Wall clock time and date at job start Mon Mar 30 2020 02:25:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47658 * 2 1 4 4 C 1.50697 * 109.47028 * 239.99739 * 2 1 3 5 5 H 1.07999 * 120.00347 * 239.72547 * 4 2 1 6 6 C 1.37876 * 120.00082 * 60.00355 * 4 2 1 7 7 N 1.31520 * 119.99990 * 359.72366 * 6 4 2 8 8 Si 1.86806 * 120.00320 * 179.72237 * 6 4 2 9 9 H 1.48498 * 109.46819 * 60.00025 * 8 6 4 10 10 H 1.48502 * 109.47165 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.47010 * 300.00392 * 8 6 4 12 12 C 1.50704 * 109.46877 * 120.00346 * 2 1 3 13 13 C 1.34822 * 125.77016 * 246.56795 * 12 2 1 14 14 C 1.41480 * 108.08118 * 179.88295 * 13 12 2 15 15 O 1.21777 * 126.18994 * 180.15290 * 14 13 12 16 16 N 1.34865 * 107.61488 * 0.37764 * 14 13 12 17 17 C 1.46496 * 126.16644 * 179.74818 * 16 14 13 18 18 N 1.36598 * 125.77604 * 66.87392 * 12 2 1 19 19 C 1.46498 * 125.91143 * 0.02562 * 18 12 2 20 20 H 1.08998 * 109.47563 * 173.25286 * 1 2 3 21 21 H 1.09003 * 109.47023 * 293.25582 * 1 2 3 22 22 H 1.09003 * 109.46841 * 53.24940 * 1 2 3 23 23 H 0.97000 * 119.99967 * 179.97438 * 7 6 4 24 24 H 1.08002 * 125.96175 * 359.97438 * 13 12 2 25 25 H 1.08994 * 109.47741 * 270.03080 * 17 16 14 26 26 H 1.09004 * 109.46673 * 30.02849 * 17 16 14 27 27 H 1.08998 * 109.47173 * 150.02458 * 17 16 14 28 28 H 1.09004 * 109.46975 * 95.10861 * 19 18 12 29 29 H 1.08997 * 109.46906 * 215.11272 * 19 18 12 30 30 H 1.08999 * 109.46867 * 335.11206 * 19 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6568 -1.5860 -1.1314 6 6 1.6993 -0.2394 -2.4827 7 7 0.9387 0.8268 -2.6034 8 14 2.3283 -1.1155 -4.0080 9 1 1.8393 -2.5177 -4.0104 10 1 1.8327 -0.4158 -5.2205 11 1 3.8132 -1.1091 -4.0054 12 6 2.0323 -0.7105 1.2305 13 6 2.7051 -0.1404 2.2503 14 6 2.9908 -1.1454 3.2042 15 8 3.5848 -0.9905 4.2559 16 7 2.4905 -2.3069 2.7356 17 6 2.5642 -3.6105 3.4000 18 7 1.8881 -2.0422 1.4985 19 6 1.2201 -3.0239 0.6405 20 1 -0.3634 -1.0205 -0.1207 21 1 -0.3633 0.4058 0.9442 22 1 -0.3633 0.6149 -0.8235 23 1 0.7047 1.1584 -3.4844 24 1 2.9771 0.9021 2.3265 25 1 3.4733 -4.1255 3.0899 26 1 2.5782 -3.4673 4.4805 27 1 1.6957 -4.2085 3.1240 28 1 1.9605 -3.5243 0.0163 29 1 0.7098 -3.7608 1.2607 30 1 0.4931 -2.5169 0.0061 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260742478.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:36 Heat of formation + Delta-G solvation = 20.930596 kcal Electronic energy + Delta-G solvation = -14209.550530 eV Core-core repulsion = 11813.623607 eV Total energy + Delta-G solvation = -2395.926923 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.44647 -38.41321 -36.40924 -34.17540 -32.94048 -31.97171 -27.69943 -27.21917 -26.60099 -23.60495 -21.98245 -20.45957 -18.52257 -18.02202 -17.16229 -16.68825 -16.34079 -15.76507 -14.95921 -14.73200 -14.58821 -14.22631 -14.08576 -13.45148 -13.43396 -13.27833 -13.00436 -12.74338 -12.48936 -12.24026 -11.94797 -11.79847 -11.05399 -10.74663 -10.48920 -9.93732 -8.65068 -8.11021 -6.25646 0.71063 0.84700 1.47722 1.51532 1.56734 2.31662 2.46710 2.82904 3.19813 3.84320 4.10502 4.22699 4.37924 4.51548 4.62566 4.64398 4.72749 4.88627 4.97242 5.01773 5.12410 5.20796 5.46147 5.57972 5.78047 5.99042 6.18551 6.32170 6.55874 6.79463 7.31102 7.43378 8.94101 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.042593 B = 0.009663 C = 0.009015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.223929 B = 2896.940315 C = 3105.355513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.089 3.911 3 H 0.034 0.966 4 C -0.527 4.527 5 H 0.060 0.940 6 C 0.028 3.972 7 N -0.909 5.909 8 Si 0.952 3.048 9 H -0.261 1.261 10 H -0.288 1.288 11 H -0.281 1.281 12 C 0.248 3.752 13 C -0.419 4.419 14 C 0.515 3.485 15 O -0.619 6.619 16 N -0.427 5.427 17 C 0.097 3.903 18 N -0.381 5.381 19 C 0.099 3.901 20 H 0.049 0.951 21 H 0.027 0.973 22 H 0.069 0.931 23 H 0.265 0.735 24 H 0.145 0.855 25 H 0.075 0.925 26 H 0.092 0.908 27 H 0.109 0.891 28 H 0.073 0.927 29 H 0.104 0.896 30 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.729 -9.995 2.639 10.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.069 3.931 3 H 0.052 0.948 4 C -0.565 4.565 5 H 0.078 0.922 6 C -0.172 4.172 7 N -0.547 5.547 8 Si 0.778 3.222 9 H -0.185 1.185 10 H -0.214 1.214 11 H -0.207 1.207 12 C 0.127 3.873 13 C -0.449 4.449 14 C 0.316 3.684 15 O -0.506 6.506 16 N -0.247 5.247 17 C -0.042 4.042 18 N -0.173 5.173 19 C -0.040 4.040 20 H 0.068 0.932 21 H 0.046 0.954 22 H 0.088 0.912 23 H 0.074 0.926 24 H 0.163 0.837 25 H 0.094 0.906 26 H 0.110 0.890 27 H 0.128 0.872 28 H 0.091 0.909 29 H 0.123 0.877 30 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -2.603 -10.292 3.078 11.054 hybrid contribution 0.519 0.076 -0.826 0.979 sum -2.084 -10.216 2.252 10.667 Atomic orbital electron populations 1.21693 0.95393 1.01189 0.99821 1.17770 0.94360 0.94446 0.86556 0.94778 1.21083 1.32057 1.13250 0.90095 0.92193 1.25562 0.94857 0.95395 1.01412 1.69984 1.36610 1.23612 1.24502 0.85704 0.78342 0.79326 0.78853 1.18536 1.21406 1.20728 1.21731 0.89048 0.81857 0.94659 1.21641 1.21548 1.01507 1.00224 1.17043 0.81049 0.83345 0.86919 1.90710 1.49073 1.83610 1.27215 1.48477 1.53714 1.11057 1.11409 1.22066 1.04365 0.79995 0.97792 1.46647 1.52408 1.07753 1.10465 1.22357 0.97725 0.91177 0.92774 0.93165 0.95438 0.91229 0.92592 0.83691 0.90628 0.88989 0.87228 0.90851 0.87729 0.87585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.13 8.72 71.98 0.63 -4.50 16 2 C 0.09 4.04 2.47 -12.29 -0.03 4.01 16 3 H 0.03 1.74 8.11 -2.39 -0.02 1.72 16 4 C -0.53 -25.03 7.20 25.60 0.18 -24.84 16 5 H 0.06 2.79 7.13 -2.91 -0.02 2.77 16 6 C 0.03 1.38 5.31 84.65 0.45 1.83 16 7 N -0.91 -46.83 11.39 21.45 0.24 -46.59 16 8 Si 0.95 38.83 29.54 68.60 2.03 40.86 16 9 H -0.26 -9.93 7.11 99.48 0.71 -9.23 16 10 H -0.29 -11.83 7.11 99.48 0.71 -11.13 16 11 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 12 C 0.25 10.47 5.52 41.03 0.23 10.69 16 13 C -0.42 -18.83 10.71 22.28 0.24 -18.59 16 14 C 0.52 23.02 7.95 85.03 0.68 23.69 16 15 O -0.62 -30.95 17.88 -4.60 -0.08 -31.04 16 16 N -0.43 -15.21 4.02 -493.72 -1.98 -17.19 16 17 C 0.10 2.28 10.99 127.77 1.40 3.69 16 18 N -0.38 -13.52 4.06 -355.15 -1.44 -14.96 16 19 C 0.10 2.62 9.64 127.77 1.23 3.85 16 20 H 0.05 1.88 5.79 -2.39 -0.01 1.87 16 21 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 22 H 0.07 3.23 6.27 -2.39 -0.01 3.21 16 23 H 0.26 13.13 8.31 -92.71 -0.77 12.36 16 24 H 0.15 6.43 8.06 -2.91 -0.02 6.41 16 25 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 26 H 0.09 2.17 8.09 -2.39 -0.02 2.15 16 27 H 0.11 1.75 7.24 -2.39 -0.02 1.73 16 28 H 0.07 1.86 8.06 -2.39 -0.02 1.84 16 29 H 0.10 1.89 7.30 -2.39 -0.02 1.87 16 30 H 0.11 3.08 4.85 -2.39 -0.01 3.07 16 Total: -1.00 -63.72 252.20 4.91 -58.81 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: 1.13 Total: 10.27 kcal Atomic # 6 Polarization: -5.18 SS G_CDS: 5.01 Total: -0.17 kcal Atomic # 7 Polarization: -75.56 SS G_CDS: -3.18 Total: -78.74 kcal Atomic # 8 Polarization: -30.95 SS G_CDS: -0.08 Total: -31.04 kcal Atomic # 14 Polarization: 38.83 SS G_CDS: 2.03 Total: 40.86 kcal Total: -63.72 4.91 -58.81 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260742478.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.745 kcal (2) G-P(sol) polarization free energy of solvation -63.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds