Wall clock time and date at job start Mon Mar 30 2020 02:53:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 119.99483 * 2 1 4 4 H 1.48505 * 109.47208 * 274.13753 * 3 2 1 5 5 H 1.48496 * 109.47468 * 34.14155 * 3 2 1 6 6 H 1.48503 * 109.47068 * 154.13902 * 3 2 1 7 7 C 1.37870 * 120.00301 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00421 * 354.11814 * 7 2 1 9 9 C 1.50705 * 120.00162 * 174.12388 * 7 2 1 10 10 H 1.09004 * 109.46800 * 4.82519 * 9 7 2 11 11 C 1.52999 * 109.47176 * 124.82271 * 9 7 2 12 12 C 1.53778 * 113.61495 * 280.13686 * 11 9 7 13 13 C 1.53951 * 87.01979 * 220.05071 * 12 11 9 14 14 C 1.53776 * 87.11266 * 25.36451 * 13 12 11 15 15 C 1.53000 * 109.46939 * 244.82718 * 9 7 2 16 16 H 1.09002 * 110.43411 * 182.30529 * 15 9 7 17 17 C 1.54812 * 110.48776 * 304.98810 * 15 9 7 18 18 C 1.54999 * 102.09410 * 139.55757 * 17 15 9 19 19 O 1.44376 * 103.48977 * 322.98081 * 18 17 15 20 20 C 1.43742 * 106.97763 * 40.05752 * 19 18 17 21 21 H 0.97000 * 120.00763 * 359.97438 * 1 2 3 22 22 H 1.08999 * 112.84629 * 51.33952 * 11 9 7 23 23 H 1.09000 * 113.61383 * 334.57376 * 12 11 9 24 24 H 1.09001 * 113.60933 * 105.46986 * 12 11 9 25 25 H 1.08998 * 113.53828 * 270.81430 * 13 12 11 26 26 H 1.09003 * 113.74545 * 139.94847 * 13 12 11 27 27 H 1.08996 * 113.61463 * 220.09218 * 14 13 12 28 28 H 1.09004 * 113.69396 * 89.19613 * 14 13 12 29 29 H 1.08999 * 110.91207 * 257.76130 * 17 15 9 30 30 H 1.09005 * 110.90704 * 21.32633 * 17 15 9 31 31 H 1.09000 * 110.62070 * 204.47806 * 18 17 15 32 32 H 1.08997 * 110.61355 * 81.47952 * 18 17 15 33 33 H 1.09001 * 109.87930 * 92.91110 * 20 19 18 34 34 H 1.09004 * 109.88129 * 214.06474 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4090 2.0970 -1.3965 5 1 1.4930 2.6258 0.7857 6 1 3.5876 1.4167 0.6107 7 6 2.0046 -1.1940 -0.0005 8 1 1.4689 -2.1269 0.0949 9 6 3.5057 -1.1973 -0.1342 10 1 3.8728 -0.1710 -0.1323 11 6 4.1205 -1.9610 1.0404 12 6 4.2090 -1.1343 2.3341 13 6 5.5899 -1.7776 2.5557 14 6 5.6583 -1.9705 1.0316 15 6 3.8993 -1.8774 -1.4469 16 1 4.9842 -1.9249 -1.5406 17 6 3.2831 -3.2953 -1.5286 18 6 2.8420 -3.3727 -3.0125 19 8 2.3784 -2.0352 -3.2963 20 6 3.2864 -1.1296 -2.6469 21 1 -0.4851 0.8400 0.0004 22 1 3.6786 -2.9473 1.1817 23 1 4.2508 -0.0586 2.1628 24 1 3.4695 -1.4162 3.0836 25 1 5.5497 -2.7136 3.1128 26 1 6.3391 -1.0867 2.9425 27 1 6.0873 -2.9264 0.7312 28 1 6.0971 -1.1246 0.5023 29 1 4.0294 -4.0574 -1.3043 30 1 2.4253 -3.3856 -0.8621 31 1 2.0335 -4.0934 -3.1355 32 1 3.6871 -3.6296 -3.6511 33 1 4.0736 -0.8334 -3.3402 34 1 2.7462 -0.2494 -2.2983 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260701579.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:23 Heat of formation + Delta-G solvation = -55.573105 kcal Electronic energy + Delta-G solvation = -14880.132598 eV Core-core repulsion = 12584.428569 eV Total energy + Delta-G solvation = -2295.704029 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.136 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.68685 -39.11174 -35.30264 -33.55329 -30.74326 -28.91738 -26.60682 -25.93589 -23.50085 -23.17295 -20.88963 -19.83409 -18.85034 -17.13591 -16.82196 -16.38993 -15.94337 -15.62333 -15.29278 -14.64004 -14.42852 -13.72611 -13.32458 -13.28287 -12.95742 -12.74256 -12.57828 -12.25480 -12.04497 -11.84935 -11.82445 -11.32513 -11.17435 -10.93898 -10.63751 -10.58208 -10.41670 -10.22704 -8.17630 -6.15249 1.31518 1.33804 1.42137 2.38449 3.15192 3.31404 3.82773 3.99821 4.05039 4.12756 4.18006 4.28610 4.39164 4.46911 4.63382 4.77555 4.90459 4.95205 4.97757 5.03014 5.04146 5.14414 5.17049 5.23019 5.26648 5.35104 5.46810 5.62104 5.68330 5.81928 5.90854 6.20064 6.47704 6.90027 7.47095 9.00271 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.020491 B = 0.018413 C = 0.011602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.109659 B = 1520.286281 C = 2412.839820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C 0.012 3.988 3 Si 0.916 3.084 4 H -0.275 1.275 5 H -0.297 1.297 6 H -0.232 1.232 7 C -0.471 4.471 8 H 0.033 0.967 9 C 0.021 3.979 10 H 0.035 0.965 11 C -0.093 4.093 12 C -0.144 4.144 13 C -0.129 4.129 14 C -0.131 4.131 15 C -0.105 4.105 16 H 0.089 0.911 17 C -0.136 4.136 18 C 0.044 3.956 19 O -0.409 6.409 20 C 0.055 3.945 21 H 0.258 0.742 22 H 0.069 0.931 23 H 0.059 0.941 24 H 0.048 0.952 25 H 0.086 0.914 26 H 0.073 0.927 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.092 0.908 30 H 0.056 0.944 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.063 0.937 34 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.471 -4.334 -0.402 14.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.183 4.183 3 Si 0.742 3.258 4 H -0.201 1.201 5 H -0.224 1.224 6 H -0.156 1.156 7 C -0.509 4.509 8 H 0.051 0.949 9 C 0.002 3.998 10 H 0.053 0.947 11 C -0.112 4.112 12 C -0.181 4.181 13 C -0.166 4.166 14 C -0.169 4.169 15 C -0.124 4.124 16 H 0.107 0.893 17 C -0.173 4.173 18 C -0.032 4.032 19 O -0.328 6.328 20 C -0.021 4.021 21 H 0.067 0.933 22 H 0.088 0.912 23 H 0.078 0.922 24 H 0.067 0.933 25 H 0.105 0.895 26 H 0.092 0.908 27 H 0.095 0.905 28 H 0.095 0.905 29 H 0.111 0.889 30 H 0.075 0.925 31 H 0.104 0.896 32 H 0.096 0.904 33 H 0.081 0.919 34 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 13.148 -4.162 -0.523 13.801 hybrid contribution -0.588 0.995 0.170 1.169 sum 12.560 -3.167 -0.353 12.958 Atomic orbital electron populations 1.70066 1.08216 1.27113 1.54483 1.25797 0.95085 1.02105 0.95300 0.86249 0.80522 0.80435 0.78577 1.20066 1.22409 1.15555 1.21094 0.91471 0.92220 1.46095 0.94923 1.19320 0.93617 0.95330 0.91528 0.94678 1.22472 0.95064 0.98434 0.95218 1.22919 0.97817 0.99030 0.98343 1.22806 0.96096 1.00956 0.96769 1.22934 0.95625 1.02044 0.96268 1.22587 0.99039 0.95158 0.95643 0.89275 1.23068 1.01017 0.96778 0.96467 1.23671 0.99572 0.84375 0.95602 1.88786 1.52768 1.17274 1.74020 1.23183 0.91926 0.93537 0.93453 0.93332 0.91248 0.92184 0.93348 0.89524 0.90834 0.90457 0.90490 0.88908 0.92517 0.89608 0.90365 0.91890 0.93047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.96 13.96 21.44 0.30 -60.66 16 2 C 0.01 0.72 5.12 84.65 0.43 1.15 16 3 Si 0.92 44.12 26.15 68.60 1.79 45.92 16 4 H -0.27 -12.99 7.11 99.48 0.71 -12.28 16 5 H -0.30 -14.52 7.11 99.48 0.71 -13.82 16 6 H -0.23 -10.01 5.61 99.48 0.56 -9.45 16 7 C -0.47 -25.55 7.11 25.60 0.18 -25.37 16 8 H 0.03 2.01 6.70 -2.91 -0.02 1.99 16 9 C 0.02 0.89 1.21 -11.54 -0.01 0.87 16 10 H 0.04 1.54 4.28 -2.39 -0.01 1.53 16 11 C -0.09 -3.39 2.70 -10.27 -0.03 -3.41 16 12 C -0.14 -5.07 7.61 31.18 0.24 -4.84 16 13 C -0.13 -3.41 8.09 31.18 0.25 -3.16 16 14 C -0.13 -3.62 6.79 31.12 0.21 -3.41 16 15 C -0.11 -3.90 2.75 -9.80 -0.03 -3.93 16 16 H 0.09 2.71 7.51 -2.39 -0.02 2.69 16 17 C -0.14 -4.77 5.82 31.90 0.19 -4.59 16 18 C 0.04 1.49 7.72 72.67 0.56 2.05 16 19 O -0.41 -17.99 11.52 -148.98 -1.72 -19.71 16 20 C 0.06 2.28 6.91 72.35 0.50 2.78 16 21 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 22 H 0.07 2.62 7.89 -2.39 -0.02 2.60 16 23 H 0.06 2.26 7.40 -2.39 -0.02 2.24 16 24 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 25 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 26 H 0.07 1.70 8.14 -2.39 -0.02 1.69 16 27 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.08 2.07 8.10 -2.38 -0.02 2.05 16 29 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 30 H 0.06 2.42 5.92 -2.38 -0.01 2.41 16 31 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 32 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 34 H 0.05 2.47 5.60 -2.38 -0.01 2.45 16 Total: -1.00 -66.02 260.12 3.79 -62.23 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: 0.91 Total: 14.09 kcal Atomic # 6 Polarization: -44.36 SS G_CDS: 2.49 Total: -41.86 kcal Atomic # 7 Polarization: -60.96 SS G_CDS: 0.30 Total: -60.66 kcal Atomic # 8 Polarization: -17.99 SS G_CDS: -1.72 Total: -19.71 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 1.79 Total: 45.92 kcal Total: -66.02 3.79 -62.23 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260701579.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.657 kcal (2) G-P(sol) polarization free energy of solvation -66.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds