Wall clock time and date at job start Mon Mar 30 2020 02:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08999 * 109.47469 * 2 1 4 4 C 1.50699 * 109.47494 * 120.00794 * 2 1 3 5 5 H 1.07992 * 120.00478 * 114.49792 * 4 2 1 6 6 C 1.37878 * 119.99727 * 294.50524 * 4 2 1 7 7 N 1.31516 * 120.00080 * 164.70070 * 6 4 2 8 8 Si 1.86799 * 120.00154 * 344.70599 * 6 4 2 9 9 H 1.48503 * 109.47303 * 270.00357 * 8 6 4 10 10 H 1.48501 * 109.47614 * 149.99713 * 8 6 4 11 11 H 1.48505 * 109.47044 * 29.99783 * 8 6 4 12 12 C 1.50708 * 109.46915 * 240.00638 * 2 1 3 13 13 C 1.34820 * 125.77490 * 120.02550 * 12 2 1 14 14 C 1.41481 * 108.08239 * 179.97438 * 13 12 2 15 15 O 1.21777 * 126.18914 * 180.02562 * 14 13 12 16 16 N 1.34869 * 107.61387 * 0.02562 * 14 13 12 17 17 C 1.46495 * 126.16194 * 180.02562 * 16 14 13 18 18 N 1.36610 * 125.77101 * 299.71200 * 12 2 1 19 19 C 1.46497 * 125.90910 * 0.02562 * 18 12 2 20 20 H 1.08998 * 109.47419 * 173.87436 * 1 2 3 21 21 H 1.09000 * 109.46950 * 293.87576 * 1 2 3 22 22 H 1.09002 * 109.47531 * 53.87383 * 1 2 3 23 23 H 0.96997 * 119.99830 * 354.89990 * 7 6 4 24 24 H 1.07999 * 125.95898 * 359.96691 * 13 12 2 25 25 H 1.09002 * 109.47331 * 359.96352 * 17 16 14 26 26 H 1.09000 * 109.47438 * 119.97523 * 17 16 14 27 27 H 1.09004 * 109.46973 * 239.96698 * 17 16 14 28 28 H 1.08996 * 109.47565 * 89.99521 * 19 18 12 29 29 H 1.09004 * 109.46537 * 209.99759 * 19 18 12 30 30 H 1.09001 * 109.47112 * 329.99362 * 19 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7106 1.2303 5 1 2.5780 -1.6375 1.1337 6 6 1.7952 -0.1773 2.4795 7 7 1.9563 -0.9199 3.5529 8 14 1.2450 1.5999 2.6473 9 1 2.4366 2.4774 2.7720 10 1 0.3959 1.7432 3.8571 11 1 0.4652 1.9922 1.4459 12 6 2.0322 -0.7103 -1.2306 13 6 2.8110 -0.1704 -2.1896 14 6 3.0579 -1.1641 -3.1660 15 8 3.7249 -1.0298 -4.1759 16 7 2.4208 -2.2870 -2.7756 17 6 2.4068 -3.5657 -3.4902 18 7 1.7804 -2.0120 -1.5600 19 6 0.9767 -2.9558 -0.7794 20 1 -0.3634 -1.0218 -0.1097 21 1 -0.3633 0.4160 0.9397 22 1 -0.3634 0.6059 -0.8301 23 1 2.1697 -1.8618 3.4634 24 1 3.1816 0.8438 -2.2092 25 1 2.9969 -3.4787 -4.4025 26 1 2.8328 -4.3419 -2.8545 27 1 1.3801 -3.8282 -3.7453 28 1 -0.0640 -2.8974 -1.0984 29 1 1.3491 -3.9679 -0.9380 30 1 1.0470 -2.7043 0.2788 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260742488.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:37 Heat of formation + Delta-G solvation = 40.140064 kcal Electronic energy + Delta-G solvation = -14242.953810 eV Core-core repulsion = 11847.859873 eV Total energy + Delta-G solvation = -2395.093938 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.95632 -36.83043 -34.81150 -32.61334 -31.55350 -30.88901 -26.50850 -25.33316 -24.84959 -21.89082 -20.49388 -18.72655 -17.69261 -16.73176 -15.80867 -15.04212 -14.38303 -14.19352 -13.63763 -13.39635 -12.99310 -12.89502 -12.64423 -12.37909 -12.20748 -11.93750 -11.63947 -11.13531 -10.72373 -10.63281 -10.21926 -9.75709 -9.16935 -9.11481 -8.57349 -8.44184 -7.13448 -6.65105 -4.33169 2.06423 2.39682 3.31571 3.36438 3.48510 3.94535 4.15376 4.34906 5.02133 5.07039 5.27910 5.34208 5.43193 5.55144 5.59716 5.96511 6.07638 6.27702 6.30062 6.35677 6.54216 6.61270 6.88233 6.95359 7.16198 7.68748 7.78079 8.01945 8.14384 8.63049 8.87218 9.35302 10.72272 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.044574 B = 0.010078 C = 0.009224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.021503 B = 2777.576414 C = 3034.851845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.060 3.940 3 H 0.059 0.941 4 C -0.605 4.605 5 H 0.062 0.938 6 C 0.041 3.959 7 N -0.896 5.896 8 Si 1.039 2.961 9 H -0.283 1.283 10 H -0.285 1.285 11 H -0.267 1.267 12 C 0.256 3.744 13 C -0.393 4.393 14 C 0.533 3.467 15 O -0.581 6.581 16 N -0.434 5.434 17 C 0.105 3.895 18 N -0.389 5.389 19 C 0.099 3.901 20 H 0.045 0.955 21 H 0.060 0.940 22 H 0.031 0.969 23 H 0.270 0.730 24 H 0.152 0.848 25 H 0.099 0.901 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.059 0.941 29 H 0.066 0.934 30 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.773 -3.389 -6.575 8.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.039 3.961 3 H 0.076 0.924 4 C -0.643 4.643 5 H 0.080 0.920 6 C -0.166 4.166 7 N -0.528 5.528 8 Si 0.866 3.134 9 H -0.209 1.209 10 H -0.211 1.211 11 H -0.193 1.193 12 C 0.138 3.862 13 C -0.423 4.423 14 C 0.334 3.666 15 O -0.464 6.464 16 N -0.255 5.255 17 C -0.036 4.036 18 N -0.183 5.183 19 C -0.042 4.042 20 H 0.065 0.935 21 H 0.079 0.921 22 H 0.050 0.950 23 H 0.080 0.920 24 H 0.170 0.830 25 H 0.118 0.882 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -4.886 -2.581 -6.044 8.189 hybrid contribution 0.421 -1.495 -1.042 1.870 sum -4.466 -4.075 -7.085 9.314 Atomic orbital electron populations 1.22251 0.97281 1.00383 1.00454 1.18266 0.92857 0.96140 0.88846 0.92366 1.21788 1.41162 1.11190 0.90140 0.92009 1.25767 0.93754 1.05381 0.91654 1.70832 1.42925 1.08318 1.30775 0.84159 0.77530 0.75393 0.76293 1.20929 1.21069 1.19270 1.21564 0.89649 0.80945 0.94028 1.21521 1.17542 1.02570 1.00625 1.17043 0.80322 0.82118 0.87149 1.90756 1.44457 1.81800 1.29437 1.48332 1.49544 1.13393 1.14263 1.21645 1.02449 0.82710 0.96845 1.46267 1.48229 1.10866 1.12902 1.22159 0.92877 0.91141 0.97990 0.93545 0.92113 0.94969 0.92022 0.82986 0.88217 0.91997 0.91984 0.92258 0.91560 0.86026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.77 8.43 37.15 0.31 -2.46 16 2 C 0.06 1.28 2.04 -92.92 -0.19 1.09 16 3 H 0.06 1.25 6.73 -51.93 -0.35 0.90 16 4 C -0.61 -14.91 7.27 -34.44 -0.25 -15.16 16 5 H 0.06 1.65 7.33 -52.49 -0.38 1.27 16 6 C 0.04 1.06 5.33 -17.82 -0.09 0.96 16 7 N -0.90 -25.00 13.70 55.43 0.76 -24.24 16 8 Si 1.04 22.63 26.17 -169.99 -4.45 18.18 16 9 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 10 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 11 H -0.27 -5.21 5.53 56.52 0.31 -4.90 16 12 C 0.26 5.35 5.51 -81.67 -0.45 4.90 16 13 C -0.39 -8.48 10.71 -39.56 -0.42 -8.90 16 14 C 0.53 11.76 7.95 -14.98 -0.12 11.64 16 15 O -0.58 -14.15 17.65 5.12 0.09 -14.06 16 16 N -0.43 -8.13 4.02 -70.06 -0.28 -8.41 16 17 C 0.10 1.41 10.84 59.84 0.65 2.06 16 18 N -0.39 -7.31 4.06 -63.60 -0.26 -7.57 16 19 C 0.10 1.51 9.33 59.85 0.56 2.07 16 20 H 0.05 0.82 5.86 -51.93 -0.30 0.51 16 21 H 0.06 1.17 5.06 -51.93 -0.26 0.91 16 22 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.27 7.46 8.73 -40.82 -0.36 7.10 16 24 H 0.15 3.09 8.06 -52.49 -0.42 2.66 16 25 H 0.10 1.33 7.76 -51.93 -0.40 0.92 16 26 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.78 7.73 -51.93 -0.40 0.38 16 29 H 0.07 0.84 7.88 -51.93 -0.41 0.43 16 30 H 0.12 2.13 5.56 -51.93 -0.29 1.85 16 LS Contribution 247.85 15.07 3.73 3.73 Total: -1.00 -30.89 247.85 -4.15 -35.04 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: -3.73 Total: 1.13 kcal Atomic # 6 Polarization: -3.79 SS G_CDS: -0.01 Total: -3.80 kcal Atomic # 7 Polarization: -40.44 SS G_CDS: 0.22 Total: -40.22 kcal Atomic # 8 Polarization: -14.15 SS G_CDS: 0.09 Total: -14.06 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -4.45 Total: 18.18 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -30.89 -4.15 -35.04 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260742488.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.177 kcal (2) G-P(sol) polarization free energy of solvation -30.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds