Wall clock time and date at job start Mon Mar 30 2020 02:53:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99734 * 2 1 4 4 H 1.48503 * 109.47033 * 269.99754 * 3 2 1 5 5 H 1.48494 * 109.47308 * 30.00070 * 3 2 1 6 6 H 1.48502 * 109.47024 * 150.00173 * 3 2 1 7 7 C 1.37870 * 119.99909 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00433 * 0.02562 * 7 2 1 9 9 C 1.50704 * 119.99765 * 179.97438 * 7 2 1 10 10 C 1.53005 * 109.46982 * 185.28906 * 9 7 2 11 11 H 1.09000 * 109.47190 * 306.39328 * 10 9 7 12 12 C 1.53005 * 109.46781 * 186.39463 * 10 9 7 13 13 C 1.53781 * 113.60770 * 157.49559 * 12 10 9 14 14 C 1.53781 * 87.07898 * 220.01658 * 13 12 10 15 15 C 1.53770 * 113.61516 * 60.00060 * 12 10 9 16 16 C 1.53002 * 109.47236 * 66.39549 * 10 9 7 17 17 H 1.08998 * 112.68008 * 65.36865 * 16 10 9 18 18 C 1.53366 * 113.38916 * 195.94423 * 16 10 9 19 19 C 1.53372 * 81.25782 * 141.38030 * 18 16 10 20 20 O 1.43344 * 88.44913 * 333.51388 * 19 18 16 21 21 H 0.97001 * 119.99841 * 359.97438 * 1 2 3 22 22 H 1.08993 * 109.47304 * 65.29046 * 9 7 2 23 23 H 1.08998 * 109.47331 * 305.28290 * 9 7 2 24 24 H 1.08994 * 112.84965 * 288.79511 * 12 10 9 25 25 H 1.08999 * 113.61807 * 334.56552 * 13 12 10 26 26 H 1.09006 * 113.61307 * 105.47625 * 13 12 10 27 27 H 1.08998 * 113.61784 * 270.88645 * 14 13 12 28 28 H 1.08995 * 113.61474 * 139.98464 * 14 13 12 29 29 H 1.09004 * 113.61569 * 254.52841 * 15 12 10 30 30 H 1.09004 * 113.61752 * 25.34757 * 15 12 10 31 31 H 1.09001 * 114.56611 * 254.47435 * 18 16 10 32 32 H 1.08998 * 114.56731 * 28.29168 * 18 16 10 33 33 H 1.09000 * 113.38729 * 218.61042 * 19 18 16 34 34 H 1.08998 * 113.43107 * 88.41984 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0215 -2.6305 -0.1323 11 1 3.5681 -3.2497 0.6417 12 6 5.5432 -2.6480 0.0269 13 6 6.1018 -4.0151 0.4557 14 6 7.0670 -3.2451 1.3723 15 6 6.0267 -2.1126 1.3848 16 6 3.6464 -3.1801 -1.5100 17 1 4.1485 -2.6553 -2.3228 18 6 3.7590 -4.7065 -1.6078 19 6 2.4877 -4.5124 -2.4436 20 8 2.2322 -3.3109 -1.7048 21 1 -0.4850 0.8401 0.0004 22 1 3.8752 -0.7638 0.9330 23 1 3.8746 -0.6009 -0.8395 24 1 6.0629 -2.2104 -0.8253 25 1 5.3829 -4.6303 0.9969 26 1 6.6011 -4.5547 -0.3491 27 1 8.0044 -2.9716 0.8881 28 1 7.2132 -3.7144 2.3451 29 1 6.4653 -1.1162 1.3302 30 1 5.2869 -2.2063 2.1798 31 1 4.6217 -5.0621 -2.1711 32 1 3.6060 -5.2334 -0.6661 33 1 1.7398 -5.2883 -2.2801 34 1 2.6866 -4.3364 -3.5007 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260573034.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:13 Heat of formation + Delta-G solvation = -23.282945 kcal Electronic energy + Delta-G solvation = -14541.754337 eV Core-core repulsion = 12247.450515 eV Total energy + Delta-G solvation = -2294.303822 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.136 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.65728 -39.52776 -35.41904 -33.43397 -30.79446 -28.66618 -26.56794 -25.77082 -24.21946 -21.97497 -21.10696 -20.11823 -18.81045 -17.21134 -16.78719 -16.48500 -16.30580 -15.72199 -15.09773 -14.70510 -14.07022 -13.75579 -13.44768 -13.36456 -13.13609 -12.84492 -12.70456 -12.47542 -11.94689 -11.78824 -11.61625 -11.44002 -11.21126 -11.10154 -10.76148 -10.69101 -10.54208 -10.28670 -8.16604 -6.15328 1.33169 1.35033 1.46756 2.40873 3.14273 3.29329 3.44206 3.84410 3.85538 3.97725 4.10811 4.15797 4.39675 4.43564 4.62263 4.68019 4.77439 4.87678 4.97530 5.00008 5.02836 5.05344 5.14904 5.19236 5.24985 5.28563 5.43954 5.49949 5.60979 5.68487 5.83006 5.83185 6.49853 6.97363 7.45070 9.01097 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.025118 B = 0.012609 C = 0.008973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.457814 B = 2220.023033 C = 3119.782961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.960 5.960 2 C -0.006 4.006 3 Si 0.943 3.057 4 H -0.273 1.273 5 H -0.288 1.288 6 H -0.247 1.247 7 C -0.495 4.495 8 H 0.043 0.957 9 C -0.003 4.003 10 C -0.059 4.059 11 H 0.049 0.951 12 C -0.105 4.105 13 C -0.125 4.125 14 C -0.130 4.130 15 C -0.144 4.144 16 C 0.067 3.933 17 H 0.080 0.920 18 C -0.155 4.155 19 C 0.004 3.996 20 O -0.385 6.385 21 H 0.259 0.741 22 H 0.016 0.984 23 H 0.008 0.992 24 H 0.093 0.907 25 H 0.074 0.926 26 H 0.083 0.917 27 H 0.092 0.908 28 H 0.072 0.928 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.105 0.895 32 H 0.093 0.907 33 H 0.082 0.918 34 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.730 -8.714 -1.903 18.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.201 4.201 3 Si 0.767 3.233 4 H -0.198 1.198 5 H -0.214 1.214 6 H -0.171 1.171 7 C -0.534 4.534 8 H 0.061 0.939 9 C -0.040 4.040 10 C -0.078 4.078 11 H 0.068 0.932 12 C -0.123 4.123 13 C -0.163 4.163 14 C -0.167 4.167 15 C -0.181 4.181 16 C 0.010 3.990 17 H 0.097 0.903 18 C -0.192 4.192 19 C -0.073 4.073 20 O -0.305 6.305 21 H 0.068 0.932 22 H 0.035 0.965 23 H 0.026 0.974 24 H 0.112 0.888 25 H 0.092 0.908 26 H 0.102 0.898 27 H 0.111 0.889 28 H 0.091 0.909 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.123 0.877 32 H 0.112 0.888 33 H 0.101 0.899 34 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 15.359 -8.453 -1.817 17.626 hybrid contribution -0.629 1.030 -0.064 1.209 sum 14.730 -7.423 -1.882 16.602 Atomic orbital electron populations 1.70106 1.08225 1.27256 1.54657 1.25981 0.95536 1.03071 0.95477 0.85771 0.79607 0.79184 0.78735 1.19808 1.21365 1.17074 1.21549 0.91918 0.93155 1.46742 0.93898 1.19514 0.94122 0.94639 0.95752 1.21123 0.94988 0.96461 0.95244 0.93218 1.22543 0.92965 0.98712 0.98085 1.22909 0.98402 0.95277 0.99666 1.22788 0.97185 0.96356 1.00370 1.22927 0.98919 0.98963 0.97337 1.23216 0.82099 0.96291 0.97401 0.90260 1.24230 0.98765 0.95121 1.01098 1.23752 0.97914 0.88666 0.96988 1.90336 1.24339 1.43836 1.71952 0.93215 0.96545 0.97353 0.88834 0.90759 0.89833 0.88907 0.90924 0.92025 0.91680 0.87657 0.88845 0.89934 0.89646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -64.18 13.96 21.45 0.30 -63.88 16 2 C -0.01 -0.40 5.47 84.65 0.46 0.07 16 3 Si 0.94 47.15 27.37 68.60 1.88 49.02 16 4 H -0.27 -13.20 7.11 99.48 0.71 -12.49 16 5 H -0.29 -14.13 7.11 99.48 0.71 -13.43 16 6 H -0.25 -11.41 6.70 99.48 0.67 -10.75 16 7 C -0.50 -30.10 8.45 25.60 0.22 -29.88 16 8 H 0.04 2.92 6.58 -2.91 -0.02 2.90 16 9 C 0.00 -0.14 3.41 29.85 0.10 -0.04 16 10 C -0.06 -2.31 1.59 -10.79 -0.02 -2.33 16 11 H 0.05 2.10 7.90 -2.39 -0.02 2.08 16 12 C -0.10 -3.01 3.11 -10.27 -0.03 -3.05 16 13 C -0.13 -2.77 6.76 31.12 0.21 -2.56 16 14 C -0.13 -2.67 8.08 31.12 0.25 -2.42 16 15 C -0.14 -4.00 6.56 31.12 0.20 -3.80 16 16 C 0.07 2.48 3.36 22.45 0.08 2.56 16 17 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 18 C -0.16 -4.18 7.28 30.84 0.22 -3.95 16 19 C 0.00 0.12 8.73 63.84 0.56 0.67 16 20 O -0.39 -17.90 9.94 -148.98 -1.48 -19.38 16 21 H 0.26 16.24 8.31 -92.71 -0.77 15.47 16 22 H 0.02 0.79 6.66 -2.39 -0.02 0.77 16 23 H 0.01 0.40 7.28 -2.39 -0.02 0.38 16 24 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 25 H 0.07 1.73 7.96 -2.39 -0.02 1.71 16 26 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 27 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.06 1.68 8.14 -2.38 -0.02 1.67 16 30 H 0.06 2.03 8.10 -2.39 -0.02 2.01 16 31 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.09 2.50 8.10 -2.39 -0.02 2.48 16 33 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 34 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 Total: -1.00 -73.77 269.14 3.96 -69.81 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: 1.01 Total: 9.15 kcal Atomic # 6 Polarization: -46.98 SS G_CDS: 2.26 Total: -44.73 kcal Atomic # 7 Polarization: -64.18 SS G_CDS: 0.30 Total: -63.88 kcal Atomic # 8 Polarization: -17.90 SS G_CDS: -1.48 Total: -19.38 kcal Atomic # 14 Polarization: 47.15 SS G_CDS: 1.88 Total: 49.02 kcal Total: -73.77 3.96 -69.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260573034.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.532 kcal (2) G-P(sol) polarization free energy of solvation -73.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds