Wall clock time and date at job start Mon Mar 30 2020 02:56:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86797 * 119.99977 * 2 1 4 4 H 1.48497 * 109.47238 * 239.99425 * 3 2 1 5 5 H 1.48502 * 109.47397 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47358 * 119.99869 * 3 2 1 7 7 C 1.37873 * 119.99861 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00049 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00268 * 0.02562 * 7 2 1 10 10 H 1.08999 * 109.46858 * 299.99887 * 9 7 2 11 11 C 1.52998 * 109.46785 * 59.99885 * 9 7 2 12 12 C 1.54034 * 113.81696 * 269.91764 * 11 9 7 13 13 O 1.44451 * 85.42635 * 223.24146 * 12 11 9 14 14 C 1.44175 * 93.37731 * 24.08439 * 13 12 11 15 15 C 1.53000 * 109.47145 * 179.97438 * 9 7 2 16 16 C 1.54884 * 110.48881 * 305.13561 * 15 9 7 17 17 C 1.54891 * 102.74901 * 156.62265 * 16 15 9 18 18 C 1.54270 * 104.19383 * 322.05470 * 17 16 15 19 19 C 1.53869 * 106.59840 * 23.61299 * 18 17 16 20 20 H 0.97006 * 120.00005 * 0.02562 * 1 2 3 21 21 H 1.09002 * 113.00175 * 41.74833 * 11 9 7 22 22 H 1.09002 * 113.86289 * 337.34358 * 12 11 9 23 23 H 1.08995 * 113.86748 * 109.05209 * 12 11 9 24 24 H 1.09000 * 113.86654 * 221.76678 * 14 13 12 25 25 H 1.09003 * 113.98077 * 90.08143 * 14 13 12 26 26 H 1.09005 * 110.53649 * 182.51868 * 15 9 7 27 27 H 1.09006 * 110.75200 * 274.93807 * 16 15 9 28 28 H 1.08999 * 110.75795 * 38.30549 * 16 15 9 29 29 H 1.08999 * 110.48551 * 203.37815 * 17 16 15 30 30 H 1.08994 * 110.48797 * 80.73610 * 17 16 15 31 31 H 1.08997 * 110.03137 * 264.32576 * 18 17 16 32 32 H 1.08996 * 110.07196 * 142.91886 * 18 17 16 33 33 H 1.09003 * 110.03475 * 240.71592 * 19 18 17 34 34 H 1.09000 * 110.03747 * 119.28166 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0044 -1.1940 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 1 0.6240 -2.5567 0.8903 11 6 0.3718 -2.5804 -1.2490 12 6 -1.0434 -2.0050 -1.0524 13 8 -1.4927 -3.1701 -1.7786 14 6 -0.3253 -3.9418 -1.4316 15 6 2.2452 -3.6621 0.0005 16 6 3.2322 -3.5315 -1.1860 17 6 4.4544 -4.3530 -0.7059 18 6 4.5514 -4.0409 0.8018 19 6 3.1468 -3.6016 1.2509 20 1 -0.4850 0.8401 -0.0004 21 1 0.8732 -2.2188 -2.1468 22 1 -1.3690 -1.9809 -0.0124 23 1 -1.2137 -1.0644 -1.5762 24 1 0.0727 -4.5341 -2.2555 25 1 -0.4292 -4.5114 -0.5081 26 1 1.7186 -4.6154 -0.0443 27 1 2.8071 -3.9647 -2.0914 28 1 3.5066 -2.4890 -1.3473 29 1 5.3583 -4.0287 -1.2215 30 1 4.2846 -5.4178 -0.8649 31 1 5.2663 -3.2358 0.9712 32 1 4.8567 -4.9324 1.3495 33 1 3.1800 -2.5833 1.6383 34 1 2.7700 -4.2805 2.0160 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260456960.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:21 Heat of formation + Delta-G solvation = -47.327187 kcal Electronic energy + Delta-G solvation = -14838.119146 eV Core-core repulsion = 12542.772687 eV Total energy + Delta-G solvation = -2295.346459 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.136 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.07778 -38.87611 -35.19042 -32.58794 -29.46164 -28.93791 -27.49613 -26.89110 -23.90853 -21.46940 -20.55242 -20.20368 -18.28101 -16.96803 -16.74220 -16.29464 -16.02155 -15.73697 -15.15769 -14.50880 -13.98494 -13.97236 -13.25851 -12.89475 -12.82741 -12.56508 -12.38689 -12.11890 -11.88906 -11.80762 -11.67059 -11.36095 -11.20370 -11.00052 -10.53546 -10.46687 -10.28592 -10.09752 -8.01631 -6.07717 1.43810 1.46018 1.51144 2.47677 3.15120 3.32522 3.93319 4.00836 4.08494 4.19206 4.40724 4.58165 4.73609 4.76917 4.81221 4.92801 4.99412 5.00935 5.03271 5.13037 5.25975 5.27643 5.42740 5.50131 5.53699 5.57323 5.67998 5.70093 5.73801 5.80408 5.97321 6.06240 6.50425 6.99235 7.56641 9.02630 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.020826 B = 0.016368 C = 0.010158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.154834 B = 1710.278183 C = 2755.782387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.015 3.985 3 Si 0.940 3.060 4 H -0.277 1.277 5 H -0.292 1.292 6 H -0.277 1.277 7 C -0.503 4.503 8 H 0.058 0.942 9 C 0.056 3.944 10 H -0.004 1.004 11 C -0.111 4.111 12 C 0.098 3.902 13 O -0.440 6.440 14 C 0.035 3.965 15 C -0.079 4.079 16 C -0.112 4.112 17 C -0.119 4.119 18 C -0.117 4.117 19 C -0.119 4.119 20 H 0.258 0.742 21 H 0.062 0.938 22 H 0.061 0.939 23 H 0.069 0.931 24 H 0.094 0.906 25 H 0.076 0.924 26 H 0.060 0.940 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.065 0.935 30 H 0.073 0.927 31 H 0.053 0.947 32 H 0.072 0.928 33 H 0.051 0.949 34 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.763 -7.092 -0.556 9.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.183 4.183 3 Si 0.768 3.232 4 H -0.202 1.202 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.541 4.541 8 H 0.076 0.924 9 C 0.038 3.962 10 H 0.014 0.986 11 C -0.130 4.130 12 C 0.023 3.977 13 O -0.361 6.361 14 C -0.042 4.042 15 C -0.097 4.097 16 C -0.150 4.150 17 C -0.156 4.156 18 C -0.155 4.155 19 C -0.156 4.156 20 H 0.067 0.933 21 H 0.081 0.919 22 H 0.079 0.921 23 H 0.087 0.913 24 H 0.112 0.888 25 H 0.094 0.906 26 H 0.078 0.922 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.091 0.909 31 H 0.072 0.928 32 H 0.091 0.909 33 H 0.069 0.931 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.394 -7.013 -0.697 8.875 hybrid contribution 0.219 1.456 0.230 1.491 sum 5.613 -5.557 -0.468 7.912 Atomic orbital electron populations 1.69963 1.06579 1.26496 1.52142 1.25576 0.95571 1.01521 0.95673 0.85886 0.78459 0.80496 0.78346 1.20241 1.21764 1.20300 1.21413 0.92984 0.91152 1.48598 0.92376 1.18685 0.92652 0.93130 0.91763 0.98577 1.23880 0.96581 0.92648 0.99909 1.23613 0.92527 0.86964 0.94624 1.89511 1.45247 1.29317 1.72006 1.24107 0.84580 0.95460 1.00029 1.21922 0.95762 0.97061 0.94945 1.22492 0.95484 0.99915 0.97102 1.22350 0.97858 0.99964 0.95443 1.22084 0.96360 1.00628 0.96429 1.22159 0.95304 1.00649 0.97516 0.93287 0.91921 0.92092 0.91317 0.88829 0.90619 0.92163 0.92514 0.92498 0.91594 0.90879 0.92806 0.90928 0.93061 0.92717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.13 9.04 21.44 0.19 -48.93 16 2 C 0.01 0.76 5.30 84.65 0.45 1.21 16 3 Si 0.94 42.43 29.54 68.60 2.03 44.46 16 4 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 5 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 6 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 7 C -0.50 -25.39 6.46 25.60 0.17 -25.22 16 8 H 0.06 2.91 6.11 -2.91 -0.02 2.90 16 9 C 0.06 2.58 1.64 -11.54 -0.02 2.56 16 10 H 0.00 -0.20 7.81 -2.39 -0.02 -0.22 16 11 C -0.11 -5.00 2.66 -10.10 -0.03 -5.03 16 12 C 0.10 4.74 6.27 72.30 0.45 5.20 16 13 O -0.44 -20.03 12.46 -148.98 -1.86 -21.88 16 14 C 0.03 1.34 7.72 72.29 0.56 1.90 16 15 C -0.08 -2.93 2.45 -9.72 -0.02 -2.95 16 16 C -0.11 -3.86 5.65 31.88 0.18 -3.68 16 17 C -0.12 -3.27 6.83 31.67 0.22 -3.05 16 18 C -0.12 -3.36 6.80 31.32 0.21 -3.15 16 19 C -0.12 -4.15 6.07 31.32 0.19 -3.96 16 20 H 0.26 13.58 8.31 -92.70 -0.77 12.81 16 21 H 0.06 2.98 8.10 -2.39 -0.02 2.96 16 22 H 0.06 3.11 7.52 -2.39 -0.02 3.09 16 23 H 0.07 3.50 7.29 -2.39 -0.02 3.48 16 24 H 0.09 3.11 8.14 -2.39 -0.02 3.09 16 25 H 0.08 2.75 7.71 -2.39 -0.02 2.73 16 26 H 0.06 2.07 7.01 -2.38 -0.02 2.06 16 27 H 0.06 1.83 8.14 -2.38 -0.02 1.81 16 28 H 0.06 2.25 6.12 -2.39 -0.01 2.24 16 29 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.05 2.08 6.58 -2.39 -0.02 2.06 16 34 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -54.69 259.76 3.78 -50.91 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: 1.06 Total: 11.63 kcal Atomic # 6 Polarization: -38.53 SS G_CDS: 2.36 Total: -36.18 kcal Atomic # 7 Polarization: -49.13 SS G_CDS: 0.19 Total: -48.93 kcal Atomic # 8 Polarization: -20.03 SS G_CDS: -1.86 Total: -21.88 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.46 kcal Total: -54.69 3.78 -50.91 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260456960.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.585 kcal (2) G-P(sol) polarization free energy of solvation -54.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds