Wall clock time and date at job start Mon Mar 30 2020 02:53:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 119.99483 * 2 1 4 4 H 1.48505 * 109.47208 * 274.13753 * 3 2 1 5 5 H 1.48496 * 109.47468 * 34.14155 * 3 2 1 6 6 H 1.48503 * 109.47068 * 154.13902 * 3 2 1 7 7 C 1.37870 * 120.00301 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00421 * 354.11814 * 7 2 1 9 9 C 1.50705 * 120.00162 * 174.12388 * 7 2 1 10 10 H 1.09004 * 109.46800 * 4.82519 * 9 7 2 11 11 C 1.52999 * 109.47176 * 124.82271 * 9 7 2 12 12 C 1.53778 * 113.61495 * 280.13686 * 11 9 7 13 13 C 1.53951 * 87.01979 * 220.05071 * 12 11 9 14 14 C 1.53776 * 87.11266 * 25.36451 * 13 12 11 15 15 C 1.53000 * 109.46939 * 244.82718 * 9 7 2 16 16 H 1.09002 * 110.43411 * 182.30529 * 15 9 7 17 17 C 1.54812 * 110.48776 * 304.98810 * 15 9 7 18 18 C 1.54999 * 102.09410 * 139.55757 * 17 15 9 19 19 O 1.44376 * 103.48977 * 322.98081 * 18 17 15 20 20 C 1.43742 * 106.97763 * 40.05752 * 19 18 17 21 21 H 0.97000 * 120.00763 * 359.97438 * 1 2 3 22 22 H 1.08999 * 112.84629 * 51.33952 * 11 9 7 23 23 H 1.09000 * 113.61383 * 334.57376 * 12 11 9 24 24 H 1.09001 * 113.60933 * 105.46986 * 12 11 9 25 25 H 1.08998 * 113.53828 * 270.81430 * 13 12 11 26 26 H 1.09003 * 113.74545 * 139.94847 * 13 12 11 27 27 H 1.08996 * 113.61463 * 220.09218 * 14 13 12 28 28 H 1.09004 * 113.69396 * 89.19613 * 14 13 12 29 29 H 1.08999 * 110.91207 * 257.76130 * 17 15 9 30 30 H 1.09005 * 110.90704 * 21.32633 * 17 15 9 31 31 H 1.09000 * 110.62070 * 204.47806 * 18 17 15 32 32 H 1.08997 * 110.61355 * 81.47952 * 18 17 15 33 33 H 1.09001 * 109.87930 * 92.91110 * 20 19 18 34 34 H 1.09004 * 109.88129 * 214.06474 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4090 2.0970 -1.3965 5 1 1.4930 2.6258 0.7857 6 1 3.5876 1.4167 0.6107 7 6 2.0046 -1.1940 -0.0005 8 1 1.4689 -2.1269 0.0949 9 6 3.5057 -1.1973 -0.1342 10 1 3.8728 -0.1710 -0.1323 11 6 4.1205 -1.9610 1.0404 12 6 4.2090 -1.1343 2.3341 13 6 5.5899 -1.7776 2.5557 14 6 5.6583 -1.9705 1.0316 15 6 3.8993 -1.8774 -1.4469 16 1 4.9842 -1.9249 -1.5406 17 6 3.2831 -3.2953 -1.5286 18 6 2.8420 -3.3727 -3.0125 19 8 2.3784 -2.0352 -3.2963 20 6 3.2864 -1.1296 -2.6469 21 1 -0.4851 0.8400 0.0004 22 1 3.6786 -2.9473 1.1817 23 1 4.2508 -0.0586 2.1628 24 1 3.4695 -1.4162 3.0836 25 1 5.5497 -2.7136 3.1128 26 1 6.3391 -1.0867 2.9425 27 1 6.0873 -2.9264 0.7312 28 1 6.0971 -1.1246 0.5023 29 1 4.0294 -4.0574 -1.3043 30 1 2.4253 -3.3856 -0.8621 31 1 2.0335 -4.0934 -3.1355 32 1 3.6871 -3.6296 -3.6511 33 1 4.0736 -0.8334 -3.3402 34 1 2.7462 -0.2494 -2.2983 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260701579.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:23 Heat of formation + Delta-G solvation = -37.287602 kcal Electronic energy + Delta-G solvation = -14879.339679 eV Core-core repulsion = 12584.428569 eV Total energy + Delta-G solvation = -2294.911110 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.12656 -37.64556 -33.47815 -31.62902 -29.14620 -27.24234 -25.09655 -24.28450 -21.98350 -21.59636 -19.29498 -18.28409 -16.88373 -15.56057 -15.23993 -14.78349 -14.25222 -14.08156 -13.59382 -13.01935 -12.54936 -12.08091 -11.86156 -11.71380 -11.42331 -11.04775 -10.88101 -10.68270 -10.49959 -10.30820 -10.01339 -9.91589 -9.56006 -9.22887 -9.00302 -8.77008 -8.68094 -8.40190 -6.00554 -3.96972 3.27612 3.35382 3.38042 4.43895 4.78811 5.22965 5.28825 5.38711 5.40816 5.53484 5.65272 5.77958 5.81585 5.90672 6.10720 6.17024 6.27888 6.34782 6.37160 6.42616 6.45630 6.52920 6.67591 6.79115 6.82116 6.91346 7.02230 7.12010 7.30974 7.43171 7.72038 7.87034 8.59386 9.04917 9.62439 11.13218 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.020491 B = 0.018413 C = 0.011602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.109659 B = 1520.286281 C = 2412.839820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.074 3.926 3 Si 0.861 3.139 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.260 1.260 7 C -0.491 4.491 8 H 0.075 0.925 9 C 0.021 3.979 10 H 0.041 0.959 11 C -0.083 4.083 12 C -0.128 4.128 13 C -0.147 4.147 14 C -0.145 4.145 15 C -0.108 4.108 16 H 0.052 0.948 17 C -0.140 4.140 18 C 0.047 3.953 19 O -0.373 6.373 20 C 0.062 3.938 21 H 0.261 0.739 22 H 0.077 0.923 23 H 0.073 0.927 24 H 0.060 0.940 25 H 0.070 0.930 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.071 0.929 29 H 0.056 0.944 30 H 0.094 0.906 31 H 0.079 0.921 32 H 0.042 0.958 33 H 0.031 0.969 34 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.846 -3.695 -0.203 10.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.127 4.127 3 Si 0.690 3.310 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.185 1.185 7 C -0.529 4.529 8 H 0.093 0.907 9 C 0.003 3.997 10 H 0.059 0.941 11 C -0.102 4.102 12 C -0.166 4.166 13 C -0.184 4.184 14 C -0.183 4.183 15 C -0.127 4.127 16 H 0.071 0.929 17 C -0.177 4.177 18 C -0.030 4.030 19 O -0.291 6.291 20 C -0.015 4.015 21 H 0.071 0.929 22 H 0.095 0.905 23 H 0.091 0.909 24 H 0.079 0.921 25 H 0.089 0.911 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.089 0.911 29 H 0.075 0.925 30 H 0.112 0.888 31 H 0.097 0.903 32 H 0.060 0.940 33 H 0.049 0.951 34 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 9.483 -3.506 -0.328 10.116 hybrid contribution 0.594 0.916 0.119 1.098 sum 10.077 -2.591 -0.209 10.406 Atomic orbital electron populations 1.69895 1.06187 1.26562 1.51063 1.25036 0.94545 0.98384 0.94752 0.87149 0.80620 0.84805 0.78460 1.20417 1.21655 1.18498 1.20855 0.88798 0.94286 1.48924 0.90734 1.19333 0.96935 0.94674 0.88806 0.94127 1.22523 0.92175 0.99198 0.96294 1.22842 0.95343 0.99681 0.98700 1.22878 0.98393 1.00291 0.96870 1.23012 0.99130 1.00517 0.95634 1.22612 0.97040 0.95177 0.97872 0.92935 1.23145 1.01531 0.96313 0.96738 1.23420 0.97984 0.86075 0.95473 1.88829 1.51388 1.15221 1.73687 1.23119 0.91765 0.94553 0.92031 0.92872 0.90451 0.90873 0.92141 0.91093 0.92768 0.92813 0.91072 0.92530 0.88759 0.90262 0.94013 0.95071 0.89393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.19 13.96 55.43 0.77 -26.42 16 2 C 0.07 2.07 5.12 -17.82 -0.09 1.98 16 3 Si 0.86 21.03 26.15 -169.99 -4.45 16.58 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.26 -5.96 5.61 56.52 0.32 -5.64 16 7 C -0.49 -12.93 7.11 -34.44 -0.24 -13.17 16 8 H 0.07 2.17 6.70 -52.49 -0.35 1.81 16 9 C 0.02 0.47 1.21 -91.77 -0.11 0.36 16 10 H 0.04 0.93 4.28 -51.93 -0.22 0.71 16 11 C -0.08 -1.60 2.70 -89.81 -0.24 -1.84 16 12 C -0.13 -2.38 7.61 -25.83 -0.20 -2.58 16 13 C -0.15 -2.25 8.09 -25.83 -0.21 -2.46 16 14 C -0.15 -2.35 6.79 -25.92 -0.18 -2.52 16 15 C -0.11 -2.14 2.75 -89.09 -0.24 -2.38 16 16 H 0.05 0.93 7.51 -51.93 -0.39 0.54 16 17 C -0.14 -2.60 5.82 -24.72 -0.14 -2.74 16 18 C 0.05 0.86 7.72 38.21 0.29 1.15 16 19 O -0.37 -8.31 11.52 -35.23 -0.41 -8.72 16 20 C 0.06 1.32 6.91 37.73 0.26 1.58 16 21 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 22 H 0.08 1.51 7.89 -51.93 -0.41 1.10 16 23 H 0.07 1.44 7.40 -51.93 -0.38 1.06 16 24 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 25 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.07 1.15 8.10 -51.93 -0.42 0.73 16 29 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.09 1.99 5.92 -51.93 -0.31 1.69 16 31 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 32 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.09 2.11 5.60 -51.93 -0.29 1.82 16 LS Contribution 260.12 15.07 3.92 3.92 Total: -1.00 -29.02 260.12 -6.64 -35.66 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -5.38 Total: 1.61 kcal Atomic # 6 Polarization: -21.53 SS G_CDS: -1.10 Total: -22.63 kcal Atomic # 7 Polarization: -27.19 SS G_CDS: 0.77 Total: -26.42 kcal Atomic # 8 Polarization: -8.31 SS G_CDS: -0.41 Total: -8.72 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.45 Total: 16.58 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -29.02 -6.64 -35.66 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260701579.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.631 kcal (2) G-P(sol) polarization free energy of solvation -29.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds