Wall clock time and date at job start Mon Mar 30 2020 02:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86797 * 119.99684 * 2 1 4 4 H 1.48497 * 109.47215 * 269.99930 * 3 2 1 5 5 H 1.48498 * 109.47417 * 30.00339 * 3 2 1 6 6 H 1.48506 * 109.46776 * 150.00332 * 3 2 1 7 7 C 1.37875 * 119.99832 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99584 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00216 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47118 * 185.24804 * 9 7 2 11 11 H 1.09002 * 109.46939 * 306.12911 * 10 9 7 12 12 C 1.53000 * 109.47031 * 186.13382 * 10 9 7 13 13 C 1.53776 * 113.61393 * 180.02562 * 12 10 9 14 14 C 1.53784 * 87.17248 * 219.89246 * 13 12 10 15 15 C 1.53778 * 113.69082 * 82.46192 * 12 10 9 16 16 C 1.52996 * 109.47265 * 66.12980 * 10 9 7 17 17 H 1.09003 * 112.68152 * 44.78626 * 16 10 9 18 18 C 1.53362 * 113.39556 * 274.27264 * 16 10 9 19 19 C 1.53457 * 81.23115 * 218.62980 * 18 16 10 20 20 O 1.43341 * 88.46381 * 26.44649 * 19 18 16 21 21 H 0.96996 * 120.00016 * 359.97438 * 1 2 3 22 22 H 1.08998 * 109.46769 * 65.24680 * 9 7 2 23 23 H 1.08999 * 109.46767 * 305.24652 * 9 7 2 24 24 H 1.09003 * 112.84696 * 311.19464 * 12 10 9 25 25 H 1.09006 * 113.61427 * 334.47539 * 13 12 10 26 26 H 1.08999 * 113.62126 * 105.29798 * 13 12 10 27 27 H 1.08997 * 113.61720 * 140.02021 * 14 13 12 28 28 H 1.09001 * 113.61047 * 270.92729 * 14 13 12 29 29 H 1.08993 * 113.61435 * 254.53758 * 15 12 10 30 30 H 1.08998 * 113.61444 * 25.36277 * 15 12 10 31 31 H 1.09005 * 114.56476 * 331.70424 * 18 16 10 32 32 H 1.08995 * 114.57277 * 105.51864 * 18 16 10 33 33 H 1.08998 * 113.34705 * 271.54864 * 19 18 16 34 34 H 1.09004 * 113.46270 * 141.37188 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2401 -3.6591 0.1308 11 1 3.0002 -3.5781 -0.6463 12 6 1.4935 -4.9857 -0.0225 13 6 2.4020 -6.2209 0.0946 14 6 1.5827 -6.8377 -1.0514 15 6 1.2561 -5.3957 -1.4855 16 6 2.9088 -3.6060 1.5058 17 1 2.1991 -3.4171 2.3113 18 6 4.1381 -2.6901 1.5502 19 6 4.6566 -3.8213 2.4483 20 8 3.7757 -4.7189 1.7606 21 1 -0.4850 0.8400 0.0004 22 1 0.6964 -2.5984 -0.9336 23 1 0.5561 -2.5174 0.8390 24 1 0.5987 -5.0419 0.5975 25 1 3.4416 -6.0249 -0.1684 26 1 2.2977 -6.7517 1.0409 27 1 2.1867 -7.3867 -1.7738 28 1 0.7120 -7.3991 -0.7125 29 1 0.2259 -5.2614 -1.8148 30 1 1.9814 -4.9728 -2.1806 31 1 4.6627 -2.5893 0.6000 32 1 3.9782 -1.7414 2.0624 33 1 4.4039 -3.6881 3.5001 34 1 5.7117 -4.0481 2.2950 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260573036.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:15 Heat of formation + Delta-G solvation = -10.685485 kcal Electronic energy + Delta-G solvation = -14515.698814 eV Core-core repulsion = 12221.941258 eV Total energy + Delta-G solvation = -2293.757556 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.27912 -38.01953 -33.70635 -31.41664 -28.98671 -26.58853 -25.22524 -24.38983 -22.87588 -20.42951 -19.56599 -18.77007 -16.23988 -15.86884 -15.31839 -15.16878 -14.55548 -14.25679 -13.96610 -12.36606 -12.11568 -12.04260 -11.91149 -11.77752 -11.43328 -11.29263 -11.00157 -10.79572 -10.46931 -10.40875 -10.13875 -9.90381 -9.84376 -9.31933 -9.16191 -8.87560 -8.72034 -8.33186 -5.98542 -3.99928 3.30693 3.37837 3.39341 4.45691 4.53972 4.97289 5.17671 5.23799 5.32098 5.37712 5.45278 5.52001 5.72367 5.86229 6.01732 6.10143 6.21271 6.34027 6.37181 6.40575 6.42731 6.51574 6.58686 6.65061 6.72324 6.84217 6.93946 7.13124 7.27832 7.71179 7.82772 8.01673 8.44158 9.06721 9.63578 11.12723 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.030583 B = 0.010554 C = 0.008325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.331587 B = 2652.281787 C = 3362.697011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.886 3.114 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.274 1.274 7 C -0.516 4.516 8 H 0.060 0.940 9 C 0.030 3.970 10 C -0.069 4.069 11 H 0.062 0.938 12 C -0.100 4.100 13 C -0.120 4.120 14 C -0.150 4.150 15 C -0.132 4.132 16 C 0.083 3.917 17 H 0.081 0.919 18 C -0.164 4.164 19 C 0.017 3.983 20 O -0.373 6.373 21 H 0.259 0.741 22 H 0.018 0.982 23 H 0.019 0.981 24 H 0.079 0.921 25 H 0.080 0.920 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.071 0.929 29 H 0.060 0.940 30 H 0.077 0.923 31 H 0.091 0.909 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.594 -8.328 1.749 10.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.714 3.286 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.199 1.199 7 C -0.554 4.554 8 H 0.079 0.921 9 C -0.007 4.007 10 C -0.087 4.087 11 H 0.081 0.919 12 C -0.119 4.119 13 C -0.157 4.157 14 C -0.187 4.187 15 C -0.169 4.169 16 C 0.026 3.974 17 H 0.099 0.901 18 C -0.201 4.201 19 C -0.060 4.060 20 O -0.292 6.292 21 H 0.069 0.931 22 H 0.036 0.964 23 H 0.038 0.962 24 H 0.097 0.903 25 H 0.099 0.901 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.089 0.911 29 H 0.079 0.921 30 H 0.095 0.905 31 H 0.109 0.891 32 H 0.097 0.903 33 H 0.086 0.914 34 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 5.433 -8.500 1.692 10.229 hybrid contribution 0.362 1.234 0.073 1.288 sum 5.796 -7.266 1.765 9.460 Atomic orbital electron populations 1.69965 1.06011 1.26430 1.51099 1.25009 0.94754 0.99052 0.95586 0.86698 0.79897 0.83959 0.78079 1.20787 1.21357 1.19888 1.21349 0.93236 0.90827 1.50033 0.92141 1.19083 0.93533 0.90745 0.97384 1.21406 0.98226 0.95113 0.93967 0.91936 1.22489 0.98472 0.94691 0.96211 1.22780 0.98815 0.96778 0.97322 1.22957 1.00020 0.96617 0.99154 1.22926 1.01211 0.95462 0.97298 1.23137 0.92714 0.83128 0.98443 0.90124 1.24220 0.97057 0.98663 1.00187 1.23576 0.95586 0.90210 0.96648 1.89854 1.36619 1.29206 1.73514 0.93116 0.96378 0.96241 0.90260 0.90110 0.92464 0.92450 0.91078 0.92137 0.90460 0.89069 0.90260 0.91440 0.90901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.44 13.29 55.43 0.74 -25.70 16 2 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.52 -13.83 8.26 -34.44 -0.28 -14.11 16 8 H 0.06 1.55 5.86 -52.49 -0.31 1.24 16 9 C 0.03 0.74 4.43 -27.88 -0.12 0.62 16 10 C -0.07 -1.41 1.71 -90.62 -0.15 -1.56 16 11 H 0.06 1.32 7.71 -51.93 -0.40 0.92 16 12 C -0.10 -1.83 3.12 -89.81 -0.28 -2.11 16 13 C -0.12 -1.95 5.65 -25.92 -0.15 -2.09 16 14 C -0.15 -2.18 8.10 -25.75 -0.21 -2.39 16 15 C -0.13 -2.19 7.64 -25.76 -0.20 -2.38 16 16 C 0.08 1.59 3.27 -39.30 -0.13 1.46 16 17 H 0.08 1.60 8.12 -51.93 -0.42 1.18 16 18 C -0.16 -2.91 6.01 -26.31 -0.16 -3.06 16 19 C 0.02 0.26 8.74 24.64 0.22 0.48 16 20 O -0.37 -6.69 9.77 -35.23 -0.34 -7.04 16 21 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 22 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.02 0.52 8.13 -51.93 -0.42 0.10 16 24 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 25 H 0.08 1.37 7.43 -51.93 -0.39 0.99 16 26 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.08 1.30 7.97 -51.93 -0.41 0.88 16 31 H 0.09 1.63 7.75 -51.93 -0.40 1.23 16 32 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 33 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 LS Contribution 270.85 15.07 4.08 4.08 Total: -1.00 -28.50 270.85 -7.80 -36.30 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -5.69 Total: -0.15 kcal Atomic # 6 Polarization: -22.11 SS G_CDS: -1.56 Total: -23.67 kcal Atomic # 7 Polarization: -26.44 SS G_CDS: 0.74 Total: -25.70 kcal Atomic # 8 Polarization: -6.69 SS G_CDS: -0.34 Total: -7.04 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -28.50 -7.80 -36.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260573036.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.613 kcal (2) G-P(sol) polarization free energy of solvation -28.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds