Wall clock time and date at job start Mon Mar 30 2020 02:37:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.31384 * 127.04257 * 2 1 4 4 N 1.28603 * 108.71630 * 180.02562 * 3 2 1 5 5 C 1.46498 * 124.62184 * 179.97438 * 4 3 2 6 6 N 1.28602 * 110.75857 * 359.74890 * 4 3 2 7 7 C 1.31371 * 108.72057 * 0.41316 * 6 4 3 8 8 C 1.50710 * 127.05097 * 179.86804 * 7 6 4 9 9 H 1.08994 * 109.47115 * 179.68706 * 8 7 6 10 10 C 1.50700 * 109.46750 * 59.68351 * 8 7 6 11 11 H 1.07992 * 120.00021 * 275.01086 * 10 8 7 12 12 C 1.37882 * 119.99753 * 95.01884 * 10 8 7 13 13 N 1.31507 * 119.99937 * 5.61347 * 12 10 8 14 14 Si 1.86797 * 119.99652 * 185.61544 * 12 10 8 15 15 H 1.48497 * 109.47535 * 89.99742 * 14 12 10 16 16 H 1.48504 * 109.46936 * 210.00048 * 14 12 10 17 17 H 1.48503 * 109.47306 * 329.99171 * 14 12 10 18 18 C 1.52999 * 109.47037 * 299.68365 * 8 7 6 19 19 N 1.46899 * 109.46966 * 185.30361 * 18 8 7 20 20 H 1.08998 * 109.47148 * 269.96970 * 1 2 3 21 21 H 1.08996 * 109.47914 * 29.97350 * 1 2 3 22 22 H 1.09011 * 109.46973 * 149.97306 * 1 2 3 23 23 H 1.09007 * 109.46611 * 90.02337 * 5 4 3 24 24 H 1.08997 * 109.47413 * 210.02558 * 5 4 3 25 25 H 1.08993 * 109.47057 * 330.03102 * 5 4 3 26 26 H 0.97005 * 119.99907 * 180.02562 * 13 12 10 27 27 H 1.09004 * 109.47239 * 65.30525 * 18 8 7 28 28 H 1.09002 * 109.47116 * 305.30568 * 18 8 7 29 29 H 1.00897 * 110.99669 * 56.04912 * 19 18 8 30 30 H 1.00904 * 110.99692 * 180.02562 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2984 1.0487 0.0000 4 7 3.5192 0.6443 -0.0005 5 6 4.6884 1.5270 -0.0013 6 7 3.5738 -0.6405 0.0044 7 6 2.3486 -1.1146 -0.0006 8 6 1.9358 -2.5641 -0.0005 9 1 0.8480 -2.6320 0.0002 10 6 2.4823 -3.2418 1.2296 11 1 3.4880 -3.6353 1.2275 12 6 1.6982 -3.3596 2.3576 13 7 0.4392 -2.9811 2.3257 14 14 2.4244 -4.0570 3.9311 15 1 2.9942 -2.9533 4.7450 16 1 1.3598 -4.7444 4.7053 17 1 3.4963 -5.0278 3.5938 18 6 2.4890 -3.2520 -1.2501 19 7 1.9824 -4.6293 -1.3156 20 1 -0.3633 -0.0005 1.0276 21 1 -0.3635 0.8901 -0.5134 22 1 -0.3633 -0.8898 -0.5143 23 1 4.9791 1.7457 1.0263 24 1 5.5142 1.0358 -0.5158 25 1 4.4417 2.4563 -0.5146 26 1 -0.1123 -3.0636 3.1194 27 1 3.5779 -3.2672 -1.2046 28 1 2.1700 -2.7050 -2.1373 29 1 0.9738 -4.6450 -1.2937 30 1 2.3341 -5.1055 -2.1328 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260581515.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:15 Heat of formation + Delta-G solvation = 75.510802 kcal Electronic energy + Delta-G solvation = -14133.271735 eV Core-core repulsion = 11772.004338 eV Total energy + Delta-G solvation = -2361.267396 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -44.17261 -37.25196 -34.82010 -34.15606 -33.32172 -30.88113 -29.89044 -26.73148 -25.86541 -23.38914 -21.81977 -21.04606 -18.39236 -17.88338 -17.51565 -16.57148 -16.34971 -15.34489 -14.77342 -14.49650 -14.31093 -14.14882 -13.82245 -13.43881 -13.32289 -13.20653 -12.80685 -12.61843 -12.43271 -11.98443 -11.57781 -11.48197 -10.97575 -10.69507 -10.50787 -9.50285 -9.21546 -8.03926 -6.04857 1.06096 1.39974 1.42501 1.52074 1.78773 1.80410 2.49756 3.24426 3.48375 3.98513 4.21064 4.34300 4.36040 4.51716 4.58196 4.61317 4.82427 4.87589 4.95895 5.12027 5.24498 5.41713 5.69003 5.76288 5.92227 6.12550 6.36085 6.58828 6.94103 7.00340 7.55142 7.68151 9.04230 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.024827 B = 0.012323 C = 0.011064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.524925 B = 2271.708040 C = 2530.100502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 C -0.026 4.026 3 N -0.315 5.315 4 N -0.180 5.180 5 C 0.103 3.897 6 N -0.320 5.320 7 C 0.037 3.963 8 C 0.114 3.886 9 H 0.063 0.937 10 C -0.479 4.479 11 H 0.037 0.963 12 C 0.023 3.977 13 N -0.909 5.909 14 Si 0.939 3.061 15 H -0.290 1.290 16 H -0.280 1.280 17 H -0.273 1.273 18 C 0.094 3.906 19 N -0.839 5.839 20 H 0.063 0.937 21 H 0.084 0.916 22 H 0.076 0.924 23 H 0.092 0.908 24 H 0.112 0.888 25 H 0.119 0.881 26 H 0.259 0.741 27 H 0.045 0.955 28 H 0.006 0.994 29 H 0.341 0.659 30 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.845 6.083 -6.209 9.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.187 4.187 3 N -0.159 5.159 4 N -0.080 5.080 5 C -0.035 4.035 6 N -0.162 5.162 7 C -0.126 4.126 8 C 0.093 3.907 9 H 0.081 0.919 10 C -0.518 4.518 11 H 0.055 0.945 12 C -0.177 4.177 13 N -0.549 5.549 14 Si 0.767 3.233 15 H -0.217 1.217 16 H -0.205 1.205 17 H -0.198 1.198 18 C -0.037 4.037 19 N -0.369 5.369 20 H 0.082 0.918 21 H 0.103 0.897 22 H 0.095 0.905 23 H 0.110 0.890 24 H 0.131 0.869 25 H 0.138 0.862 26 H 0.069 0.931 27 H 0.064 0.936 28 H 0.024 0.976 29 H 0.153 0.847 30 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 4.238 6.853 -5.411 9.706 hybrid contribution -0.677 -0.518 0.316 0.909 sum 3.561 6.335 -5.095 8.875 Atomic orbital electron populations 1.19868 0.84544 1.03039 1.02558 1.23452 0.99348 0.88747 1.07189 1.73705 0.92115 1.28287 1.21814 1.48275 1.05664 1.03166 1.50945 1.22356 0.82571 0.93004 1.05569 1.73922 1.25710 0.94547 1.21977 1.24154 0.87584 0.99975 1.00891 1.17312 0.97578 0.82426 0.93377 0.91877 1.20857 0.98772 1.34985 0.97158 0.94497 1.25483 0.95225 0.95954 1.00992 1.69957 1.06150 1.49429 1.29357 0.85848 0.78401 0.78231 0.80837 1.21651 1.20505 1.19770 1.21540 0.98378 0.88587 0.95208 1.58360 1.14542 1.16597 1.47380 0.91811 0.89713 0.90511 0.88966 0.86906 0.86212 0.93145 0.93641 0.97564 0.84660 0.84676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -1.56 10.20 71.23 0.73 -0.83 16 2 C -0.03 -1.14 7.35 42.97 0.32 -0.83 16 3 N -0.31 -13.16 12.05 -47.25 -0.57 -13.73 16 4 N -0.18 -7.09 4.35 -206.56 -0.90 -7.99 16 5 C 0.10 2.52 11.57 127.77 1.48 4.00 16 6 N -0.32 -14.81 12.05 -47.25 -0.57 -15.38 16 7 C 0.04 1.81 5.84 42.98 0.25 2.06 16 8 C 0.11 5.69 2.49 -12.28 -0.03 5.66 16 9 H 0.06 3.33 6.27 -2.39 -0.01 3.31 16 10 C -0.48 -26.76 8.03 25.60 0.21 -26.55 16 11 H 0.04 2.16 7.82 -2.91 -0.02 2.14 16 12 C 0.02 1.27 5.45 84.66 0.46 1.73 16 13 N -0.91 -51.39 12.77 21.45 0.27 -51.12 16 14 Si 0.94 45.48 29.54 68.60 2.03 47.50 16 15 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 16 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 17 H -0.27 -13.07 7.11 99.48 0.71 -12.36 16 18 C 0.09 4.06 6.14 86.30 0.53 4.59 16 19 N -0.84 -32.28 9.35 -186.71 -1.75 -34.02 16 20 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 21 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 22 H 0.08 2.83 7.44 -2.38 -0.02 2.81 16 23 H 0.09 2.00 8.14 -2.38 -0.02 1.98 16 24 H 0.11 2.31 8.14 -2.39 -0.02 2.29 16 25 H 0.12 2.21 8.14 -2.39 -0.02 2.19 16 26 H 0.26 14.09 8.31 -92.70 -0.77 13.32 16 27 H 0.05 2.05 8.14 -2.38 -0.02 2.03 16 28 H 0.01 0.25 8.14 -2.39 -0.02 0.23 16 29 H 0.34 12.60 8.99 -89.70 -0.81 11.79 16 30 H 0.34 10.55 9.08 -89.69 -0.81 9.74 16 Total: -1.00 -68.08 263.40 1.99 -66.08 By element: Atomic # 1 Polarization: 19.30 SS G_CDS: -0.46 Total: 18.84 kcal Atomic # 6 Polarization: -14.12 SS G_CDS: 3.94 Total: -10.18 kcal Atomic # 7 Polarization: -118.73 SS G_CDS: -3.51 Total: -122.24 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.50 kcal Total: -68.08 1.99 -66.08 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260581515.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.593 kcal (2) G-P(sol) polarization free energy of solvation -68.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds