Wall clock time and date at job start Mon Mar 30 2020 02:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08999 * 109.47469 * 2 1 4 4 C 1.50699 * 109.47494 * 120.00794 * 2 1 3 5 5 H 1.07992 * 120.00478 * 114.49792 * 4 2 1 6 6 C 1.37878 * 119.99727 * 294.50524 * 4 2 1 7 7 N 1.31516 * 120.00080 * 164.70070 * 6 4 2 8 8 Si 1.86799 * 120.00154 * 344.70599 * 6 4 2 9 9 H 1.48503 * 109.47303 * 270.00357 * 8 6 4 10 10 H 1.48501 * 109.47614 * 149.99713 * 8 6 4 11 11 H 1.48505 * 109.47044 * 29.99783 * 8 6 4 12 12 C 1.50708 * 109.46915 * 240.00638 * 2 1 3 13 13 C 1.34820 * 125.77490 * 120.02550 * 12 2 1 14 14 C 1.41481 * 108.08239 * 179.97438 * 13 12 2 15 15 O 1.21777 * 126.18914 * 180.02562 * 14 13 12 16 16 N 1.34869 * 107.61387 * 0.02562 * 14 13 12 17 17 C 1.46495 * 126.16194 * 180.02562 * 16 14 13 18 18 N 1.36610 * 125.77101 * 299.71200 * 12 2 1 19 19 C 1.46497 * 125.90910 * 0.02562 * 18 12 2 20 20 H 1.08998 * 109.47419 * 173.87436 * 1 2 3 21 21 H 1.09000 * 109.46950 * 293.87576 * 1 2 3 22 22 H 1.09002 * 109.47531 * 53.87383 * 1 2 3 23 23 H 0.96997 * 119.99830 * 354.89990 * 7 6 4 24 24 H 1.07999 * 125.95898 * 359.96691 * 13 12 2 25 25 H 1.09002 * 109.47331 * 359.96352 * 17 16 14 26 26 H 1.09000 * 109.47438 * 119.97523 * 17 16 14 27 27 H 1.09004 * 109.46973 * 239.96698 * 17 16 14 28 28 H 1.08996 * 109.47565 * 89.99521 * 19 18 12 29 29 H 1.09004 * 109.46537 * 209.99759 * 19 18 12 30 30 H 1.09001 * 109.47112 * 329.99362 * 19 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7106 1.2303 5 1 2.5780 -1.6375 1.1337 6 6 1.7952 -0.1773 2.4795 7 7 1.9563 -0.9199 3.5529 8 14 1.2450 1.5999 2.6473 9 1 2.4366 2.4774 2.7720 10 1 0.3959 1.7432 3.8571 11 1 0.4652 1.9922 1.4459 12 6 2.0322 -0.7103 -1.2306 13 6 2.8110 -0.1704 -2.1896 14 6 3.0579 -1.1641 -3.1660 15 8 3.7249 -1.0298 -4.1759 16 7 2.4208 -2.2870 -2.7756 17 6 2.4068 -3.5657 -3.4902 18 7 1.7804 -2.0120 -1.5600 19 6 0.9767 -2.9558 -0.7794 20 1 -0.3634 -1.0218 -0.1097 21 1 -0.3633 0.4160 0.9397 22 1 -0.3634 0.6059 -0.8301 23 1 2.1697 -1.8618 3.4634 24 1 3.1816 0.8438 -2.2092 25 1 2.9969 -3.4787 -4.4025 26 1 2.8328 -4.3419 -2.8545 27 1 1.3801 -3.8282 -3.7453 28 1 -0.0640 -2.8974 -1.0984 29 1 1.3491 -3.9679 -0.9380 30 1 1.0470 -2.7043 0.2788 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260742488.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:37 Heat of formation + Delta-G solvation = 18.676660 kcal Electronic energy + Delta-G solvation = -14243.884534 eV Core-core repulsion = 11847.859873 eV Total energy + Delta-G solvation = -2396.024661 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.52275 -38.50057 -36.51132 -34.31430 -33.02803 -32.51159 -27.85342 -26.86689 -26.56983 -23.53852 -22.05649 -20.40402 -19.56073 -18.17882 -17.27751 -16.63470 -15.99896 -15.87833 -15.21257 -14.87809 -14.55907 -14.26585 -14.17413 -13.88908 -13.49949 -13.39832 -13.27290 -12.81152 -12.35002 -12.20557 -11.83771 -11.36246 -10.98901 -10.85682 -10.45629 -10.04394 -8.72913 -8.67167 -6.35718 0.62664 0.78528 1.59456 1.61904 1.78861 2.27506 2.55641 2.76379 3.11565 3.69558 3.96851 4.19393 4.32410 4.40563 4.49682 4.56607 4.62502 4.70408 4.81694 4.87214 4.99914 5.04477 5.28012 5.37502 5.57858 5.86529 6.07145 6.23254 6.47156 6.57114 7.25246 7.39396 8.68852 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.044574 B = 0.010078 C = 0.009224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.021503 B = 2777.576414 C = 3034.851845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.059 3.941 3 H 0.061 0.939 4 C -0.591 4.591 5 H 0.031 0.969 6 C -0.004 4.004 7 N -0.933 5.933 8 Si 1.071 2.929 9 H -0.282 1.282 10 H -0.290 1.290 11 H -0.228 1.228 12 C 0.247 3.753 13 C -0.412 4.412 14 C 0.514 3.486 15 O -0.617 6.617 16 N -0.428 5.428 17 C 0.095 3.905 18 N -0.383 5.383 19 C 0.094 3.906 20 H 0.057 0.943 21 H 0.058 0.942 22 H 0.054 0.946 23 H 0.257 0.743 24 H 0.155 0.845 25 H 0.099 0.901 26 H 0.084 0.916 27 H 0.094 0.906 28 H 0.089 0.911 29 H 0.096 0.904 30 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.310 -3.557 -7.498 10.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.038 3.962 3 H 0.079 0.921 4 C -0.629 4.629 5 H 0.049 0.951 6 C -0.204 4.204 7 N -0.568 5.568 8 Si 0.893 3.107 9 H -0.209 1.209 10 H -0.216 1.216 11 H -0.151 1.151 12 C 0.127 3.873 13 C -0.442 4.442 14 C 0.315 3.685 15 O -0.504 6.504 16 N -0.247 5.247 17 C -0.044 4.044 18 N -0.175 5.175 19 C -0.045 4.045 20 H 0.076 0.924 21 H 0.077 0.923 22 H 0.073 0.927 23 H 0.066 0.934 24 H 0.172 0.828 25 H 0.118 0.882 26 H 0.102 0.898 27 H 0.113 0.887 28 H 0.108 0.892 29 H 0.114 0.886 30 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -6.455 -2.814 -6.982 9.917 hybrid contribution 0.920 -1.579 -0.771 1.983 sum -5.536 -4.393 -7.753 10.491 Atomic orbital electron populations 1.22174 0.94872 1.01764 1.01288 1.18234 0.94715 0.95830 0.87421 0.92101 1.21826 1.39627 1.09874 0.91557 0.95098 1.26937 0.93667 1.08231 0.91569 1.70950 1.46010 1.07909 1.31947 0.83807 0.77715 0.71500 0.77722 1.20883 1.21584 1.15052 1.21452 0.89939 0.82112 0.93812 1.21699 1.18130 1.03171 1.01197 1.17119 0.80936 0.83339 0.87068 1.90720 1.46220 1.82736 1.30702 1.48494 1.48102 1.14231 1.13902 1.22067 1.04825 0.80775 0.96767 1.46585 1.47388 1.10684 1.12858 1.22363 0.94218 0.91816 0.96106 0.92415 0.92329 0.92666 0.93410 0.82759 0.88249 0.89757 0.88742 0.89221 0.88571 0.88483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.99 8.43 71.98 0.61 -4.38 16 2 C 0.06 2.41 2.04 -12.29 -0.03 2.38 16 3 H 0.06 2.48 6.73 -2.39 -0.02 2.47 16 4 C -0.59 -28.92 7.27 25.60 0.19 -28.73 16 5 H 0.03 1.68 7.33 -2.91 -0.02 1.65 16 6 C 0.00 -0.22 5.33 84.65 0.45 0.23 16 7 N -0.93 -52.90 13.70 21.45 0.29 -52.61 16 8 Si 1.07 44.31 26.17 68.60 1.80 46.10 16 9 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 10 H -0.29 -12.20 7.11 99.48 0.71 -11.49 16 11 H -0.23 -7.90 5.53 99.48 0.55 -7.35 16 12 C 0.25 9.96 5.51 41.03 0.23 10.19 16 13 C -0.41 -17.51 10.71 22.28 0.24 -17.27 16 14 C 0.51 22.34 7.95 85.03 0.68 23.01 16 15 O -0.62 -30.05 17.65 -4.59 -0.08 -30.13 16 16 N -0.43 -15.09 4.02 -493.70 -1.98 -17.07 16 17 C 0.09 2.25 10.84 127.77 1.39 3.64 16 18 N -0.38 -13.51 4.06 -355.14 -1.44 -14.95 16 19 C 0.09 2.59 9.33 127.77 1.19 3.79 16 20 H 0.06 1.85 5.86 -2.39 -0.01 1.83 16 21 H 0.06 2.06 5.06 -2.39 -0.01 2.05 16 22 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 23 H 0.26 14.66 8.73 -92.71 -0.81 13.85 16 24 H 0.15 6.25 8.06 -2.91 -0.02 6.22 16 25 H 0.10 2.43 7.76 -2.39 -0.02 2.41 16 26 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.09 1.68 8.14 -2.38 -0.02 1.66 16 28 H 0.09 1.98 7.73 -2.39 -0.02 1.96 16 29 H 0.10 2.08 7.88 -2.39 -0.02 2.06 16 30 H 0.10 3.26 5.56 -2.39 -0.01 3.25 16 Total: -1.00 -67.32 247.85 4.46 -62.86 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: 0.94 Total: 12.94 kcal Atomic # 6 Polarization: -12.08 SS G_CDS: 4.94 Total: -7.14 kcal Atomic # 7 Polarization: -81.50 SS G_CDS: -3.13 Total: -84.63 kcal Atomic # 8 Polarization: -30.05 SS G_CDS: -0.08 Total: -30.13 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 1.80 Total: 46.10 kcal Total: -67.32 4.46 -62.86 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260742488.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.535 kcal (2) G-P(sol) polarization free energy of solvation -67.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.859 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds