6703 -0.0052 7 6 2.2580 -1.0919 0.0005 8 6 1.7942 -2.5258 0.0003 9 6 1.1387 -2.8499 1.3443 10 6 0.7789 -2.7332 -1.1255 11 6 2.9758 -3.4360 -0.2149 12 1 3.9638 -3.0179 -0.3396 13 6 2.7954 -4.8023 -0.2538 14 7 1.5923 -5.3113 -0.1025 15 14 4.2601 -5.9305 -0.5213 16 1 4.8501 -6.2954 0.7918 17 1 3.8152 -7.1612 -1.2232 18 1 5.2792 -5.2318 -1.3449 19 1 -0.3633 -0.0992 -1.0229 20 1 -0.3634 -0.8362 0.5974 21 1 -0.3633 0.9355 0.4255 22 1 4.9503 1.7686 0.8848 23 1 4.4196 -1.3017 -0.0102 24 1 0.2447 -2.2391 1.4693 25 1 0.8647 -3.9046 1.3698 26 1 1.8400 -2.6371 2.1511 27 1 1.2458 -2.5022 -2.0829 28 1 0.4432 -3.7702 -1.1253 29 1 -0.0757 -2.0748 -0.9698 30 1 1.4653 -6.2726 -0.1302 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260409646.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:30 Heat of formation + Delta-G solvation = 15.829990 kcal Electronic energy + Delta-G solvation = -14318.753581 eV Core-core repulsion = 11922.605480 eV Total energy + Delta-G solvation = -2396.148102 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.27494 -38.44568 -37.04445 -33.77574 -32.97768 -30.11058 -27.65012 -27.19574 -27.14375 -22.96141 -22.18912 -20.71421 -18.26209 -17.83326 -17.43674 -16.46562 -16.39526 -15.45443 -15.33384 -14.66744 -14.16775 -14.09084 -13.58387 -13.34322 -12.98627 -12.96510 -12.88422 -12.55825 -12.39374 -12.07093 -11.75442 -11.46536 -11.07782 -10.69921 -10.39997 -9.88139 -9.35100 -8.02806 -6.16550 0.93473 1.45445 1.47759 1.52092 1.58368 1.83569 2.47859 3.15122 3.23036 3.90468 4.16010 4.40208 4.53097 4.62596 4.80413 4.82576 4.88122 5.04418 5.08635 5.15793 5.42832 5.56684 5.58587 5.69726 5.99989 6.04411 6.28775 6.43866 6.74341 6.81302 6.87909 7.50787 8.97587 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.034907 B = 0.011512 C = 0.009227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.930706 B = 2431.629812 C = 3033.800268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.365 5.365 3 N -0.345 5.345 4 C 0.245 3.755 5 O -0.468 6.468 6 C -0.312 4.312 7 C 0.140 3.860 8 C 0.116 3.884 9 C -0.122 4.122 10 C -0.129 4.129 11 C -0.521 4.521 12 H 0.056 0.944 13 C 0.029 3.971 14 N -0.901 5.901 15 Si 0.946 3.054 16 H -0.278 1.278 17 H -0.284 1.284 18 H -0.276 1.276 19 H 0.083 0.917 20 H 0.100 0.900 21 H 0.105 0.895 22 H 0.415 0.585 23 H 0.141 0.859 24 H 0.039 0.961 25 H 0.075 0.925 26 H 0.021 0.979 27 H 0.015 0.985 28 H 0.074 0.926 29 H 0.047 0.953 30 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.747 6.345 2.250 6.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.151 5.151 3 N -0.179 5.179 4 C 0.040 3.960 5 O -0.274 6.274 6 C -0.342 4.342 7 C 0.012 3.988 8 C 0.114 3.886 9 C -0.180 4.180 10 C -0.187 4.187 11 C -0.560 4.560 12 H 0.074 0.926 13 C -0.170 4.170 14 N -0.540 5.540 15 Si 0.773 3.227 16 H -0.204 1.204 17 H -0.209 1.209 18 H -0.201 1.201 19 H 0.102 0.898 20 H 0.118 0.882 21 H 0.124 0.876 22 H 0.273 0.727 23 H 0.159 0.841 24 H 0.058 0.942 25 H 0.094 0.906 26 H 0.040 0.960 27 H 0.035 0.965 28 H 0.092 0.908 29 H 0.066 0.934 30 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.708 7.188 1.649 7.856 hybrid contribution 1.555 -1.325 0.274 2.062 sum -1.153 5.862 1.923 6.277 Atomic orbital electron populations 1.22330 0.72494 1.05608 1.04343 1.48261 1.07079 1.01990 1.57731 1.77062 1.01703 1.09322 1.29826 1.19917 0.86416 0.88801 1.00840 1.84789 1.39144 1.68160 1.35346 1.21464 0.98120 0.93710 1.20909 1.21875 0.90424 0.91626 0.94829 1.17017 0.94852 0.82700 0.94060 1.21742 0.97349 1.03170 0.95747 1.21858 0.97197 1.03096 0.96564 1.21347 0.93693 0.91292 1.49663 0.92560 1.25423 0.97845 0.98973 0.94787 1.69871 1.21484 1.12318 1.50331 0.85733 0.80300 0.78542 0.78119 1.20359 1.20948 1.20116 0.89832 0.88211 0.87611 0.72675 0.84117 0.94213 0.90592 0.95988 0.96538 0.90751 0.93448 0.92847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.61 9.58 127.77 1.22 3.84 16 2 N -0.36 -14.10 4.01 -356.05 -1.43 -15.52 16 3 N -0.35 -13.89 12.59 -170.48 -2.15 -16.04 16 4 C 0.25 9.83 8.47 85.30 0.72 10.55 16 5 O -0.47 -15.39 13.66 -93.57 -1.28 -16.66 16 6 C -0.31 -13.74 9.82 22.09 0.22 -13.52 16 7 C 0.14 6.13 5.48 41.40 0.23 6.36 16 8 C 0.12 5.34 0.48 -53.67 -0.03 5.31 16 9 C -0.12 -5.34 8.20 71.98 0.59 -4.75 16 10 C -0.13 -5.68 8.02 71.98 0.58 -5.11 16 11 C -0.52 -26.93 7.78 25.60 0.20 -26.73 16 12 H 0.06 2.96 5.72 -2.91 -0.02 2.94 16 13 C 0.03 1.50 5.14 84.65 0.44 1.94 16 14 N -0.90 -46.56 9.33 21.45 0.20 -46.36 16 15 Si 0.95 41.71 29.54 68.60 2.03 43.73 16 16 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 17 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 18 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 19 H 0.08 2.17 7.52 -2.38 -0.02 2.15 16 20 H 0.10 2.71 5.05 -2.39 -0.01 2.69 16 21 H 0.11 2.44 8.14 -2.39 -0.02 2.42 16 22 H 0.41 8.69 9.06 -74.06 -0.67 8.02 16 23 H 0.14 6.31 6.49 -2.91 -0.02 6.29 16 24 H 0.04 1.46 5.82 -2.39 -0.01 1.45 16 25 H 0.08 3.65 5.98 -2.39 -0.01 3.63 16 26 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.07 3.57 6.07 -2.39 -0.01 3.56 16 29 H 0.05 1.72 5.05 -2.38 -0.01 1.71 16 30 H 0.26 13.03 8.31 -92.71 -0.77 12.26 16 Total: -1.00 -60.70 242.93 2.04 -58.65 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: 0.50 Total: 14.30 kcal Atomic # 6 Polarization: -26.27 SS G_CDS: 4.17 Total: -22.11 kcal Atomic # 7 Polarization: -74.55 SS G_CDS: -3.37 Total: -77.92 kcal Atomic # 8 Polarization: -15.39 SS G_CDS: -1.28 Total: -16.66 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 2.03 Total: 43.73 kcal Total: -60.70 2.04 -58.65 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260409646.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.484 kcal (2) G-P(sol) polarization free energy of solvation -60.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds