Wall clock time and date at job start Mon Mar 30 2020 02:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86797 * 119.99684 * 2 1 4 4 H 1.48497 * 109.47215 * 269.99930 * 3 2 1 5 5 H 1.48498 * 109.47417 * 30.00339 * 3 2 1 6 6 H 1.48506 * 109.46776 * 150.00332 * 3 2 1 7 7 C 1.37875 * 119.99832 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99584 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00216 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47118 * 185.24804 * 9 7 2 11 11 H 1.09002 * 109.46939 * 306.12911 * 10 9 7 12 12 C 1.53000 * 109.47031 * 186.13382 * 10 9 7 13 13 C 1.53776 * 113.61393 * 180.02562 * 12 10 9 14 14 C 1.53784 * 87.17248 * 219.89246 * 13 12 10 15 15 C 1.53778 * 113.69082 * 82.46192 * 12 10 9 16 16 C 1.52996 * 109.47265 * 66.12980 * 10 9 7 17 17 H 1.09003 * 112.68152 * 44.78626 * 16 10 9 18 18 C 1.53362 * 113.39556 * 274.27264 * 16 10 9 19 19 C 1.53457 * 81.23115 * 218.62980 * 18 16 10 20 20 O 1.43341 * 88.46381 * 26.44649 * 19 18 16 21 21 H 0.96996 * 120.00016 * 359.97438 * 1 2 3 22 22 H 1.08998 * 109.46769 * 65.24680 * 9 7 2 23 23 H 1.08999 * 109.46767 * 305.24652 * 9 7 2 24 24 H 1.09003 * 112.84696 * 311.19464 * 12 10 9 25 25 H 1.09006 * 113.61427 * 334.47539 * 13 12 10 26 26 H 1.08999 * 113.62126 * 105.29798 * 13 12 10 27 27 H 1.08997 * 113.61720 * 140.02021 * 14 13 12 28 28 H 1.09001 * 113.61047 * 270.92729 * 14 13 12 29 29 H 1.08993 * 113.61435 * 254.53758 * 15 12 10 30 30 H 1.08998 * 113.61444 * 25.36277 * 15 12 10 31 31 H 1.09005 * 114.56476 * 331.70424 * 18 16 10 32 32 H 1.08995 * 114.57277 * 105.51864 * 18 16 10 33 33 H 1.08998 * 113.34705 * 271.54864 * 19 18 16 34 34 H 1.09004 * 113.46270 * 141.37188 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2401 -3.6591 0.1308 11 1 3.0002 -3.5781 -0.6463 12 6 1.4935 -4.9857 -0.0225 13 6 2.4020 -6.2209 0.0946 14 6 1.5827 -6.8377 -1.0514 15 6 1.2561 -5.3957 -1.4855 16 6 2.9088 -3.6060 1.5058 17 1 2.1991 -3.4171 2.3113 18 6 4.1381 -2.6901 1.5502 19 6 4.6566 -3.8213 2.4483 20 8 3.7757 -4.7189 1.7606 21 1 -0.4850 0.8400 0.0004 22 1 0.6964 -2.5984 -0.9336 23 1 0.5561 -2.5174 0.8390 24 1 0.5987 -5.0419 0.5975 25 1 3.4416 -6.0249 -0.1684 26 1 2.2977 -6.7517 1.0409 27 1 2.1867 -7.3867 -1.7738 28 1 0.7120 -7.3991 -0.7125 29 1 0.2259 -5.2614 -1.8148 30 1 1.9814 -4.9728 -2.1806 31 1 4.6627 -2.5893 0.6000 32 1 3.9782 -1.7414 2.0624 33 1 4.4039 -3.6881 3.5001 34 1 5.7117 -4.0481 2.2950 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260573036.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:15 Heat of formation + Delta-G solvation = -26.240816 kcal Electronic energy + Delta-G solvation = -14516.373344 eV Core-core repulsion = 12221.941258 eV Total energy + Delta-G solvation = -2294.432085 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.71792 -39.39004 -35.64757 -33.31674 -30.39177 -28.48950 -26.62860 -25.72661 -24.68060 -21.94704 -21.18006 -20.14258 -18.32179 -17.33756 -16.71392 -16.68426 -16.31343 -15.78002 -15.40708 -14.26321 -13.67791 -13.55845 -13.47438 -13.17794 -13.12646 -12.83150 -12.79691 -12.49169 -12.23827 -11.95340 -11.76790 -11.44652 -11.24940 -11.03503 -10.73081 -10.54762 -10.44806 -10.29775 -8.13163 -6.21433 1.41693 1.42096 1.52306 2.44033 3.11840 3.23162 3.56951 3.79306 3.89696 3.97300 4.12113 4.18327 4.42826 4.47779 4.63362 4.71936 4.82310 4.92588 4.98733 5.01863 5.08482 5.12915 5.15033 5.23579 5.28104 5.36426 5.42305 5.54798 5.64374 5.70802 5.83951 5.91298 6.32648 6.94404 7.46573 8.98808 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.030583 B = 0.010554 C = 0.008325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.331587 B = 2652.281787 C = 3362.697011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.001 4.001 3 Si 0.953 3.047 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.258 1.258 7 C -0.522 4.522 8 H 0.072 0.928 9 C 0.039 3.961 10 C -0.059 4.059 11 H 0.056 0.944 12 C -0.112 4.112 13 C -0.109 4.109 14 C -0.132 4.132 15 C -0.137 4.137 16 C 0.080 3.920 17 H 0.069 0.931 18 C -0.168 4.168 19 C 0.027 3.973 20 O -0.377 6.377 21 H 0.260 0.740 22 H -0.010 1.010 23 H -0.010 1.010 24 H 0.069 0.931 25 H 0.076 0.924 26 H 0.060 0.940 27 H 0.077 0.923 28 H 0.085 0.915 29 H 0.056 0.944 30 H 0.073 0.927 31 H 0.089 0.911 32 H 0.071 0.929 33 H 0.085 0.915 34 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.439 -8.989 2.006 11.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.198 4.198 3 Si 0.778 3.222 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.182 1.182 7 C -0.561 4.561 8 H 0.090 0.910 9 C 0.001 3.999 10 C -0.077 4.077 11 H 0.075 0.925 12 C -0.131 4.131 13 C -0.146 4.146 14 C -0.169 4.169 15 C -0.174 4.174 16 C 0.022 3.978 17 H 0.086 0.914 18 C -0.206 4.206 19 C -0.050 4.050 20 O -0.297 6.297 21 H 0.068 0.932 22 H 0.008 0.992 23 H 0.009 0.991 24 H 0.087 0.913 25 H 0.095 0.905 26 H 0.079 0.921 27 H 0.096 0.904 28 H 0.103 0.897 29 H 0.075 0.925 30 H 0.092 0.908 31 H 0.107 0.893 32 H 0.090 0.910 33 H 0.103 0.897 34 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 7.301 -9.176 1.952 11.888 hybrid contribution -0.237 1.429 -0.001 1.449 sum 7.064 -7.747 1.952 10.664 Atomic orbital electron populations 1.70111 1.07794 1.27318 1.52557 1.25898 0.95549 1.02959 0.95380 0.85621 0.79047 0.79258 0.78232 1.20356 1.21375 1.18173 1.21748 0.93930 0.91484 1.48888 0.90974 1.18913 0.93747 0.92586 0.94613 1.21187 0.97126 0.94552 0.94884 0.92511 1.22537 0.98581 0.94469 0.97486 1.22667 0.98245 0.95453 0.98278 1.22888 1.00311 0.95303 0.98391 1.22956 1.00998 0.97386 0.96080 1.22991 0.93223 0.84573 0.97006 0.91352 1.24206 0.96535 0.98929 1.00890 1.23712 0.96664 0.87761 0.96814 1.89834 1.36742 1.29060 1.74051 0.93171 0.99179 0.99145 0.91266 0.90529 0.92142 0.90395 0.89672 0.92488 0.90824 0.89256 0.91043 0.89674 0.88071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.67 13.29 21.45 0.28 -56.39 16 2 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 3 Si 0.95 43.48 29.54 68.60 2.03 45.51 16 4 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 5 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 6 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 7 C -0.52 -28.34 8.26 25.60 0.21 -28.13 16 8 H 0.07 3.67 5.86 -2.91 -0.02 3.65 16 9 C 0.04 2.00 4.43 29.85 0.13 2.13 16 10 C -0.06 -2.45 1.71 -10.79 -0.02 -2.46 16 11 H 0.06 2.41 7.71 -2.39 -0.02 2.39 16 12 C -0.11 -4.09 3.12 -10.27 -0.03 -4.12 16 13 C -0.11 -3.36 5.65 31.12 0.18 -3.19 16 14 C -0.13 -3.51 8.10 31.23 0.25 -3.26 16 15 C -0.14 -4.47 7.64 31.23 0.24 -4.24 16 16 C 0.08 3.02 3.27 22.45 0.07 3.10 16 17 H 0.07 2.76 8.12 -2.39 -0.02 2.74 16 18 C -0.17 -5.74 6.01 30.87 0.19 -5.55 16 19 C 0.03 0.75 8.74 63.87 0.56 1.31 16 20 O -0.38 -12.83 9.77 -148.98 -1.46 -14.29 16 21 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 22 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 23 H -0.01 -0.56 8.13 -2.39 -0.02 -0.58 16 24 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 25 H 0.08 2.44 7.43 -2.38 -0.02 2.42 16 26 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 29 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.07 2.44 7.97 -2.39 -0.02 2.42 16 31 H 0.09 3.06 7.75 -2.38 -0.02 3.04 16 32 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 33 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 Total: -1.00 -61.14 270.85 4.14 -57.00 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: 1.05 Total: 12.17 kcal Atomic # 6 Polarization: -46.24 SS G_CDS: 2.24 Total: -44.00 kcal Atomic # 7 Polarization: -56.67 SS G_CDS: 0.28 Total: -56.39 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: -1.46 Total: -14.29 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Total: -61.14 4.14 -57.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260573036.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.758 kcal (2) G-P(sol) polarization free energy of solvation -61.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds