Wall clock time and date at job start Mon Mar 30 2020 02:56:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00168 * 2 1 4 4 H 1.48500 * 109.47247 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46781 * 299.99726 * 3 2 1 6 6 H 1.48494 * 109.47190 * 59.99703 * 3 2 1 7 7 C 1.37878 * 119.99593 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99515 * 185.03448 * 7 2 1 9 9 C 1.50695 * 120.00499 * 5.04375 * 7 2 1 10 10 H 1.09005 * 109.47075 * 4.96274 * 9 7 2 11 11 C 1.52998 * 109.47216 * 244.96630 * 9 7 2 12 12 C 1.53370 * 114.56778 * 54.37516 * 11 9 7 13 13 O 1.43350 * 88.44406 * 139.57843 * 12 11 9 14 14 C 1.43342 * 88.32360 * 331.85162 * 13 12 11 15 15 C 1.52996 * 109.47304 * 124.96137 * 9 7 2 16 16 C 1.54266 * 110.03653 * 297.90718 * 15 9 7 17 17 C 1.54962 * 104.16476 * 217.13757 * 16 15 9 18 18 C 1.54883 * 102.77659 * 37.88844 * 17 16 15 19 19 C 1.53877 * 110.03266 * 180.69330 * 15 9 7 20 20 H 0.97007 * 119.99951 * 0.02562 * 1 2 3 21 21 H 1.09000 * 113.56518 * 280.09910 * 11 9 7 22 22 H 1.09001 * 113.38777 * 24.68547 * 12 11 9 23 23 H 1.08995 * 113.43248 * 254.48584 * 12 11 9 24 24 H 1.09004 * 113.39556 * 143.05197 * 14 13 12 25 25 H 1.09007 * 113.38967 * 273.24792 * 14 13 12 26 26 H 1.08999 * 110.01645 * 59.30402 * 15 9 7 27 27 H 1.09002 * 110.48712 * 335.78849 * 16 15 9 28 28 H 1.09003 * 110.48393 * 98.42250 * 16 15 9 29 29 H 1.09001 * 110.71853 * 279.57281 * 17 16 15 30 30 H 1.09001 * 110.92393 * 156.29902 * 17 16 15 31 31 H 1.09003 * 110.49075 * 203.40857 * 18 17 16 32 32 H 1.08993 * 110.60429 * 80.82054 * 18 17 16 33 33 H 1.09003 * 110.02949 * 238.57216 * 19 15 9 34 34 H 1.09000 * 110.03076 * 359.94856 * 19 15 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0044 -1.1941 0.0005 8 1 3.0814 -1.1959 0.0826 9 6 1.2554 -2.4967 -0.1136 10 1 0.1965 -2.2940 -0.2749 11 6 1.4299 -3.3002 1.1767 12 6 1.0393 -2.5473 2.4545 13 8 0.4431 -3.7577 2.9387 14 6 0.2089 -4.1376 1.5765 15 6 1.8063 -3.3002 -1.2933 16 6 1.5892 -2.5241 -2.6087 17 6 1.2495 -3.6238 -3.6463 18 6 0.3802 -4.6103 -2.8276 19 6 1.0382 -4.6263 -1.4324 20 1 -0.4850 0.8401 -0.0004 21 1 2.3811 -3.8293 1.2352 22 1 0.3181 -1.7483 2.2826 23 1 1.8959 -2.2207 3.0441 24 1 0.3383 -5.2048 1.3964 25 1 -0.7293 -3.7538 1.1754 26 1 2.8682 -3.4974 -1.1469 27 1 0.7583 -1.8259 -2.5071 28 1 2.4991 -1.9965 -2.8949 29 1 2.1569 -4.1120 -4.0019 30 1 0.6829 -3.2103 -4.4805 31 1 0.4080 -5.6043 -3.2739 32 1 -0.6470 -4.2519 -2.7608 33 1 1.7277 -5.4670 -1.3543 34 1 0.2736 -4.6978 -0.6588 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260456970.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:22 Heat of formation + Delta-G solvation = -52.523814 kcal Electronic energy + Delta-G solvation = -14738.616723 eV Core-core repulsion = 12443.044921 eV Total energy + Delta-G solvation = -2295.571802 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.136 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.56244 -38.89323 -35.19650 -32.80589 -29.70149 -29.01337 -27.54425 -26.66240 -24.08546 -21.41292 -20.66492 -20.07101 -18.53733 -17.19785 -16.66601 -16.56810 -16.20107 -15.78101 -15.45492 -14.29679 -13.97181 -13.75906 -13.42456 -13.22310 -12.87831 -12.66500 -12.49348 -12.10287 -11.75982 -11.68746 -11.62906 -11.44943 -11.31010 -10.90262 -10.70730 -10.62401 -10.45182 -10.27029 -8.05801 -6.09951 1.38686 1.44098 1.51993 2.46092 3.23086 3.26867 3.74377 4.01676 4.05499 4.10291 4.28187 4.54205 4.64716 4.74345 4.78801 4.80864 4.91583 4.98363 5.03294 5.11594 5.15327 5.22252 5.25992 5.32648 5.36420 5.50524 5.52072 5.68829 5.70323 5.77523 5.97109 6.07115 6.48564 7.07063 7.54284 9.02214 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.021422 B = 0.015316 C = 0.009863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.744036 B = 1827.755875 C = 2838.092820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.027 3.973 3 Si 0.931 3.069 4 H -0.269 1.269 5 H -0.285 1.285 6 H -0.286 1.286 7 C -0.503 4.503 8 H 0.043 0.957 9 C 0.047 3.953 10 H 0.041 0.959 11 C -0.130 4.130 12 C 0.048 3.952 13 O -0.406 6.406 14 C 0.036 3.964 15 C -0.078 4.078 16 C -0.100 4.100 17 C -0.121 4.121 18 C -0.119 4.119 19 C -0.123 4.123 20 H 0.258 0.742 21 H 0.091 0.909 22 H 0.062 0.938 23 H 0.074 0.926 24 H 0.098 0.902 25 H 0.065 0.935 26 H 0.047 0.953 27 H 0.036 0.964 28 H 0.044 0.956 29 H 0.073 0.927 30 H 0.063 0.937 31 H 0.079 0.921 32 H 0.052 0.948 33 H 0.067 0.933 34 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.757 -7.561 -3.767 8.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.171 4.171 3 Si 0.759 3.241 4 H -0.193 1.193 5 H -0.211 1.211 6 H -0.212 1.212 7 C -0.542 4.542 8 H 0.062 0.938 9 C 0.028 3.972 10 H 0.059 0.941 11 C -0.148 4.148 12 C -0.029 4.029 13 O -0.326 6.326 14 C -0.040 4.040 15 C -0.097 4.097 16 C -0.138 4.138 17 C -0.159 4.159 18 C -0.156 4.156 19 C -0.161 4.161 20 H 0.067 0.933 21 H 0.109 0.891 22 H 0.080 0.920 23 H 0.092 0.908 24 H 0.117 0.883 25 H 0.083 0.917 26 H 0.066 0.934 27 H 0.055 0.945 28 H 0.063 0.937 29 H 0.092 0.908 30 H 0.081 0.919 31 H 0.098 0.902 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.560 -7.553 -3.491 8.466 hybrid contribution 0.329 1.538 0.097 1.575 sum 1.889 -6.015 -3.395 7.161 Atomic orbital electron populations 1.70007 1.06850 1.26716 1.52472 1.25446 0.95286 1.01363 0.95044 0.85918 0.79528 0.81443 0.77259 1.19326 1.21123 1.21245 1.21241 0.92765 0.91646 1.48519 0.93838 1.18965 0.97446 0.91672 0.89099 0.94103 1.23891 0.97515 0.95986 0.97448 1.23466 0.96746 0.88125 0.94559 1.89656 1.81689 1.35398 1.25870 1.23870 0.98350 1.00792 0.80993 1.21805 0.98082 0.94158 0.95689 1.22122 0.99592 0.97079 0.95007 1.22528 0.99773 0.96382 0.97174 1.22310 0.98464 0.99469 0.95366 1.22336 0.99343 0.97099 0.97313 0.93295 0.89117 0.91968 0.90760 0.88349 0.91695 0.93424 0.94520 0.93727 0.90814 0.91851 0.90201 0.92923 0.91393 0.92199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.24 12.63 21.45 0.27 -50.96 16 2 C 0.03 1.43 5.45 84.66 0.46 1.89 16 3 Si 0.93 42.63 29.54 68.60 2.03 44.65 16 4 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 5 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 6 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 7 C -0.50 -25.67 7.03 25.60 0.18 -25.49 16 8 H 0.04 2.25 7.82 -2.91 -0.02 2.23 16 9 C 0.05 2.13 1.39 -11.54 -0.02 2.12 16 10 H 0.04 2.13 6.58 -2.38 -0.02 2.11 16 11 C -0.13 -5.30 3.25 -10.55 -0.03 -5.33 16 12 C 0.05 2.07 7.66 63.84 0.49 2.56 16 13 O -0.41 -17.07 12.74 -148.98 -1.90 -18.97 16 14 C 0.04 1.36 6.40 63.84 0.41 1.77 16 15 C -0.08 -3.04 2.48 -10.07 -0.02 -3.06 16 16 C -0.10 -3.89 5.75 31.69 0.18 -3.71 16 17 C -0.12 -3.61 6.91 31.91 0.22 -3.39 16 18 C -0.12 -3.37 6.83 31.67 0.22 -3.16 16 19 C -0.12 -3.90 6.03 31.32 0.19 -3.71 16 20 H 0.26 13.89 8.31 -92.70 -0.77 13.12 16 21 H 0.09 3.49 8.11 -2.39 -0.02 3.47 16 22 H 0.06 3.07 8.11 -2.39 -0.02 3.05 16 23 H 0.07 3.07 8.14 -2.39 -0.02 3.05 16 24 H 0.10 3.05 7.85 -2.39 -0.02 3.03 16 25 H 0.06 2.54 7.86 -2.38 -0.02 2.52 16 26 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 27 H 0.04 1.67 7.84 -2.39 -0.02 1.65 16 28 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.06 1.93 5.15 -2.39 -0.01 1.92 16 Total: -1.00 -55.91 268.19 3.72 -52.19 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: 1.05 Total: 12.61 kcal Atomic # 6 Polarization: -41.79 SS G_CDS: 2.27 Total: -39.52 kcal Atomic # 7 Polarization: -51.24 SS G_CDS: 0.27 Total: -50.96 kcal Atomic # 8 Polarization: -17.07 SS G_CDS: -1.90 Total: -18.97 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.65 kcal Total: -55.91 3.72 -52.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260456970.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.336 kcal (2) G-P(sol) polarization free energy of solvation -55.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds