Wall clock time and date at job start Mon Mar 30 2020 02:53:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86792 * 120.00654 * 2 1 4 4 H 1.48501 * 109.47041 * 240.00149 * 3 2 1 5 5 H 1.48503 * 109.46884 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47225 * 119.99915 * 3 2 1 7 7 C 1.37883 * 119.99198 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99678 * 185.66269 * 7 2 1 9 9 C 1.50697 * 120.00599 * 5.65979 * 7 2 1 10 10 H 1.09004 * 109.46621 * 354.91667 * 9 7 2 11 11 C 1.53003 * 109.47046 * 114.91186 * 9 7 2 12 12 C 1.53777 * 113.61569 * 279.13791 * 11 9 7 13 13 C 1.53953 * 87.02086 * 220.05088 * 12 11 9 14 14 C 1.53778 * 113.61151 * 181.53189 * 11 9 7 15 15 C 1.52995 * 109.47276 * 234.91431 * 9 7 2 16 16 H 1.09000 * 110.75208 * 290.60043 * 15 9 7 17 17 C 1.55565 * 111.00975 * 167.02393 * 15 9 7 18 18 C 1.54957 * 100.82611 * 207.60528 * 17 15 9 19 19 O 1.43650 * 105.21983 * 36.44343 * 18 17 15 20 20 C 1.43237 * 109.97261 * 335.52584 * 19 18 17 21 21 H 0.96999 * 119.99251 * 359.97438 * 1 2 3 22 22 H 1.08996 * 112.84506 * 50.33540 * 11 9 7 23 23 H 1.08999 * 113.61423 * 334.56783 * 12 11 9 24 24 H 1.08997 * 113.61306 * 105.47362 * 12 11 9 25 25 H 1.08998 * 113.53623 * 270.81502 * 13 12 11 26 26 H 1.08995 * 113.66892 * 139.93162 * 13 12 11 27 27 H 1.09006 * 113.61698 * 254.53032 * 14 11 9 28 28 H 1.08998 * 113.61655 * 25.43305 * 14 11 9 29 29 H 1.09002 * 111.22645 * 89.71039 * 17 15 9 30 30 H 1.08996 * 111.13597 * 325.46414 * 17 15 9 31 31 H 1.08999 * 110.30917 * 277.48021 * 18 17 15 32 32 H 1.09002 * 110.30937 * 155.40574 * 18 17 15 33 33 H 1.08991 * 109.83448 * 121.22400 * 20 19 18 34 34 H 1.09002 * 109.83156 * 242.11028 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1031 1.6961 -1.2125 5 1 1.2844 2.7464 0.0006 6 1 3.1031 1.6962 1.2125 7 6 2.0044 -1.1942 -0.0005 8 1 3.0805 -1.1966 0.0918 9 6 1.2564 -2.4960 -0.1298 10 1 0.1839 -2.3012 -0.1206 11 6 1.6399 -3.1761 -1.4456 12 6 0.8921 -2.6184 -2.6681 13 6 0.7850 -4.0717 -3.1649 14 6 0.8998 -4.5012 -1.6927 15 6 1.6187 -3.4109 1.0417 16 1 2.6503 -3.7532 0.9598 17 6 0.6407 -4.6175 1.1303 18 6 0.7025 -4.9316 2.6464 19 8 0.8133 -3.6532 3.2922 20 6 1.3820 -2.6970 2.3900 21 1 -0.4849 0.8401 0.0004 22 1 2.7184 -3.2452 -1.5876 23 1 -0.0702 -2.1686 -2.4236 24 1 1.5081 -1.9829 -3.3043 25 1 1.6296 -4.3854 -3.7783 26 1 -0.1784 -4.3102 -3.6154 27 1 1.5220 -5.3835 -1.5426 28 1 -0.0603 -4.5671 -1.1810 29 1 0.9994 -5.4604 0.5396 30 1 -0.3667 -4.3297 0.8295 31 1 1.5750 -5.5454 2.8703 32 1 -0.2081 -5.4388 2.9652 33 1 0.6930 -1.8640 2.2513 34 1 2.3289 -2.3313 2.7873 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260701577.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:22 Heat of formation + Delta-G solvation = -44.884391 kcal Electronic energy + Delta-G solvation = -14726.096271 eV Core-core repulsion = 12430.855739 eV Total energy + Delta-G solvation = -2295.240531 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.03140 -37.52037 -33.46408 -31.61918 -29.23141 -26.92738 -24.94279 -24.29381 -21.82232 -21.45897 -19.19476 -18.41780 -16.47324 -15.71862 -15.17971 -14.67882 -14.29925 -13.86631 -13.64300 -12.74172 -12.34982 -12.03195 -11.64674 -11.56350 -11.37658 -10.91805 -10.85448 -10.68141 -10.51405 -10.32832 -10.09091 -9.70611 -9.60822 -9.12987 -8.96962 -8.66474 -8.59731 -8.39505 -6.02251 -4.03266 3.31379 3.36893 3.39506 4.43003 4.71163 5.23896 5.41154 5.44831 5.51977 5.60460 5.67698 5.77512 5.91984 6.05222 6.21384 6.25547 6.33215 6.42706 6.50327 6.52185 6.63032 6.68777 6.84064 6.90469 7.02980 7.15272 7.21180 7.33174 7.58501 7.83754 7.84207 7.97766 8.44610 9.07080 9.59167 11.06200 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.021950 B = 0.014849 C = 0.009690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.298024 B = 1885.159436 C = 2888.824334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.070 3.930 3 Si 0.884 3.116 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.510 4.510 8 H 0.050 0.950 9 C 0.050 3.950 10 H 0.073 0.927 11 C -0.088 4.088 12 C -0.118 4.118 13 C -0.152 4.152 14 C -0.144 4.144 15 C -0.100 4.100 16 H 0.057 0.943 17 C -0.154 4.154 18 C 0.050 3.950 19 O -0.403 6.403 20 C 0.067 3.933 21 H 0.261 0.739 22 H 0.065 0.935 23 H 0.080 0.920 24 H 0.051 0.949 25 H 0.066 0.934 26 H 0.052 0.948 27 H 0.049 0.951 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.046 0.954 32 H 0.069 0.931 33 H 0.086 0.914 34 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.945 -7.506 -1.286 7.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.131 4.131 3 Si 0.712 3.288 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.548 4.548 8 H 0.068 0.932 9 C 0.031 3.969 10 H 0.091 0.909 11 C -0.107 4.107 12 C -0.155 4.155 13 C -0.189 4.189 14 C -0.181 4.181 15 C -0.119 4.119 16 H 0.076 0.924 17 C -0.192 4.192 18 C -0.027 4.027 19 O -0.323 6.323 20 C -0.009 4.009 21 H 0.071 0.929 22 H 0.084 0.916 23 H 0.099 0.901 24 H 0.069 0.931 25 H 0.084 0.916 26 H 0.071 0.929 27 H 0.067 0.933 28 H 0.095 0.905 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.064 0.936 32 H 0.087 0.913 33 H 0.105 0.895 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.723 -7.317 -1.076 7.431 hybrid contribution 0.684 0.914 -0.311 1.183 sum 1.407 -6.403 -1.387 6.701 Atomic orbital electron populations 1.69878 1.05809 1.26675 1.50546 1.24906 0.94753 0.98903 0.94589 0.86793 0.79785 0.83613 0.78636 1.20329 1.21380 1.20277 1.20971 0.93101 0.90521 1.50177 0.93187 1.18951 0.99821 0.91350 0.86770 0.90868 1.22595 0.97393 0.92998 0.97666 1.22736 1.01215 0.93991 0.97593 1.22936 1.00101 0.99088 0.96795 1.23149 1.00974 0.98248 0.95756 1.22820 0.97291 0.94272 0.97502 0.92427 1.23556 1.01257 0.99328 0.95014 1.23275 0.99633 0.86775 0.92990 1.88303 1.84459 1.19663 1.39834 1.23144 0.98007 0.91655 0.88064 0.92862 0.91610 0.90119 0.93064 0.91579 0.92912 0.93263 0.90466 0.90956 0.90788 0.93600 0.91272 0.89543 0.92874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.67 12.62 55.43 0.70 -23.97 16 2 C 0.07 1.87 5.45 -17.82 -0.10 1.78 16 3 Si 0.88 20.89 29.54 -169.99 -5.02 15.87 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.51 -13.15 7.25 -34.44 -0.25 -13.40 16 8 H 0.05 1.30 7.82 -52.49 -0.41 0.89 16 9 C 0.05 1.14 1.45 -91.77 -0.13 1.01 16 10 H 0.07 1.90 6.60 -51.93 -0.34 1.56 16 11 C -0.09 -1.79 3.09 -89.81 -0.28 -2.06 16 12 C -0.12 -2.35 7.62 -25.83 -0.20 -2.54 16 13 C -0.15 -2.50 8.09 -25.83 -0.21 -2.71 16 14 C -0.14 -2.47 5.47 -25.92 -0.14 -2.61 16 15 C -0.10 -2.06 2.50 -88.53 -0.22 -2.28 16 16 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 17 C -0.15 -2.71 4.68 -24.33 -0.11 -2.82 16 18 C 0.05 0.85 7.77 38.19 0.30 1.15 16 19 O -0.40 -8.43 11.36 -35.23 -0.40 -8.83 16 20 C 0.07 1.47 6.65 37.89 0.25 1.72 16 21 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 22 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 23 H 0.08 1.76 7.99 -51.93 -0.41 1.35 16 24 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 25 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 26 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.05 0.77 7.77 -51.93 -0.40 0.37 16 28 H 0.08 1.34 6.44 -51.93 -0.33 1.00 16 29 H 0.07 1.12 6.71 -51.93 -0.35 0.77 16 30 H 0.07 1.36 7.27 -51.93 -0.38 0.98 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.09 2.16 7.59 -51.93 -0.39 1.76 16 34 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 266.49 15.07 4.02 4.02 Total: -1.00 -26.79 266.49 -7.34 -34.13 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -5.54 Total: 1.55 kcal Atomic # 6 Polarization: -21.68 SS G_CDS: -1.09 Total: -22.77 kcal Atomic # 7 Polarization: -24.67 SS G_CDS: 0.70 Total: -23.97 kcal Atomic # 8 Polarization: -8.43 SS G_CDS: -0.40 Total: -8.83 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -26.79 -7.34 -34.13 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260701577.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.754 kcal (2) G-P(sol) polarization free energy of solvation -26.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds